Strain Fitness in Pseudomonas putida KT2440 around PP_1847

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
2,071,276	+				+0.4
2,071,277	-				+2.5
2,071,277	-				-0.4
2,071,330	+				-0.1
2,071,331	-				+0.6
2,071,331	-				+0.9
2,071,331	-				+2.0
2,071,331	-				+0.5
2,071,331	-				+0.7
2,071,334	+				+0.6
2,071,334	+				-0.7
2,071,334	+				+0.5
2,071,335	-				+0.3
2,071,367	-				-0.0
2,071,367	-				+0.4
2,071,367	-				+0.9
2,071,460	+				-0.2
2,071,460	+				-1.6
2,071,460	+				-0.8
2,071,460	+				+0.7
2,071,461	-				-2.3
2,071,461	-				-1.1
2,071,463	-				-0.6
2,071,499	-		PP_1847	0.11	+2.1
2,071,499	-		PP_1847	0.11	-0.9
2,071,499	-		PP_1847	0.11	-1.4
2,071,499	-		PP_1847	0.11	+0.1
2,071,499	-		PP_1847	0.11	+0.3
2,071,511	+		PP_1847	0.11	+0.3
2,071,511	+		PP_1847	0.11	-0.1
2,071,556	+		PP_1847	0.13	+0.2
2,071,556	+		PP_1847	0.13	-1.0
2,071,557	-		PP_1847	0.13	-0.5
2,071,557	-		PP_1847	0.13	-1.2
2,071,558	+		PP_1847	0.13	-0.1
2,071,558	+		PP_1847	0.13	-0.8
2,071,559	-		PP_1847	0.13	-0.2
2,071,559	-		PP_1847	0.13	-0.7
2,071,615	+		PP_1847	0.16	-1.0
2,071,615	+		PP_1847	0.16	-0.2
2,071,615	+		PP_1847	0.16	+0.2
2,071,616	-		PP_1847	0.16	+1.1
2,071,616	-		PP_1847	0.16	+0.9
2,071,616	-		PP_1847	0.16	+1.6
2,071,616	-		PP_1847	0.16	-1.6
2,071,616	-		PP_1847	0.16	-0.2
2,071,616	-		PP_1847	0.16	+2.4
2,071,671	+		PP_1847	0.19	+2.8
2,071,672	-		PP_1847	0.19	-0.8
2,071,743	+		PP_1847	0.22	+0.0
2,071,743	+		PP_1847	0.22	-1.3
2,071,743	+		PP_1847	0.22	+0.3
2,071,743	+		PP_1847	0.22	+1.2
2,071,743	+		PP_1847	0.22	-2.0
2,071,744	-		PP_1847	0.22	-1.1
2,071,744	-		PP_1847	0.22	+0.3
2,071,744	-		PP_1847	0.22	+0.8
2,071,744	-		PP_1847	0.22	-1.0
2,071,744	-		PP_1847	0.22	-0.4
2,071,744	-		PP_1847	0.22	-1.8
2,071,744	-		PP_1847	0.22	+0.8
2,071,747	+		PP_1847	0.22	+0.7
2,071,747	+		PP_1847	0.22	-0.3
2,071,748	-		PP_1847	0.22	+2.4
2,071,748	-		PP_1847	0.22	-0.4
2,071,748	-				+0.6
2,071,748	-		PP_1847	0.22	-0.8
2,071,748	-		PP_1847	0.22	+0.7
2,071,786	+		PP_1847	0.24	+0.9
2,071,787	-		PP_1847	0.24	+0.4
2,071,787	-		PP_1847	0.24	-1.2
2,071,787	-		PP_1847	0.24	-0.9
2,071,954	+		PP_1847	0.32	-0.4
2,071,955	-		PP_1847	0.32	+0.5
2,071,956	+		PP_1847	0.32	+1.1
2,071,981	+		PP_1847	0.33	+0.6
2,071,982	-		PP_1847	0.33	+0.4
2,071,986	-		PP_1847	0.33	+0.4
2,071,986	-		PP_1847	0.33	-0.0
2,071,986	-		PP_1847	0.33	+1.8
2,072,011	+		PP_1847	0.35	-0.3
2,072,011	+		PP_1847	0.35	+0.3
2,072,012	-		PP_1847	0.35	-0.2
2,072,012	-		PP_1847	0.35	-1.0
2,072,213	+		PP_1847	0.44	-1.0
2,072,245	+		PP_1847	0.45	+0.3
2,072,245	+		PP_1847	0.45	-0.0
2,072,246	-		PP_1847	0.46	+0.5
2,072,246	-				-0.0
2,072,248	+		PP_1847	0.46	-1.2
2,072,358	-		PP_1847	0.51	-0.0
2,072,389	+		PP_1847	0.52	+0.6
2,072,389	+		PP_1847	0.52	-0.7
2,072,389	+		PP_1847	0.52	-0.3
2,072,389	+		PP_1847	0.52	+2.1
2,072,389	+		PP_1847	0.52	-0.1
2,072,389	+		PP_1847	0.52	-0.1
2,072,389	+		PP_1847	0.52	+0.1
2,072,389	+		PP_1847	0.52	+0.5
2,072,389	+		PP_1847	0.52	+1.7
2,072,389	+		PP_1847	0.52	+0.7
2,072,389	+		PP_1847	0.52	-0.4
