Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0756

Experiment: Vanillin 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0754 and Psest_0755 are separated by 92 nucleotidesPsest_0755 and Psest_0756 are separated by 94 nucleotidesPsest_0756 and Psest_0757 are separated by 42 nucleotidesPsest_0757 and Psest_0758 are separated by 114 nucleotides Psest_0754: Psest_0754 - Predicted transcriptional regulators, at 825,903 to 826,208 _0754 Psest_0755: Psest_0755 - Bacterial regulatory helix-turn-helix proteins, AraC family., at 826,301 to 827,098 _0755 Psest_0756: Psest_0756 - alkylhydroperoxidase AhpD family core domain, at 827,193 to 827,651 _0756 Psest_0757: Psest_0757 - hypothetical protein, at 827,694 to 828,167 _0757 Psest_0758: Psest_0758 - Lactoylglutathione lyase and related lyases, at 828,282 to 828,671 _0758 Position (kb) 827 828Strain fitness (log2 ratio) -2 -1 0 1 2 3at 826.493 kb on + strand, within Psest_0755at 826.493 kb on + strand, within Psest_0755at 826.493 kb on + strand, within Psest_0755at 826.493 kb on + strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.598 kb on + strand, within Psest_0755at 826.598 kb on + strand, within Psest_0755at 826.598 kb on + strand, within Psest_0755at 826.599 kb on - strand, within Psest_0755at 826.599 kb on - strand, within Psest_0755at 826.744 kb on + strand, within Psest_0755at 826.745 kb on - strand, within Psest_0755at 826.745 kb on - strand, within Psest_0755at 826.745 kb on - strand, within Psest_0755at 826.977 kb on + strand, within Psest_0755at 826.977 kb on + strand, within Psest_0755at 826.977 kb on + strand, within Psest_0755at 826.977 kb on + strand, within Psest_0755at 826.978 kb on - strand, within Psest_0755at 827.022 kb on + strandat 827.022 kb on + strandat 827.022 kb on + strandat 827.022 kb on + strandat 827.023 kb on - strandat 827.130 kb on - strandat 827.134 kb on + strandat 827.134 kb on + strandat 827.134 kb on + strandat 827.135 kb on - strandat 827.135 kb on - strandat 827.135 kb on - strandat 827.135 kb on - strandat 827.135 kb on - strandat 827.205 kb on + strandat 827.205 kb on + strandat 827.206 kb on - strandat 827.257 kb on - strand, within Psest_0756at 827.409 kb on + strand, within Psest_0756at 827.409 kb on + strand, within Psest_0756at 827.409 kb on + strand, within Psest_0756at 827.409 kb on + strand, within Psest_0756at 827.409 kb on + strand, within Psest_0756at 827.409 kb on + strand, within Psest_0756at 827.409 kb on + strand, within Psest_0756at 827.410 kb on - strand, within Psest_0756at 827.410 kb on - strand, within Psest_0756at 827.410 kb on - strand, within Psest_0756at 827.410 kb on - strand, within Psest_0756at 827.410 kb on - strand, within Psest_0756at 827.410 kb on - strand, within Psest_0756at 827.410 kb on - strand, within Psest_0756at 827.410 kb on - strand, within Psest_0756at 827.637 kb on + strandat 827.637 kb on + strandat 827.638 kb on - strandat 827.840 kb on - strand, within Psest_0757at 827.852 kb on - strand, within Psest_0757at 827.912 kb on + strand, within Psest_0757at 828.016 kb on - strand, within Psest_0757at 828.094 kb on + strand, within Psest_0757at 828.095 kb on - strand, within Psest_0757at 828.095 kb on - strand, within Psest_0757at 828.095 kb on - strand, within Psest_0757at 828.095 kb on - strand, within Psest_0757at 828.355 kb on + strand, within Psest_0758at 828.356 kb on - strand, within Psest_0758at 828.356 kb on - strand, within Psest_0758at 828.356 kb on - strand, within Psest_0758at 828.547 kb on + strand, within Psest_0758at 828.547 kb on + strand, within Psest_0758at 828.548 kb on - strand, within Psest_0758at 828.548 kb on - strand, within Psest_0758at 828.548 kb on - strand, within Psest_0758at 828.548 kb on - strand, within Psest_0758at 828.607 kb on + strand, within Psest_0758at 828.607 kb on + strand, within Psest_0758at 828.607 kb on + strand, within Psest_0758at 828.607 kb on + strand, within Psest_0758at 828.608 kb on - strand, within Psest_0758at 828.608 kb on - strand, within Psest_0758at 828.608 kb on - strand, within Psest_0758at 828.608 kb on - strand, within Psest_0758at 828.608 kb on - strand, within Psest_0758at 828.608 kb on - strand, within Psest_0758at 828.629 kb on - strand, within Psest_0758at 828.629 kb on - strand, within Psest_0758at 828.629 kb on - strand, within Psest_0758

