Experiment: Pullulan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS17510 and ABZR88_RS17515 are separated by 202 nucleotides ABZR88_RS17515 and ABZR88_RS17520 are separated by 457 nucleotides
ABZR88_RS17510: ABZR88_RS17510 - WecB/TagA/CpsF family glycosyltransferase, at 4,283,186 to 4,283,929
_RS17510
ABZR88_RS17515: ABZR88_RS17515 - ChbG/HpnK family deacetylase, at 4,284,132 to 4,284,878
_RS17515
ABZR88_RS17520: ABZR88_RS17520 - polysaccharide biosynthesis/export family protein, at 4,285,336 to 4,286,124
_RS17520
Position (kb)
4284
4285 Strain fitness (log2 ratio)
-2
-1
0
1 at 4283.185 kb on - strand at 4283.188 kb on - strand at 4283.210 kb on - strand at 4283.233 kb on - strand at 4283.251 kb on - strand at 4283.462 kb on + strand, within ABZR88_RS17510 at 4283.466 kb on - strand, within ABZR88_RS17510 at 4283.466 kb on - strand, within ABZR88_RS17510 at 4283.670 kb on + strand, within ABZR88_RS17510 at 4283.671 kb on - strand, within ABZR88_RS17510 at 4283.741 kb on - strand, within ABZR88_RS17510 at 4283.846 kb on - strand, within ABZR88_RS17510 at 4284.012 kb on + strand at 4284.030 kb on - strand at 4284.114 kb on - strand at 4284.163 kb on + strand at 4284.374 kb on + strand, within ABZR88_RS17515 at 4284.377 kb on + strand, within ABZR88_RS17515 at 4284.417 kb on - strand, within ABZR88_RS17515 at 4284.510 kb on - strand, within ABZR88_RS17515 at 4284.527 kb on + strand, within ABZR88_RS17515 at 4284.531 kb on + strand, within ABZR88_RS17515 at 4284.779 kb on + strand, within ABZR88_RS17515 at 4284.784 kb on + strand, within ABZR88_RS17515 at 4284.807 kb on + strand at 4284.851 kb on + strand at 4284.859 kb on - strand at 4284.975 kb on + strand at 4284.976 kb on - strand at 4284.980 kb on - strand at 4285.102 kb on - strand at 4285.179 kb on + strand at 4285.186 kb on + strand at 4285.219 kb on + strand at 4285.371 kb on + strand at 4285.484 kb on + strand, within ABZR88_RS17520 at 4285.591 kb on - strand, within ABZR88_RS17520 at 4285.613 kb on + strand, within ABZR88_RS17520 at 4285.650 kb on + strand, within ABZR88_RS17520 at 4285.651 kb on - strand, within ABZR88_RS17520 at 4285.651 kb on - strand, within ABZR88_RS17520 at 4285.721 kb on + strand, within ABZR88_RS17520 at 4285.861 kb on - strand, within ABZR88_RS17520
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan (C) remove 4,283,185 - -0.3 4,283,188 - +0.4 4,283,210 - +0.1 4,283,233 - -0.1 4,283,251 - -1.4 4,283,462 + ABZR88_RS17510 0.37 -0.6 4,283,466 - ABZR88_RS17510 0.38 -0.4 4,283,466 - ABZR88_RS17510 0.38 -0.9 4,283,670 + ABZR88_RS17510 0.65 -0.7 4,283,671 - ABZR88_RS17510 0.65 -1.4 4,283,741 - ABZR88_RS17510 0.75 -0.9 4,283,846 - ABZR88_RS17510 0.89 +0.7 4,284,012 + +0.2 4,284,030 - -0.3 4,284,114 - +1.5 4,284,163 + -1.1 4,284,374 + ABZR88_RS17515 0.32 -1.5 4,284,377 + ABZR88_RS17515 0.33 +0.1 4,284,417 - ABZR88_RS17515 0.38 -1.0 4,284,510 - ABZR88_RS17515 0.51 -0.7 4,284,527 + ABZR88_RS17515 0.53 +0.6 4,284,531 + ABZR88_RS17515 0.53 -0.7 4,284,779 + ABZR88_RS17515 0.87 -1.0 4,284,784 + ABZR88_RS17515 0.87 -0.3 4,284,807 + -0.5 4,284,851 + -0.2 4,284,859 - -0.3 4,284,975 + -0.3 4,284,976 - -0.1 4,284,980 - +0.6 4,285,102 - -1.0 4,285,179 + +0.4 4,285,186 + +0.6 4,285,219 + +1.1 4,285,371 + -0.1 4,285,484 + ABZR88_RS17520 0.19 -1.1 4,285,591 - ABZR88_RS17520 0.32 -0.5 4,285,613 + ABZR88_RS17520 0.35 -1.1 4,285,650 + ABZR88_RS17520 0.40 -1.9 4,285,651 - ABZR88_RS17520 0.40 -0.9 4,285,651 - ABZR88_RS17520 0.40 -0.8 4,285,721 + ABZR88_RS17520 0.49 -1.2 4,285,861 - ABZR88_RS17520 0.67 -0.8
Or see this region's nucleotide sequence