2,072,390	-		PP_1847	0.52	+1.2
2,072,390	-		PP_1847	0.52	+1.1
2,072,390	-		PP_1847	0.52	-1.0
2,072,390	-		PP_1847	0.52	-0.7
2,072,390	-		PP_1847	0.52	-0.1
2,072,390	-		PP_1847	0.52	-0.6
2,072,398	+		PP_1847	0.53	-0.9
2,072,399	-		PP_1847	0.53	-1.4
2,072,455	+		PP_1847	0.55	+1.9
2,072,455	+		PP_1847	0.55	+0.1
2,072,455	+		PP_1847	0.55	+0.7
2,072,508	-		PP_1847	0.58	-0.8
2,072,521	+		PP_1847	0.58	+0.5
2,072,522	-		PP_1847	0.58	-0.3
2,072,582	-		PP_1847	0.61	-0.7
2,072,767	+		PP_1847	0.70	-0.4
2,072,767	+		PP_1847	0.70	+0.5
2,072,855	-		PP_1847	0.74	+0.6
2,072,855	-		PP_1847	0.74	+0.1
2,072,855	-		PP_1847	0.74	-0.5
2,072,896	-		PP_1847	0.76	+1.2
2,072,896	-		PP_1847	0.76	-0.0
2,072,896	-		PP_1847	0.76	-1.1
2,072,920	+		PP_1847	0.77	+0.1
2,072,920	+		PP_1847	0.77	+0.0
2,072,920	+		PP_1847	0.77	-0.0
2,072,920	+		PP_1847	0.77	-0.3
2,072,920	+		PP_1847	0.77	-0.4
2,072,920	+		PP_1847	0.77	+0.1
2,072,920	+		PP_1847	0.77	-0.2
2,072,920	+		PP_1847	0.77	+0.3
2,072,921	-				+0.6
2,072,921	-		PP_1847	0.77	-1.9
2,072,921	-		PP_1847	0.77	+1.4
2,072,921	-		PP_1847	0.77	+1.2
2,072,921	-		PP_1847	0.77	+0.2
2,072,986	-				+1.6
2,072,986	-		PP_1847	0.80	-0.6
2,073,010	-		PP_1847	0.81	+1.1
2,073,010	-		PP_1847	0.81	+0.0
2,073,049	+		PP_1847	0.83	-0.3
2,073,049	+		PP_1847	0.83	-1.0
2,073,053	+		PP_1847	0.83	+3.4
2,073,053	+		PP_1847	0.83	-0.2
2,073,053	+		PP_1847	0.83	-0.3
2,073,054	-		PP_1847	0.83	-0.8
2,073,097	+		PP_1847	0.85	+0.0
2,073,115	+		PP_1847	0.86	+0.7
2,073,115	+		PP_1847	0.86	-2.0
2,073,115	+		PP_1847	0.86	+1.1
2,073,116	-		PP_1847	0.86	-1.1
2,073,116	-		PP_1847	0.86	-0.0
2,073,156	-		PP_1847	0.88	-2.4
2,073,165	+		PP_1847	0.89	+2.0
2,073,165	+		PP_1847	0.89	-0.8
2,073,166	-		PP_1847	0.89	+1.8
2,073,272	-				+0.6
2,073,286	+				-0.3
2,073,287	-				+0.2
2,073,438	+				+1.0
2,073,468	+				+0.6
2,073,468	+				-0.2
2,073,469	-				-1.4
2,073,469	-				+0.2
2,073,469	-				+0.4
2,073,483	+				-0.3
2,073,483	+				+0.0
2,073,483	+				-0.5
2,073,483	+				-0.9
2,073,483	+				-1.5
2,073,484	-				-0.4
2,073,484	-				+0.9
2,073,562	+				+5.1
2,073,563	-				-1.7
2,073,563	-				+0.2
2,073,580	+				-0.8
2,073,580	+				+1.6
2,073,581	-				-1.4
2,073,601	+				+0.1
2,073,601	+				+0.5
2,073,602	-				-0.1
2,073,602	-				+1.6
2,073,602	-				+0.1
2,073,988	+				-0.2
2,073,988	+				+0.8
2,073,989	-				+1.1
2,074,075	+				+0.3
2,074,143	+				-0.1
2,074,143	+				+0.6
2,074,143	+				+0.5
2,074,143	+				-0.8
2,074,143	+				-0.1
2,074,144	-				+0.1
2,074,190	-				-0.4
2,074,221	-				+0.9
2,074,351	+		PP_1850	0.13	-1.4
2,074,351	+		PP_1850	0.13	+0.4
2,074,352	-		PP_1850	0.14	+1.9
2,074,352	-		PP_1850	0.14	+1.8
2,074,361	+		PP_1850	0.14	+0.7
2,074,361	+		PP_1850	0.14	-0.2
2,074,361	+		PP_1850	0.14	+1.6
2,074,361	+		PP_1850	0.14	+0.4
2,074,361	+		PP_1850	0.14	-0.7
2,074,361	+		PP_1850	0.14	+0.7
2,074,361	+		PP_1850	0.14	+0.8
2,074,361	-		PP_1850	0.14	-0.2
2,074,362	-		PP_1850	0.14	-1.5
2,074,362	-		PP_1850	0.14	-0.8
2,074,362	-		PP_1850	0.14	+0.9
2,074,362	-		PP_1850	0.14	-0.6