Strain Fitness in Escherichia coli BW25113 around b3749

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
3,930,801	+	trkD	b3747	0.78	+0.6
3,930,809	-	trkD	b3747	0.79	-0.3
3,930,809	-	trkD	b3747	0.79	+0.4
3,930,812	+	trkD	b3747	0.79	-0.3
3,930,855	-	trkD	b3747	0.81	-0.6
3,930,866	-	trkD	b3747	0.82	+0.5
3,930,866	-	trkD	b3747	0.82	+0.4
3,930,868	+	trkD	b3747	0.82	+0.2
3,930,871	+	trkD	b3747	0.82	-0.4
3,930,884	+	trkD	b3747	0.83	-0.6
3,930,900	-	trkD	b3747	0.84	-1.5
3,930,903	+	trkD	b3747	0.84	+0.5
3,930,907	+	trkD	b3747	0.84	+0.4
3,930,952	+	trkD	b3747	0.86	-0.1
3,931,004	+	trkD	b3747	0.89	-0.5
3,931,035	+				-0.1
3,931,039	-				+0.1
3,931,070	-				+1.5
3,931,070	-				-1.7
3,931,109	+				-0.2
3,931,109	+				-3.6
3,931,111	+				-0.7
3,931,111	+				-1.9
3,931,111	+				+1.9
3,931,134	-				+0.3
3,931,138	+				-0.1
3,931,194	-				+1.0
3,931,254	+				+1.3
3,931,264	+				+0.2
3,931,264	+				+1.4
3,931,310	+				-0.5
3,931,327	-				+2.2
3,931,327	-				+0.0
3,931,330	+				-2.8
3,931,342	-				-0.2
3,931,399	-				-0.3
3,931,435	-	rbsD	b3748	0.15	-2.1
3,931,443	-	rbsD	b3748	0.16	-1.8
3,931,443	-	rbsD	b3748	0.16	+0.6
3,931,443	-	rbsD	b3748	0.16	-0.1
3,931,449	-	rbsD	b3748	0.18	+0.7
3,931,456	-	rbsD	b3748	0.20	-1.1
3,931,461	+	rbsD	b3748	0.21	-1.7
3,931,461	+	rbsD	b3748	0.21	+0.6
3,931,506	+	rbsD	b3748	0.31	+0.3
3,931,512	+	rbsD	b3748	0.33	+0.7
3,931,512	+	rbsD	b3748	0.33	-2.3
3,931,513	+	rbsD	b3748	0.33	+0.0
3,931,519	-	rbsD	b3748	0.35	+0.1
3,931,533	+	rbsD	b3748	0.38	+1.1
3,931,533	+	rbsD	b3748	0.38	-0.6
3,931,553	-	rbsD	b3748	0.43	+0.7
3,931,560	-	rbsD	b3748	0.44	-1.5
3,931,560	-	rbsD	b3748	0.44	-2.4
3,931,587	-	rbsD	b3748	0.51	+0.5
3,931,605	+	rbsD	b3748	0.55	+0.3
3,931,605	+	rbsD	b3748	0.55	-0.7
3,931,632	+	rbsD	b3748	0.61	-1.5
3,931,641	-	rbsD	b3748	0.64	+0.6
3,931,658	+	rbsD	b3748	0.68	+0.2
3,931,676	+	rbsD	b3748	0.72	-0.8
3,931,676	+	rbsD	b3748	0.72	+0.6
3,931,684	-	rbsD	b3748	0.74	+0.0
3,931,684	-	rbsD	b3748	0.74	+0.8
3,931,684	-	rbsD	b3748	0.74	+1.6
3,931,684	-	rbsD	b3748	0.74	+0.0
3,931,684	-	rbsD	b3748	0.74	+0.7
3,931,813	-				+1.2