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 2 mM
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826,493 + Psest_0755 0.24 +0.4
826,493 + Psest_0755 0.24 -0.4
826,493 + Psest_0755 0.24 -0.2
826,493 + Psest_0755 0.24 -0.9
826,494 - Psest_0755 0.24 +0.4
826,494 - Psest_0755 0.24 -1.6
826,494 - Psest_0755 0.24 +0.2
826,494 - Psest_0755 0.24 -0.9
826,494 - Psest_0755 0.24 -0.4
826,494 - Psest_0755 0.24 +0.1
826,494 - Psest_0755 0.24 +0.9
826,494 - Psest_0755 0.24 -0.4
826,494 - Psest_0755 0.24 +0.6
826,598 + Psest_0755 0.37 -2.1
826,598 + Psest_0755 0.37 -1.2
826,598 + Psest_0755 0.37 +2.8
826,599 - Psest_0755 0.37 +0.3
826,599 - Psest_0755 0.37 -0.5
826,744 + Psest_0755 0.56 +0.6
826,745 - Psest_0755 0.56 +1.2
826,745 - Psest_0755 0.56 +0.2
826,745 - Psest_0755 0.56 +0.2
826,977 + Psest_0755 0.85 +0.5
826,977 + Psest_0755 0.85 +1.2
826,977 + Psest_0755 0.85 +0.5
826,977 + Psest_0755 0.85 -0.6
826,978 - Psest_0755 0.85 +0.2
827,022 + -0.4
827,022 + -0.8
827,022 + -0.3
827,022 + -0.5
827,023 - -1.1
827,130 - -0.8
827,134 + +0.8
827,134 + +1.4
827,134 + -0.1
827,135 - +0.5
827,135 - -0.0
827,135 - -0.8
827,135 - +1.5
827,135 - +1.9
827,205 + +1.2
827,205 + +1.7
827,206 - -1.3
827,257 - Psest_0756 0.14 -0.6
827,409 + Psest_0756 0.47 -1.0
827,409 + Psest_0756 0.47 -0.4
827,409 + Psest_0756 0.47 -0.9
827,409 + Psest_0756 0.47 -1.3
827,409 + Psest_0756 0.47 -0.4
827,409 + Psest_0756 0.47 -0.6
827,409 + Psest_0756 0.47 -0.8
827,410 - Psest_0756 0.47 +0.7
827,410 - Psest_0756 0.47 +1.2
827,410 - Psest_0756 0.47 +1.2
827,410 - Psest_0756 0.47 -1.1
827,410 - Psest_0756 0.47 -1.8
827,410 - Psest_0756 0.47 -0.4
827,410 - Psest_0756 0.47 +1.2
827,410 - Psest_0756 0.47 +0.8
827,637 + +1.5
827,637 + -1.2
827,638 - +0.4
827,840 - Psest_0757 0.31 +0.7
827,852 - Psest_0757 0.33 -0.8
827,912 + Psest_0757 0.46 -0.4
828,016 - Psest_0757 0.68 +0.1
828,094 + Psest_0757 0.84 +0.4
828,095 - Psest_0757 0.85 -0.2
828,095 - Psest_0757 0.85 +0.9
828,095 - Psest_0757 0.85 +1.8
828,095 - Psest_0757 0.85 -0.3
828,355 + Psest_0758 0.19 -0.4
828,356 - Psest_0758 0.19 -0.2
828,356 - Psest_0758 0.19 -0.6
828,356 - Psest_0758 0.19 -0.3
828,547 + Psest_0758 0.68 +0.4
828,547 + Psest_0758 0.68 +0.7
828,548 - Psest_0758 0.68 -0.2
828,548 - Psest_0758 0.68 -1.4
828,548 - Psest_0758 0.68 -0.6
828,548 - Psest_0758 0.68 +0.6
828,607 + Psest_0758 0.83 -0.9
828,607 + Psest_0758 0.83 -0.2
828,607 + Psest_0758 0.83 +0.3
828,607 + Psest_0758 0.83 +0.9
828,608 - Psest_0758 0.84 -0.0
828,608 - Psest_0758 0.84 -0.0
828,608 - Psest_0758 0.84 -1.5
828,608 - Psest_0758 0.84 -0.4
828,608 - Psest_0758 0.84 -0.4
828,608 - Psest_0758 0.84 -0.3
828,629 - Psest_0758 0.89 +3.2
828,629 - Psest_0758 0.89 +1.8
828,629 - Psest_0758 0.89 +0.7

Or see this region's nucleotide sequence