Strain Fitness in Escherichia coli BW25113 around b3162

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
3,302,996	+	mtr	b3161	0.32	+0.3
3,303,032	-	mtr	b3161	0.35	+0.2
3,303,032	-	mtr	b3161	0.35	+0.1
3,303,054	-	mtr	b3161	0.37	-2.8
3,303,054	-	mtr	b3161	0.37	+0.2
3,303,062	-	mtr	b3161	0.38	+0.2
3,303,088	+	mtr	b3161	0.40	-0.1
3,303,088	+	mtr	b3161	0.40	+0.6
3,303,118	+	mtr	b3161	0.42	-0.3
3,303,123	-	mtr	b3161	0.42	+1.2
3,303,126	-	mtr	b3161	0.43	+0.4
3,303,126	-	mtr	b3161	0.43	-0.5
3,303,141	-	mtr	b3161	0.44	+0.2
3,303,141	-	mtr	b3161	0.44	+0.0
3,303,148	-	mtr	b3161	0.44	+0.3
3,303,148	-	mtr	b3161	0.44	-0.5
3,303,184	+	mtr	b3161	0.47	+0.6
3,303,184	+	mtr	b3161	0.47	+0.4
3,303,230	+	mtr	b3161	0.51	+0.1
3,303,312	-	mtr	b3161	0.58	-0.5
3,303,333	+	mtr	b3161	0.59	+0.5
3,303,333	+	mtr	b3161	0.59	+0.3
3,303,374	-	mtr	b3161	0.63	+0.1
3,303,408	+	mtr	b3161	0.65	+0.1
3,303,411	-	mtr	b3161	0.66	+0.3
3,303,469	+	mtr	b3161	0.70	+0.4
3,303,531	+	mtr	b3161	0.75	-0.1
3,303,535	+	mtr	b3161	0.76	-0.3
3,303,576	+	mtr	b3161	0.79	-0.1
3,303,584	-	mtr	b3161	0.79	+0.7
3,303,647	+	mtr	b3161	0.84	+0.7
3,303,824	+				+0.2
3,303,825	+				+0.1
3,303,981	+				-0.3
3,304,058	-				+0.3
3,304,058	-				+0.9
3,304,106	+				-1.2
3,304,172	+				+0.4
3,304,177	+				+0.1
3,304,276	-	deaD	b3162	0.15	+1.0
3,304,328	+	deaD	b3162	0.18	-0.4
3,304,328	+	deaD	b3162	0.18	+0.0
3,304,505	+	deaD	b3162	0.27	-1.8
3,304,529	+	deaD	b3162	0.28	-0.5
3,304,616	-	deaD	b3162	0.33	-2.6
3,304,616	-				+2.6
3,304,638	-	deaD	b3162	0.34	+0.1
3,304,687	-	deaD	b3162	0.37	+0.4
3,304,693	+	deaD	b3162	0.37	-0.6
3,304,807	-	deaD	b3162	0.43	+0.7
3,304,871	-	deaD	b3162	0.46	-1.6
3,304,900	+	deaD	b3162	0.48	+1.6
3,304,947	+				-0.9
3,304,947	+	deaD	b3162	0.50	-0.4
3,304,966	-				-0.9
3,304,966	-	deaD	b3162	0.51	+0.0
3,304,967	+	deaD	b3162	0.52	-0.1
3,304,967	+	deaD	b3162	0.52	-0.6
3,304,975	-	deaD	b3162	0.52	+0.1
3,304,975	-	deaD	b3162	0.52	-1.5
3,304,975	-	deaD	b3162	0.52	-0.2
3,304,998	-	deaD	b3162	0.53	-1.1
3,305,005	+				-0.2
3,305,029	-	deaD	b3162	0.55	-1.6
3,305,070	+	deaD	b3162	0.57	-0.7
3,305,070	+	deaD	b3162	0.57	-0.9
3,305,078	-	deaD	b3162	0.57	-2.4
3,305,323	-	deaD	b3162	0.70	+0.0
3,305,323	-	deaD	b3162	0.70	-0.3
3,305,435	+	deaD	b3162	0.76	+0.8
3,305,435	+	deaD	b3162	0.76	-0.3
3,305,452	-	deaD	b3162	0.77	-0.2
3,305,517	-				-0.6
3,305,536	+	deaD	b3162	0.82	-1.7
3,305,593	-	deaD	b3162	0.85	+0.0
3,305,593	-	deaD	b3162	0.85	-0.1
3,305,593	-	deaD	b3162	0.85	+0.6
3,305,593	-	deaD	b3162	0.85	-0.2
3,305,617	-	deaD	b3162	0.86	-0.2
3,305,621	-	deaD	b3162	0.86	-0.9
3,305,621	-	deaD	b3162	0.86	-1.0
3,305,660	-	deaD	b3162	0.88	-2.1
3,305,768	+				-1.9
3,305,768	+				-0.9
3,305,844	-				-0.6
3,305,881	+				+0.5
3,305,884	+	yrbN	b4685	0.11	+0.4
3,305,884	+	yrbN	b4685	0.11	-1.0
3,305,884	+	yrbN	b4685	0.11	-1.5
3,305,889	-	yrbN	b4685	0.17	+0.4
3,305,889	-	yrbN	b4685	0.17	+0.6
3,305,892	-	yrbN	b4685	0.21	-0.3
3,305,892	-	yrbN	b4685	0.21	+0.9
3,305,915	+	yrbN	b4685	0.49	-0.9
3,305,926	-	yrbN	b4685	0.63	+0.5
3,305,960	-				-0.3
3,305,962	+				+0.3
3,306,073	-				-0.0
3,306,103	-				+0.2
3,306,171	+	nlpI	b3163	0.12	-1.0
3,306,189	-	nlpI	b3163	0.14	-0.8
3,306,189	-	nlpI	b3163	0.14	-1.3
3,306,192	-	nlpI	b3163	0.15	-1.6
3,306,216	-	nlpI	b3163	0.17	-0.3
3,306,275	-	nlpI	b3163	0.24	-0.4
3,306,275	-	nlpI	b3163	0.24	-0.7
3,306,640	-	nlpI	b3163	0.65	-0.9
3,306,640	-	nlpI	b3163	0.65	+0.0
3,306,652	-	nlpI	b3163	0.67	-2.1
3,306,676	+	nlpI	b3163	0.69	-0.5
3,306,712	+	nlpI	b3163	0.73	-2.7
3,306,728	+	nlpI	b3163	0.75	-1.4
3,306,729	+	nlpI	b3163	0.75	-2.1
3,306,855	-	nlpI	b3163	0.90	-0.8