3,931,821	-				-0.2
3,931,908	-				-2.9
3,931,908	-				+0.9
3,931,990	-	rbsA	b3749	0.13	+1.4
3,931,990	-	rbsA	b3749	0.13	+0.9
3,932,032	-	rbsA	b3749	0.15	+0.6
3,932,041	+	rbsA	b3749	0.16	+0.2
3,932,062	-	rbsA	b3749	0.17	+1.0
3,932,062	-	rbsA	b3749	0.17	+1.1
3,932,080	-	rbsA	b3749	0.19	-3.7
3,932,080	-	rbsA	b3749	0.19	-0.8
3,932,127	+	rbsA	b3749	0.22	-0.1
3,932,127	+	rbsA	b3749	0.22	-0.6
3,932,204	+	rbsA	b3749	0.27	-0.1
3,932,226	+	rbsA	b3749	0.28	+0.2
3,932,234	-	rbsA	b3749	0.29	-0.4
3,932,302	-	rbsA	b3749	0.33	-1.1
3,932,340	+	rbsA	b3749	0.36	-2.7
3,932,372	+	rbsA	b3749	0.38	+0.4
3,932,383	+	rbsA	b3749	0.39	+0.5
3,932,383	+	rbsA	b3749	0.39	-0.7
3,932,383	+	rbsA	b3749	0.39	-0.9
3,932,391	-	rbsA	b3749	0.39	-0.8
3,932,456	+	rbsA	b3749	0.43	-0.0
3,932,466	+	rbsA	b3749	0.44	-0.6
3,932,481	-	rbsA	b3749	0.45	-0.4
3,932,490	-	rbsA	b3749	0.46	+0.8
3,932,542	+	rbsA	b3749	0.49	-0.5
3,932,542	+	rbsA	b3749	0.49	-1.0
3,932,555	-	rbsA	b3749	0.50	-1.0
3,932,555	-	rbsA	b3749	0.50	-0.1
3,932,578	+	rbsA	b3749	0.52	-1.9
3,932,578	+	rbsA	b3749	0.52	-0.2
3,932,589	+	rbsA	b3749	0.52	-1.1
3,932,599	+	rbsA	b3749	0.53	-0.1
3,932,599	+	rbsA	b3749	0.53	+1.2
3,932,599	+	rbsA	b3749	0.53	+0.2
3,932,599	+	rbsA	b3749	0.53	-0.3
3,932,604	-	rbsA	b3749	0.53	+0.7
3,932,684	+	rbsA	b3749	0.59	-2.6
3,932,689	+	rbsA	b3749	0.59	-1.6
3,932,689	+	rbsA	b3749	0.59	-1.4
3,932,706	+	rbsA	b3749	0.60	-0.5
3,932,706	+	rbsA	b3749	0.60	-0.1
3,932,718	+	rbsA	b3749	0.61	+0.4
3,932,720	+	rbsA	b3749	0.61	+0.9
3,932,728	+	rbsA	b3749	0.62	+0.0
3,932,728	+	rbsA	b3749	0.62	-3.7
3,932,729	+	rbsA	b3749	0.62	-1.3
3,932,731	-	rbsA	b3749	0.62	+1.4
3,932,738	+	rbsA	b3749	0.62	-0.4
3,932,738	+	rbsA	b3749	0.62	-1.0
3,932,754	-	rbsA	b3749	0.63	+0.1
3,932,754	-	rbsA	b3749	0.63	+0.7
3,932,796	-	rbsA	b3749	0.66	-0.6
3,932,827	-	rbsA	b3749	0.68	+0.7
3,932,874	+	rbsA	b3749	0.71	-0.5
3,932,874	+	rbsA	b3749	0.71	-1.0
3,932,876	-	rbsA	b3749	0.71	+0.5
3,932,876	-	rbsA	b3749	0.71	-1.3
3,932,902	-	rbsA	b3749	0.73	+0.9
3,932,927	-	rbsA	b3749	0.75	-0.0
3,932,927	-	rbsA	b3749	0.75	+0.1
3,932,968	+	rbsA	b3749	0.77	+0.4
