Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS17645 and ABZR88_RS17650 are separated by 8 nucleotides ABZR88_RS17650 and ABZR88_RS17655 overlap by 4 nucleotides ABZR88_RS17655 and ABZR88_RS17660 are separated by 314 nucleotides
ABZR88_RS17645: ABZR88_RS17645 - hypothetical protein, at 4,315,484 to 4,316,638
_RS17645
ABZR88_RS17650: ABZR88_RS17650 - glycosyltransferase, at 4,316,647 to 4,317,753
_RS17650
ABZR88_RS17655: ABZR88_RS17655 - DapH/DapD/GlmU-related protein, at 4,317,750 to 4,317,965
_RS17655
ABZR88_RS17660: ABZR88_RS17660 - glycosyltransferase, at 4,318,280 to 4,319,407
_RS17660
Position (kb)
4316
4317
4318 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4315.681 kb on + strand, within ABZR88_RS17645 at 4315.703 kb on + strand, within ABZR88_RS17645 at 4315.969 kb on + strand, within ABZR88_RS17645 at 4316.005 kb on + strand, within ABZR88_RS17645 at 4316.130 kb on + strand, within ABZR88_RS17645 at 4316.225 kb on - strand, within ABZR88_RS17645 at 4316.225 kb on - strand, within ABZR88_RS17645 at 4316.226 kb on + strand, within ABZR88_RS17645 at 4316.231 kb on + strand, within ABZR88_RS17645 at 4316.487 kb on + strand, within ABZR88_RS17645 at 4316.526 kb on + strand at 4316.527 kb on - strand at 4316.580 kb on - strand at 4316.671 kb on + strand at 4316.675 kb on - strand at 4316.717 kb on + strand at 4316.717 kb on + strand at 4316.882 kb on - strand, within ABZR88_RS17650 at 4316.939 kb on - strand, within ABZR88_RS17650 at 4317.075 kb on - strand, within ABZR88_RS17650 at 4317.075 kb on - strand, within ABZR88_RS17650 at 4317.247 kb on + strand, within ABZR88_RS17650 at 4317.309 kb on - strand, within ABZR88_RS17650 at 4317.370 kb on + strand, within ABZR88_RS17650 at 4317.508 kb on + strand, within ABZR88_RS17650 at 4317.530 kb on - strand, within ABZR88_RS17650 at 4317.671 kb on - strand at 4317.781 kb on + strand, within ABZR88_RS17655 at 4317.915 kb on - strand, within ABZR88_RS17655 at 4318.034 kb on + strand at 4318.034 kb on + strand at 4318.250 kb on + strand at 4318.298 kb on + strand at 4318.395 kb on - strand, within ABZR88_RS17660 at 4318.406 kb on + strand, within ABZR88_RS17660 at 4318.407 kb on - strand, within ABZR88_RS17660 at 4318.429 kb on + strand, within ABZR88_RS17660 at 4318.506 kb on + strand, within ABZR88_RS17660 at 4318.508 kb on + strand, within ABZR88_RS17660 at 4318.538 kb on + strand, within ABZR88_RS17660 at 4318.561 kb on - strand, within ABZR88_RS17660 at 4318.561 kb on - strand, within ABZR88_RS17660 at 4318.745 kb on - strand, within ABZR88_RS17660
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 4,315,681 + ABZR88_RS17645 0.17 -1.6 4,315,703 + ABZR88_RS17645 0.19 -4.2 4,315,969 + ABZR88_RS17645 0.42 -2.6 4,316,005 + ABZR88_RS17645 0.45 -1.4 4,316,130 + ABZR88_RS17645 0.56 -2.4 4,316,225 - ABZR88_RS17645 0.64 -1.8 4,316,225 - ABZR88_RS17645 0.64 -2.6 4,316,226 + ABZR88_RS17645 0.64 -2.7 4,316,231 + ABZR88_RS17645 0.65 -2.2 4,316,487 + ABZR88_RS17645 0.87 -3.5 4,316,526 + -1.7 4,316,527 - -0.9 4,316,580 - -2.7 4,316,671 + -1.5 4,316,675 - +0.1 4,316,717 + -1.2 4,316,717 + -1.4 4,316,882 - ABZR88_RS17650 0.21 -3.4 4,316,939 - ABZR88_RS17650 0.26 -2.7 4,317,075 - ABZR88_RS17650 0.39 -3.5 4,317,075 - ABZR88_RS17650 0.39 -2.4 4,317,247 + ABZR88_RS17650 0.54 -3.4 4,317,309 - ABZR88_RS17650 0.60 -3.0 4,317,370 + ABZR88_RS17650 0.65 -3.7 4,317,508 + ABZR88_RS17650 0.78 +1.1 4,317,530 - ABZR88_RS17650 0.80 -3.3 4,317,671 - -1.9 4,317,781 + ABZR88_RS17655 0.14 +0.2 4,317,915 - ABZR88_RS17655 0.76 -0.0 4,318,034 + -1.2 4,318,034 + -1.3 4,318,250 + +0.7 4,318,298 + -1.0 4,318,395 - ABZR88_RS17660 0.10 -2.4 4,318,406 + ABZR88_RS17660 0.11 -2.9 4,318,407 - ABZR88_RS17660 0.11 -2.4 4,318,429 + ABZR88_RS17660 0.13 -1.4 4,318,506 + ABZR88_RS17660 0.20 +0.1 4,318,508 + ABZR88_RS17660 0.20 -2.0 4,318,538 + ABZR88_RS17660 0.23 -1.7 4,318,561 - ABZR88_RS17660 0.25 -2.4 4,318,561 - ABZR88_RS17660 0.25 -2.2 4,318,745 - ABZR88_RS17660 0.41 +0.1
Or see this region's nucleotide sequence