Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sodA and grxD are separated by 115 nucleotides grxD and yqjQ overlap by 4 nucleotides yqjQ and marC are separated by 54 nucleotides marC and OKGIIK_03075 are separated by 99 nucleotides
OKGIIK_03055: sodA - superoxide dismutase [Fe], at 693,974 to 694,552
sodA
OKGIIK_03060: grxD - Grx4 family monothiol glutaredoxin, at 694,668 to 694,991
grxD
OKGIIK_03065: yqjQ - Short-chain dehydrogenase, at 694,988 to 695,758
yqjQ
OKGIIK_03070: marC - YhgN family NAAT transporter, at 695,813 to 696,424
marC
OKGIIK_03075: OKGIIK_03075 - glycerol acyltransferase, at 696,524 to 698,236
_03075
Position (kb) 694
695
696 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.629 kb on + strand at 694.629 kb on + strand at 694.629 kb on + strand at 694.629 kb on + strand at 694.629 kb on + strand at 694.629 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.649 kb on - strand at 694.649 kb on - strand at 694.649 kb on - strand at 694.649 kb on - strand at 694.649 kb on - strand at 694.649 kb on - strand at 694.649 kb on - strand at 694.673 kb on + strand at 694.674 kb on - strand at 695.078 kb on + strand, within yqjQ at 695.079 kb on - strand, within yqjQ at 695.079 kb on - strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.175 kb on - strand, within yqjQ at 695.175 kb on - strand, within yqjQ at 695.175 kb on - strand, within yqjQ at 695.175 kb on - strand, within yqjQ at 695.175 kb on - strand, within yqjQ at 695.175 kb on - strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.253 kb on - strand, within yqjQ at 695.253 kb on - strand, within yqjQ at 695.253 kb on - strand, within yqjQ at 695.636 kb on + strand, within yqjQ at 695.636 kb on + strand, within yqjQ at 695.637 kb on - strand, within yqjQ at 695.637 kb on - strand, within yqjQ at 695.637 kb on - strand, within yqjQ at 695.696 kb on + strand at 695.696 kb on + strand at 695.696 kb on + strand at 695.696 kb on + strand at 695.696 kb on + strand at 695.696 kb on + strand at 695.696 kb on + strand at 695.697 kb on - strand at 695.697 kb on - strand at 695.697 kb on - strand at 695.697 kb on - strand at 696.084 kb on + strand, within marC at 696.084 kb on + strand, within marC at 696.084 kb on + strand, within marC at 696.084 kb on + strand, within marC at 696.084 kb on + strand, within marC at 696.084 kb on + strand, within marC at 696.084 kb on + strand, within marC at 696.084 kb on + strand, within marC at 696.084 kb on + strand, within marC at 696.084 kb on + strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.085 kb on - strand, within marC at 696.211 kb on + strand, within marC at 696.212 kb on - strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.296 kb on + strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.297 kb on - strand, within marC at 696.375 kb on + strand at 696.376 kb on - strand at 696.482 kb on + strand at 696.482 kb on + strand at 696.482 kb on + strand at 696.482 kb on + strand at 696.483 kb on - strand at 696.483 kb on - strand at 696.483 kb on - strand at 696.483 kb on - strand at 696.532 kb on + strand at 696.532 kb on + strand at 696.532 kb on + strand at 696.532 kb on + strand at 696.532 kb on + strand at 696.