3,933,015	+	rbsA	b3749	0.81	-1.4
3,933,015	+	rbsA	b3749	0.81	-0.9
3,933,027	-	rbsA	b3749	0.81	+0.7
3,933,064	-	rbsA	b3749	0.84	+1.5
3,933,070	-	rbsA	b3749	0.84	+0.8
3,933,070	-	rbsA	b3749	0.84	+1.3
3,933,070	-	rbsA	b3749	0.84	+0.4
3,933,082	-	rbsA	b3749	0.85	+0.6
3,933,118	-	rbsA	b3749	0.87	-0.6
3,933,118	-	rbsA	b3749	0.87	+1.1
3,933,145	+	rbsA	b3749	0.89	+0.0
3,933,164	+				-1.2
3,933,185	-				+0.7
3,933,200	-				+0.4
3,933,247	+				-0.7
3,933,256	-				+0.3
3,933,256	-				+0.3
3,933,258	+				-0.7
3,933,258	+				-3.2
3,933,262	+				-1.6
3,933,269	+				+0.8
3,933,282	+				-1.2
3,933,317	+				+0.0
3,933,317	+				-0.4
3,933,324	-				-0.6
3,933,345	-				-0.2
3,933,345	-				-1.0
3,933,384	+				+0.0
3,933,460	+	rbsC	b3750	0.15	+5.4
3,933,481	-	rbsC	b3750	0.18	+0.7
3,933,495	+	rbsC	b3750	0.19	-0.1
3,933,495	+	rbsC	b3750	0.19	+1.2
3,933,540	+	rbsC	b3750	0.24	+1.1
3,933,548	-	rbsC	b3750	0.25	+0.6
3,933,548	-	rbsC	b3750	0.25	+0.7
3,933,592	+	rbsC	b3750	0.29	+0.0
3,933,592	+	rbsC	b3750	0.29	-3.5
3,933,755	+	rbsC	b3750	0.46	-0.0
3,933,755	+	rbsC	b3750	0.46	-1.9
3,933,768	+	rbsC	b3750	0.47	-1.2
3,933,815	-	rbsC	b3750	0.52	+0.2
3,933,815	-	rbsC	b3750	0.52	+1.3
3,933,848	-	rbsC	b3750	0.56	-0.9
3,933,856	+	rbsC	b3750	0.56	-2.6
3,933,866	+	rbsC	b3750	0.57	+0.3
3,933,876	-	rbsC	b3750	0.58	+1.1
3,933,878	-	rbsC	b3750	0.59	+0.1
3,933,883	-	rbsC	b3750	0.59	-0.5
3,933,883	-	rbsC	b3750	0.59	+0.5
3,933,886	-	rbsC	b3750	0.60	-0.9
3,933,890	+	rbsC	b3750	0.60	-0.8
3,933,898	+	rbsC	b3750	0.61	-1.4
3,933,898	+	rbsC	b3750	0.61	-0.3
3,933,898	-	rbsC	b3750	0.61	+0.6
3,933,924	-	rbsC	b3750	0.63	+1.2
3,933,924	-	rbsC	b3750	0.63	+0.4
3,933,937	+	rbsC	b3750	0.65	+0.5
3,933,950	+	rbsC	b3750	0.66	+1.0
3,933,950	+	rbsC	b3750	0.66	+0.2
3,934,001	-	rbsC	b3750	0.71	+1.3
3,934,001	-	rbsC	b3750	0.71	+2.3
3,934,003	-	rbsC	b3750	0.72	+0.8
3,934,051	-	rbsC	b3750	0.77	-0.9
3,934,056	-	rbsC	b3750	0.77	+0.0
3,934,075	+				-0.6
3,934,094	+	rbsC	b3750	0.81	-1.4
3,934,097	-	rbsC	b3750	0.81	+0.6
3,934,101	-	rbsC	b3750	0.82	-1.3
3,934,110	-	rbsC	b3750	0.83	+0.5
3,934,269	-				-2.2