Strain Fitness in Shewanella oneidensis MR-1 around SO1952

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,057,285	+				+0.1
2,057,285	+				+1.2
2,057,670	+				-0.3
2,057,678	-				+0.1
2,057,701	+				+0.0
2,057,743	-				-0.3
2,057,803	+				-0.3
2,057,811	-				-0.6
2,057,822	+				+0.5
2,057,843	+				+0.3
2,058,006	+	ggt-2	SO1952	0.11	+0.5
2,058,049	+	ggt-2	SO1952	0.13	+0.1
2,058,049	+	ggt-2	SO1952	0.13	-0.6
2,058,057	-	ggt-2	SO1952	0.14	-0.1
2,058,195	-	ggt-2	SO1952	0.21	+0.0
2,058,341	+	ggt-2	SO1952	0.30	-1.0
2,058,341	-	ggt-2	SO1952	0.30	-0.1
2,058,349	-	ggt-2	SO1952	0.30	-1.0
2,058,349	-				+0.4
2,058,349	-	ggt-2	SO1952	0.30	+0.0
2,058,349	-	ggt-2	SO1952	0.30	-0.1
2,058,349	-	ggt-2	SO1952	0.30	-1.2
2,058,374	+	ggt-2	SO1952	0.32	+0.5
2,058,382	-	ggt-2	SO1952	0.32	+0.2
2,058,382	-	ggt-2	SO1952	0.32	+1.4
2,058,390	-	ggt-2	SO1952	0.33	-0.3
2,058,454	-	ggt-2	SO1952	0.36	-0.6
2,058,454	-	ggt-2	SO1952	0.36	+1.0
2,058,504	+	ggt-2	SO1952	0.39	+0.5
2,058,533	-	ggt-2	SO1952	0.41	+0.1
2,058,685	-	ggt-2	SO1952	0.50	+0.2
2,058,702	+	ggt-2	SO1952	0.51	-1.6
2,058,800	+	ggt-2	SO1952	0.56	+3.2
2,058,881	+	ggt-2	SO1952	0.61	-0.9
2,058,958	-	ggt-2	SO1952	0.65	+0.6
2,059,107	+	ggt-2	SO1952	0.74	-1.4
2,059,300	+	ggt-2	SO1952	0.85	+0.7
2,059,318	+	ggt-2	SO1952	0.86	-0.5
2,059,478	-				+0.7
2,059,543	-				+0.3
2,059,543	-				+0.8
2,059,673	-				-0.4
2,059,781	+				-0.3
2,059,781	+				-1.1
2,059,781	+				-0.7
2,059,789	-				+0.4
2,059,789	-				+0.3
2,059,789	-				-0.0
2,059,976	-		SO1953	0.24	+0.4
2,060,007	+		SO1953	0.26	+1.0
2,060,036	+		SO1953	0.28	+1.0
2,060,044	-		SO1953	0.29	+0.4
2,060,388	-		SO1953	0.55	+0.9
2,060,422	+		SO1953	0.58	+0.4