Strain Fitness in Escherichia coli BW25113 around b3264

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
3,409,828	-	yhdJ	b3262	0.17	+0.6
3,409,873	-	yhdJ	b3262	0.22	+0.4
3,409,879	+	yhdJ	b3262	0.23	+0.8
3,409,879	+	yhdJ	b3262	0.23	+1.1
3,409,895	-	yhdJ	b3262	0.25	+0.6
3,409,915	+	yhdJ	b3262	0.27	-0.4
3,409,968	+	yhdJ	b3262	0.33	+0.3
3,410,048	-	yhdJ	b3262	0.42	+0.0
3,410,097	+	yhdJ	b3262	0.48	+0.8
3,410,108	+	yhdJ	b3262	0.49	+0.7
3,410,168	+	yhdJ	b3262	0.56	+0.1
3,410,186	-	yhdJ	b3262	0.58	+1.3
3,410,186	-	yhdJ	b3262	0.58	+0.1
3,410,316	+	yhdJ	b3262	0.72	+0.4
3,410,334	-	yhdJ	b3262	0.74	+2.7
3,410,423	+	yhdJ	b3262	0.85	+0.4
3,410,460	+	yhdJ	b3262	0.89	-1.1
3,410,464	+	yhdJ	b3262	0.89	-0.2
3,410,565	+				+0.0
3,410,565	+				-0.6
3,410,565	+				+0.6
3,410,603	+				-1.0
3,410,613	+				+0.1
3,410,616	-				+0.2
3,410,618	+				+0.2
3,410,629	+				+0.5
3,410,631	-				-0.4
3,410,631	-				-0.3
3,410,633	+				+0.1
3,410,633	+				+0.4
3,410,633	+				+0.5
3,410,636	-				-0.7
3,410,653	+				+0.2
3,410,653	+				-0.7
3,410,654	+				+0.1
3,410,661	-	yhdU	b3263	0.10	-0.3
3,410,677	-	yhdU	b3263	0.19	-0.3
3,410,678	-	yhdU	b3263	0.19	-1.1
3,410,678	-	yhdU	b3263	0.19	+0.4
3,410,679	+	yhdU	b3263	0.20	+0.2
3,410,693	+	yhdU	b3263	0.28	+0.1
3,410,698	+	yhdU	b3263	0.31	+1.9
3,410,712	-	yhdU	b3263	0.38	-0.8
3,410,716	+	yhdU	b3263	0.41	+0.2
3,410,716	+	yhdU	b3263	0.41	-0.5
3,410,764	+	yhdU	b3263	0.67	-0.4
3,410,764	+	yhdU	b3263	0.67	+0.4
3,410,764	+	yhdU	b3263	0.67	-0.4
3,410,772	-	yhdU	b3263	0.72	+2.7
3,410,772	-	yhdU	b3263	0.72	+2.7
3,410,778	+	yhdU	b3263	0.75	+0.1
3,410,788	+	yhdU	b3263	0.81	+1.6
3,410,788	+	yhdU	b3263	0.81	-0.0
3,410,788	+	yhdU	b3263	0.81	+0.0
3,410,788	+	yhdU	b3263	0.81	-0.0
3,410,880	+				+0.9
3,410,896	+	envR	b3264	0.11	+1.9
3,410,901	+	envR	b3264	0.11	+0.1
3,410,911	+	envR	b3264	0.13	+1.0
3,410,968	-	envR	b3264	0.22	+2.7
3,411,043	+	envR	b3264	0.33	+2.7
3,411,062	+	envR	b3264	0.36	+2.7
3,411,079	+	envR	b3264	0.38	+2.7
3,411,114	+	envR	b3264	0.44	+0.4
3,411,122	-	envR	b3264	0.45	+2.7
3,411,231	-	envR	b3264	0.61	-0.7
3,411,243	-	envR	b3264	0.63	-0.6
3,411,249	-	envR	b3264	0.64	-0.0
3,411,250	-	envR	b3264	0.64	+0.2
3,411,250	-	envR	b3264	0.64	+0.7
3,411,252	+	envR	b3264	0.64	+2.7
3,411,260	-	envR	b3264	0.66	+0.2
3,411,260	-	envR	b3264	0.66	-0.2
3,411,293	+	envR	b3264	0.71	+1.7
3,411,298	-	envR	b3264	0.71	-0.4
3,411,298	-	envR	b3264	0.71	-0.5
3,411,306	-	envR	b3264	0.73	+0.5
3,411,369	-	envR	b3264	0.82	+0.2
3,411,397	+	envR	b3264	0.86	-0.9
3,411,404	+	envR	b3264	0.87	-0.7
3,411,410	+	envR	b3264	0.88	+0.7
3,411,442	+				+1.5
3,411,442	+				-0.3
3,411,450	+				+1.7
3,411,452	+				+0.1
3,411,455	+				+1.7
3,411,807	-				+0.3
3,411,807	-				+0.4
3,411,807	-				+0.3
3,411,889	-				-0.1
3,411,891	-				-0.1
3,411,923	-				+0.4
3,411,928	-				+1.2
3,411,928	-				+0.7
3,411,928	-				+0.2
3,411,928	-				+0.5
3,411,947	-				+0.5
3,411,960	+				+1.7
3,411,960	+				+2.7
3,411,968	-				-0.3
3,411,999	-				-0.2
3,412,013	+	acrE	b3265	0.11	+0.1
3,412,056	-	acrE	b3265	0.15	-0.2
3,412,065	+	acrE	b3265	0.15	-0.1
3,412,065	+	acrE	b3265	0.15	-0.8
3,412,067	-	acrE	b3265	0.16	+0.2
3,412,067	-	acrE	b3265	0.16	+0.4
3,412,067	-	acrE	b3265	0.16	+0.7
3,412,067	-	acrE	b3265	0.16	-0.1
3,412,079	-	acrE	b3265	0.17	-1.1
3,412,079	-	acrE	b3265	0.17	-0.4
3,412,081	-	acrE	b3265	0.17	+0.3
3,412,103	-	acrE	b3265	0.19	+0.1
3,412,111	-	acrE	b3265	0.19	-1.1
3,412,147	-	acrE	b3265	0.23	+0.2
3,412,150	+	acrE	b3265	0.23	+0.3
3,412,161	+	acrE	b3265	0.24	-0.1
3,412,161	+	acrE	b3265	0.24	-1.4
3,412,169	-	acrE	b3265	0.24	+0.4
3,412,169	-	acrE	b3265	0.24	-0.0
3,412,169	-	acrE	b3265	0.24	+0.8
3,412,282	+	acrE	b3265	0.34	+0.2
3,412,288	+	acrE	b3265	0.35	+0.0
3,412,288	+	acrE	b3265	0.35	-0.3
3,412,305	+	acrE	b3265	0.36	+0.2
3,412,314	-	acrE	b3265	0.37	+0.2
3,412,333	+	acrE	b3265	0.39	+0.1