Strain Fitness in Escherichia coli BW25113 around b4090

Experiment: M9 with Methotrexate 0.1 mM 24 hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Methotrexate 0.1 mM 24 hr
4,310,387	+	rpiR	b4089	0.30	+1.2
4,310,395	-	rpiR	b4089	0.30	+0.8
4,310,395	-	rpiR	b4089	0.30	+0.3
4,310,396	-	rpiR	b4089	0.31	-0.3
4,310,399	+	rpiR	b4089	0.31	-0.8
4,310,407	-	rpiR	b4089	0.32	-0.2
4,310,407	-	rpiR	b4089	0.32	-0.3
4,310,415	-	rpiR	b4089	0.33	+0.1
4,310,415	-	rpiR	b4089	0.33	-0.4
4,310,415	-	rpiR	b4089	0.33	-0.5
4,310,420	-	rpiR	b4089	0.33	-0.1
4,310,425	-	rpiR	b4089	0.34	+0.7
4,310,425	-	rpiR	b4089	0.34	+0.2
4,310,431	+	rpiR	b4089	0.34	+1.3
4,310,432	+	rpiR	b4089	0.35	+0.7
4,310,432	+	rpiR	b4089	0.35	-0.2
4,310,432	+	rpiR	b4089	0.35	+0.8
4,310,432	+	rpiR	b4089	0.35	-1.2
4,310,433	+	rpiR	b4089	0.35	-0.1
4,310,433	+	rpiR	b4089	0.35	+0.2
4,310,438	+	rpiR	b4089	0.35	-0.2
4,310,441	-	rpiR	b4089	0.36	-0.8
4,310,441	-	rpiR	b4089	0.36	-0.6
4,310,442	-	rpiR	b4089	0.36	+0.2
4,310,454	-	rpiR	b4089	0.37	+0.5
4,310,456	-	rpiR	b4089	0.37	+1.0
4,310,475	+	rpiR	b4089	0.39	-0.5
4,310,475	+	rpiR	b4089	0.39	-0.8
4,310,480	-	rpiR	b4089	0.40	-0.3
4,310,484	-	rpiR	b4089	0.40	-0.3
4,310,484	-				+1.2
4,310,484	-	rpiR	b4089	0.40	+0.3
4,310,484	-	rpiR	b4089	0.40	+0.2
4,310,487	+	rpiR	b4089	0.41	-0.2
4,310,489	+	rpiR	b4089	0.41	+0.1
4,310,489	+	rpiR	b4089	0.41	+0.6
4,310,494	+	rpiR	b4089	0.42	-0.7
4,310,494	-	rpiR	b4089	0.42	-0.3
4,310,494	-	rpiR	b4089	0.42	-0.6
4,310,499	+	rpiR	b4089	0.42	+0.5
4,310,499	+	rpiR	b4089	0.42	-1.1
4,310,508	+	rpiR	b4089	0.43	-0.3
4,310,508	+	rpiR	b4089	0.43	+0.2
4,310,553	-	rpiR	b4089	0.48	+0.2
4,310,564	-	rpiR	b4089	0.49	-0.5
4,310,564	-	rpiR	b4089	0.49	+0.6
4,310,572	-	rpiR	b4089	0.50	+0.1
4,310,596	-	rpiR	b4089	0.53	-0.1
4,310,706	-	rpiR	b4089	0.65	-0.8
4,310,739	-	rpiR	b4089	0.69	+0.7
4,310,739	-	rpiR	b4089	0.69	+1.2
4,310,789	-	rpiR	b4089	0.75	+0.3
4,310,789	-	rpiR	b4089	0.75	+0.2
4,310,869	-	rpiR	b4089	0.84	-0.0
4,310,880	-	rpiR	b4089	0.85	-0.0
4,310,886	-	rpiR	b4089	0.86	-1.3
4,310,886	-	rpiR	b4089	0.86	-0.5
4,310,919	-	rpiR	b4089	0.89	+0.2
4,310,919	-	rpiR	b4089	0.89	+0.3
4,310,943	-				+0.3
4,310,969	+				-0.2
4,310,969	+				-0.3
4,310,969	+				+0.6
4,310,969	+				-0.2
4,310,971	-				+0.2
4,310,977	-				+0.4
4,310,977	-				-0.3
4,310,977	-				-1.0
4,310,977	-				-0.0
4,310,978	-				-0.3
4,310,992	+				-0.6
4,311,021	+				-0.2
4,311,052	-				+0.2
4,311,056	-				-0.1
4,311,242	+				-0.8
4,311,242	+				+1.2
4,311,499	-	rpiB	b4090	0.28	-0.8
4,311,629	+	rpiB	b4090	0.57	+0.5
4,311,639	+	rpiB	b4090	0.59	-0.1
4,311,639	+	rpiB	b4090	0.59	-0.3
4,311,674	-	rpiB	b4090	0.67	+0.5
4,311,710	+	rpiB	b4090	0.75	+0.7
4,311,744	+	rpiB	b4090	0.82	-0.5
4,311,744	+	rpiB	b4090	0.82	-0.2
4,311,744	+	rpiB	b4090	0.82	-0.0
4,311,754	+	rpiB	b4090	0.85	+0.3
4,311,756	+	rpiB	b4090	0.85	-0.2
4,311,756	+	rpiB	b4090	0.85	+0.2
4,311,756	+	rpiB	b4090	0.85	+0.1
4,311,797	+				-0.0
4,311,852	-				-0.8
4,311,852	-				+0.9
4,311,889	-				-0.0
4,311,933	-	yjdP	b4487	0.13	-0.2
4,311,933	-	yjdP	b4487	0.13	+0.1
4,311,943	-	yjdP	b4487	0.16	-0.2
4,311,969	-	yjdP	b4487	0.24	-0.4
4,311,969	-	yjdP	b4487	0.24	+0.6
4,311,983	-	yjdP	b4487	0.28	+0.5
4,311,983	-	yjdP	b4487	0.28	-0.4
4,312,006	+	yjdP	b4487	0.35	+0.3
4,312,006	+	yjdP	b4487	0.35	+0.2
4,312,006	+	yjdP	b4487	0.35	+0.2
4,312,020	-	yjdP	b4487	0.39	+0.4
4,312,068	-	yjdP	b4487	0.54	+0.0
4,312,193	+				-1.0
4,312,202	+				-0.3
4,312,227	-				+0.1
4,312,256	+				+0.3
4,312,263	-				+0.3
4,312,338	-				+0.1
4,312,375	+				-0.4
4,312,418	-				+0.1
4,312,418	-				+0.1
4,312,567	+	phnP	b4092	0.26	+1.6
4,312,658	-	phnP	b4092	0.38	-0.4
4,312,658	-	phnP	b4092	0.38	-0.1
4,312,663	-	phnP	b4092	0.39	+0.6
4,312,663	-	phnP	b4092	0.39	-0.2
4,312,668	-	phnP	b4092	0.40	-0.5
4,312,668	-	phnP	b4092	0.40	-0.1
4,312,700	+	phnP	b4092	0.44	-0.4
4,312,714	-	phnP	b4092	0.46	+0.1
4,312,720	+	phnP	b4092	0.47	+0.0
4,312,720	+	phnP	b4092	0.47	-1.1
4,312,721	-	phnP	b4092	0.47	-0.4
4,312,728	-	phnP	b4092	0.48	-0.2
4,312,788	-	phnP	b4092	0.55	+0.3
4,312,803	+	phnP	b4092	0.57	+0.2
4,312,808	+	phnP	b4092	0.58	-0.1