Strain Fitness in Pseudomonas putida KT2440 around PP_3964

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
4,473,017	+				-0.0
4,473,017	+				-0.1
4,473,057	+				-1.3
4,473,058	-				-0.7
4,473,198	+				+0.3
4,473,199	-				-0.1
4,473,271	+				-0.5
4,473,271	+				-0.1
4,473,271	+				+0.3
4,473,272	-				+0.1
4,473,272	-				+0.4
4,473,272	-				-0.2
4,473,276	+				+0.5
4,473,277	-				-0.3
4,473,300	+				-0.5
4,473,300	+				-0.2
4,473,300	+				-0.6
4,473,300	+				+0.2
4,473,300	+				-0.1
4,473,300	+				+0.1
4,473,300	+				-0.3
4,473,301	-				-0.8
4,473,301	-				-0.4
4,473,301	-				+0.2
4,473,301	-				-0.3
4,473,301	-				-0.4
4,473,301	-				+0.2
4,473,304	+				+0.2
4,473,304	+				+0.5
4,473,304	+				-0.1
4,473,304	+				-0.1
4,473,304	+				-0.5
4,473,304	+				+0.1
4,473,304	+				+0.0
4,473,305	-				-0.0
4,473,305	-				+0.5
4,473,305	-				-0.5
4,473,305	-				-0.3
4,473,305	-				-0.8
4,473,324	+				+0.1
4,473,325	-				-0.2
4,473,334	+				-0.3
4,473,334	+				+0.0
4,473,335	-				-0.4
4,473,343	+				-0.2
4,473,344	-				-0.8
4,473,344	-				+0.5
4,473,344	-				-0.8
4,473,346	+				+0.3
4,473,346	+				+0.3
4,473,347	-				+0.1
4,473,347	-				+0.3
4,473,347	-				-0.5
4,473,347	-				-0.3
4,473,372	+				-0.2
4,473,372	+				-0.3
4,473,372	+				-0.4
4,473,723	+		PP_3963	0.80	+0.7
4,473,724	-		PP_3963	0.81	-0.1
4,473,724	-		PP_3963	0.81	+0.0
4,473,744	+		PP_3963	0.87	-0.3
4,473,744	+		PP_3963	0.87	+0.3
4,473,745	-		PP_3963	0.87	-0.4
4,473,745	-		PP_3963	0.87	-1.6
4,473,792	+				-0.6
4,473,793	-				-0.2
4,473,880	-				-0.2
4,473,897	-				+1.8
4,473,956	+				-0.6
4,473,970	+				-1.1
4,473,996	+				-0.7
4,473,996	+				-0.6
4,473,996	+				-0.3
4,473,997	-				-1.2
4,473,997	-				+0.6
4,474,092	-				-0.4
4,474,152	+				-0.6
4,474,295	+		PP_3964	0.19	-0.8
4,474,399	+		PP_3964	0.26	-0.3
4,474,451	+		PP_3964	0.29	-0.2
4,474,452	-		PP_3964	0.29	-0.6
4,474,452	-		PP_3964	0.29	-0.5
4,474,673	+		PP_3964	0.44	-0.8
4,474,725	-		PP_3964	0.47	-1.6
4,474,725	-		PP_3964	0.47	-0.1
4,475,287	-		PP_3964	0.84	-0.2
4,475,600	+				-0.5
4,475,611	-				+0.4
4,475,611	-				-0.1
4,475,816	+		PP_3965	0.65	-0.5
4,476,434	+				-0.9
4,476,434	+				-0.2
4,476,434	+				+0.6
4,476,435	-				+0.1