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 694,624 + +2.0 694,624 + -2.2 694,624 + +0.1 694,624 + +2.3 694,624 + -3.1 694,624 + -1.3 694,624 + -1.0 694,624 + -1.6 694,624 + -2.5 694,624 + -0.9 694,624 + -0.6 694,624 + -0.6 694,624 + -0.6 694,624 + -0.6 694,624 + -1.3 694,624 + -2.0 694,624 + -1.1 694,625 - -2.3 694,625 - -1.2 694,625 - -0.0 694,625 - -0.6 694,625 - -0.8 694,625 - -0.2 694,625 - -1.3 694,625 - -1.6 694,625 - +0.6 694,625 - -0.1 694,625 - -2.3 694,625 - +0.2 694,625 - -2.0 694,625 - -0.6 694,625 - -0.0 694,625 - -0.6 694,625 - +0.4 694,625 - -0.6 694,625 - -1.3 694,625 - +0.2 694,625 - -1.5 694,625 - -1.3 694,625 - -2.4 694,625 - -2.8 694,625 - -1.3 694,625 - +1.0 694,625 - -0.7 694,625 - -1.0 694,625 - -0.2 694,625 - -0.0 694,625 - -0.8 694,625 - +0.5 694,625 - -0.0 694,625 - -1.6 694,625 - -0.6 694,625 - -1.8 694,629 + -1.1 694,629 + -0.1 694,629 + +0.6 694,629 + +2.6 694,629 + -0.2 694,629 + -1.5 694,648 + +0.4 694,648 + -2.0 694,648 + -0.0 694,648 + +1.0 694,648 + -1.6 694,648 + -2.2 694,648 + +2.0 694,648 + -1.5 694,648 + +0.7 694,648 + -0.3 694,648 + -1.2 694,648 + -1.8 694,648 + -0.3 694,648 + -1.0 694,648 + +1.0 694,649 - -0.6 694,649 - -2.2 694,649 - -2.5 694,649 - -4.5 694,649 - -0.6 694,649 - -0.6 694,649 - -1.3 694,673 + -0.0 694,674 - -0.2 695,078 + yqjQ OKGIIK_03065 0.12 -0.5 695,079 - yqjQ OKGIIK_03065 0.12 -1.6 695,079 - yqjQ OKGIIK_03065 0.12 -1.6 695,174 + yqjQ OKGIIK_03065 0.24 -1.8 695,174 + yqjQ OKGIIK_03065 0.24 +1.6 695,174 + yqjQ OKGIIK_03065 0.24 -2.6 695,174 + yqjQ OKGIIK_03065 0.24 -2.3 695,174 + yqjQ OKGIIK_03065 0.24 -0.2 695,174 + yqjQ OKGIIK_03065 0.24 -1.8 695,174 + yqjQ OKGIIK_03065 0.24 -2.5 695,174 + yqjQ OKGIIK_03065 0.24 -2.5 695,174 + yqjQ OKGIIK_03065 0.24 -1.0 695,174 + yqjQ OKGIIK_03065 0.24 -0.2 695,174 + yqjQ OKGIIK_03065 0.24 -0.6 695,174 + yqjQ OKGIIK_03065 0.24 -2.6 695,174 + yqjQ OKGIIK_03065 0.24 -0.6 695,174 + yqjQ OKGIIK_03065 0.24 -0.8 695,175 - yqjQ OKGIIK_03065 0.24 -0.6 695,175 - yqjQ OKGIIK_03065 0.24 -1.0 695,175 - yqjQ OKGIIK_03065 0.24 -1.8 695,175 - yqjQ OKGIIK_03065 0.24 -1.0 695,175 - yqjQ OKGIIK_03065 0.24 -2.3 695,175 - yqjQ OKGIIK_03065 0.24 -2.9 695,252 + yqjQ OKGIIK_03065 0.34 +1.0 695,252 + yqjQ OKGIIK_03065 0.34 -3.0 695,252 + yqjQ OKGIIK_03065 0.34 -1.6 695,252 + yqjQ OKGIIK_03065 0.34 +1.0 695,252 + yqjQ OKGIIK_03065 0.34 -1.0 695,252 + yqjQ OKGIIK_03065 0.34 -0.8 695,252 + yqjQ OKGIIK_03065 0.34 -2.6 695,252 + yqjQ OKGIIK_03065 0.34 -1.0 695,252 + yqjQ OKGIIK_03065 0.34 -1.3 695,252 + yqjQ OKGIIK_03065 0.34 +0.4 695,252 + yqjQ OKGIIK_03065 0.34 -1.3 695,253 - yqjQ OKGIIK_03065 0.34 -2.3 695,253 - yqjQ OKGIIK_03065 0.34 -0.3 695,253 - yqjQ OKGIIK_03065 0.34 -1.6 695,636 + yqjQ OKGIIK_03065 0.84 -0.8 695,636 + yqjQ OKGIIK_03065 0.84 -2.5 695,637 - yqjQ OKGIIK_03065 0.84 -2.0 695,637 - yqjQ OKGIIK_03065 0.84 -0.6 695,637 - yqjQ OKGIIK_03065 0.84 -0.6 695,696 + -0.2 695,696 + -2.7 695,696 + -1.8 695,696 + -1.0 695,696 + -1.6 695,696 + -2.7 695,696 + -1.3 695,697 - -1.8 695,697 - +1.0 695,697 - -3.3 695,697 - -0.6 696,084 + marC OKGIIK_03070 0.44 -2.2 696,084 + marC OKGIIK_03070 0.44 -1.8 696,084 + marC OKGIIK_03070 0.44 -1.0 696,084 + marC OKGIIK_03070 0.44 -2.2 696,084 + marC OKGIIK_03070 0.44 -2.7 696,084 + marC OKGIIK_03070 0.44 +1.0 696,084 + marC OKGIIK_03070 0.44 -0.6 696,084 + marC OKGIIK_03070 0.44 -3.1 696,084 + marC OKGIIK_03070 0.44 -2.7 696,084 + marC OKGIIK_03070 0.44 -2.8 696,085 - marC OKGIIK_03070 0.44 -2.8 696,085 - marC OKGIIK_03070 0.44 -2.0 696,085 - marC OKGIIK_03070 0.44 -1.6 696,085 - marC OKGIIK_03070 0.44 -2.5 696,085 - marC OKGIIK_03070 0.44 -0.6 696,085 - marC OKGIIK_03070 0.44 -2.2 696,085 - marC OKGIIK_03070 0.44 +1.0 696,085 - marC OKGIIK_03070 0.44 -0.6 696,085 - marC OKGIIK_03070 0.44 -1.0 696,085 - marC OKGIIK_03070 0.44 -1.3 696,085 - marC OKGIIK_03070 0.44 -0.8 696,085 - marC OKGIIK_03070 0.44 -1.8 696,211 + marC OKGIIK_03070 0.65 -3.6 696,212 - marC OKGIIK_03070 0.65 -2.3 696,296 + marC OKGIIK_03070 0.79 -2.2 696,296 + marC OKGIIK_03070 0.79 +1.0 696,296 + marC OKGIIK_03070 0.79 -2.7 696,296 + marC OKGIIK_03070 0.79 -0.6 696,296 + marC OKGIIK_03070 0.79 -1.0 696,296 + marC OKGIIK_03070 0.79 -3.4 696,296 + marC OKGIIK_03070 0.79 -2.5 696,296 + marC OKGIIK_03070 0.79 -1.1 696,296 + marC OKGIIK_03070 0.79 -2.5 696,296 + marC OKGIIK_03070 0.79 -3.1 696,296 + marC OKGIIK_03070 0.79 -3.3 696,296 + marC OKGIIK_03070 0.79 -1.3 696,296 + marC OKGIIK_03070 0.79 -0.6 696,296 + marC OKGIIK_03070 0.79 -1.6 696,296 + marC OKGIIK_03070 0.79 -2.2 696,296 + marC OKGIIK_03070 0.79 -3.0 696,297 - marC OKGIIK_03070 0.79 +1.0 696,297 - marC OKGIIK_03070 0.79 -2.7 696,297 - marC OKGIIK_03070 0.79 -2.2 696,297 - marC OKGIIK_03070 0.79 -2.5 696,297 - marC OKGIIK_03070 0.79 -2.0 696,297 - marC OKGIIK_03070 0.79 -2.2 696,297 - marC OKGIIK_03070 0.79 -0.0 696,297 - marC OKGIIK_03070 0.79 -2.0 696,297 - marC OKGIIK_03070 0.79 +1.0 696,297 - marC OKGIIK_03070 0.79 -3.5 696,297 - marC OKGIIK_03070 0.79 -0.0 696,297 - marC OKGIIK_03070 0.79 -2.2 696,375 + -1.0 696,376 - -1.0 696,482 + -1.3 696,482 + -1.6 696,482 + -1.6 696,482 + -0.1 696,483 - +3.2 696,483 - +0.2 696,483 - +1.6 696,483 - -1.5 696,532 + +1.4 696,532 + +0.1 696,532 + -0.0 696,532 + -1.6 696,532 + -2.3 696,533 - -2.6
Or see this region's nucleotide sequence