Strain Fitness in Pseudomonas putida KT2440 around PP_1855

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
2,077,816	-		PP_1853	0.57	+0.6
2,077,816	-		PP_1853	0.57	-0.9
2,078,031	-		PP_1853	0.80	-0.1
2,078,072	+		PP_1853	0.85	-0.4
2,078,072	+		PP_1853	0.85	+0.2
2,078,072	+		PP_1853	0.85	-1.3
2,078,072	+		PP_1853	0.85	-0.2
2,078,073	-		PP_1853	0.85	+0.5
2,078,073	-		PP_1853	0.85	-1.2
2,078,073	-		PP_1853	0.85	-0.5
2,078,089	+		PP_1853	0.86	-0.1
2,078,090	-		PP_1853	0.87	-0.6
2,078,100	-		PP_1853	0.88	-0.1
2,078,100	-		PP_1853	0.88	+0.1
2,078,221	+				+0.7
2,078,222	-				+0.1
2,078,268	+				-0.5
2,078,355	-				+0.6
2,078,355	-				+0.3
2,078,540	+		PP_1854	0.45	-0.3
2,078,541	-		PP_1854	0.45	-0.7
2,078,541	-		PP_1854	0.45	-0.0
2,078,541	-		PP_1854	0.45	-0.3
2,078,566	-		PP_1854	0.50	+0.3
2,078,589	+		PP_1854	0.55	-0.8
2,078,590	-		PP_1854	0.55	-0.3
2,078,590	-		PP_1854	0.55	-0.3
2,078,590	-		PP_1854	0.55	-0.2
2,078,646	+		PP_1854	0.67	-0.5
2,078,646	+		PP_1854	0.67	+0.0
2,078,646	+		PP_1854	0.67	-0.2
2,078,647	-		PP_1854	0.67	-0.7
2,078,808	-				-0.3
2,078,963	+		PP_1855	0.40	-0.7
2,078,964	-		PP_1855	0.40	-1.1
2,078,964	-		PP_1855	0.40	+0.9
2,079,043	+		PP_1855	0.60	-0.8
2,079,044	-		PP_1855	0.60	-0.3
2,079,124	+		PP_1855	0.80	-1.0
2,079,224	-				-0.1
2,079,288	-				-0.0