Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_02320

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntpurM and OKGIIK_02320 are separated by 152 nucleotidesOKGIIK_02320 and OKGIIK_02325 are separated by 56 nucleotides OKGIIK_02315: purM - phosphoribosylformylglycinamidine cyclo-ligase, at 538,489 to 539,517 purM OKGIIK_02320: OKGIIK_02320 - DUF2066 domain-containing protein, at 539,670 to 540,650 _02320 OKGIIK_02325: OKGIIK_02325 - AI-2E family transporter, at 540,707 to 541,888 _02325 Position (kb) 539 540 541Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 538.830 kb on + strand, within purMat 538.830 kb on + strand, within purMat 538.830 kb on + strand, within purMat 538.830 kb on + strand, within purMat 538.831 kb on - strand, within purMat 538.831 kb on - strand, within purMat 538.831 kb on - strand, within purMat 538.841 kb on + strand, within purMat 538.841 kb on + strand, within purMat 538.841 kb on + strand, within purMat 538.841 kb on + strand, within purMat 538.842 kb on - strand, within purMat 538.936 kb on + strand, within purMat 538.944 kb on - strand, within purMat 539.063 kb on + strand, within purMat 539.078 kb on + strand, within purMat 539.078 kb on + strand, within purMat 539.078 kb on + strand, within purMat 539.079 kb on - strand, within purMat 539.079 kb on - strand, within purMat 539.079 kb on - strand, within purMat 539.079 kb on - strand, within purMat 539.079 kb on - strand, within purMat 539.201 kb on + strand, within purMat 539.498 kb on + strandat 539.551 kb on + strandat 539.660 kb on + strandat 539.660 kb on + strandat 539.660 kb on + strandat 539.660 kb on + strandat 539.757 kb on + strandat 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.875 kb on + strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.876 kb on - strand, within OKGIIK_02320at 539.880 kb on + strand, within OKGIIK_02320at 539.880 kb on + strand, within OKGIIK_02320at 539.880 kb on + strand, within OKGIIK_02320at 539.880 kb on + strand, within OKGIIK_02320at 539.880 kb on + strand, within OKGIIK_02320at 539.881 kb on - strand, within OKGIIK_02320at 539.881 kb on - strand, within OKGIIK_02320at 539.881 kb on - strand, within OKGIIK_02320at 539.928 kb on + strand, within OKGIIK_02320at 539.953 kb on + strand, within OKGIIK_02320at 539.953 kb on + strand, within OKGIIK_02320at 540.216 kb on + strand, within OKGIIK_02320at 540.216 kb on + strand, within OKGIIK_02320at 540.217 kb on - strand, within OKGIIK_02320at 540.217 kb on - strand, within OKGIIK_02320at 540.444 kb on + strand, within OKGIIK_02320at 540.444 kb on + strand, within OKGIIK_02320at 540.444 kb on + strand, within OKGIIK_02320at 540.445 kb on - strand, within OKGIIK_02320at 540.445 kb on - strand, within OKGIIK_02320at 540.445 kb on - strand, within OKGIIK_02320at 540.445 kb on - strand, within OKGIIK_02320at 540.445 kb on - strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.493 kb on + strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.494 kb on - strand, within OKGIIK_02320at 540.737 kb on + strandat 540.737 kb on + strandat 540.737 kb on + strandat 540.737 kb on + strandat 540.737 kb on + strandat 540.737 kb on + strandat 540.737 kb on + strandat 540.737 kb on + strandat 540.737 kb on + strandat 540.806 kb on + strandat 540.866 kb on + strand, within OKGIIK_02325at 540.866 kb on + strand, within OKGIIK_02325at 541.253 kb on + strand, within OKGIIK_02325at 541.253 kb on + strand, within OKGIIK_02325at 541.253 kb on + strand, within OKGIIK_02325at 541.253 kb on + strand, within OKGIIK_02325at 541.253 kb on + strand, within OKGIIK_02325at 541.253 kb on + strand, within OKGIIK_02325at 541.331 kb on + strand, within OKGIIK_02325at 541.331 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.412 kb on + strand, within OKGIIK_02325at 541.493 kb on + strand, within OKGIIK_02325at 541.613 kb on + strand, within OKGIIK_02325at 541.613 kb on + strand, within OKGIIK_02325at 541.613 kb on + strand, within OKGIIK_02325at 541.613 kb on + strand, within OKGIIK_02325at 541.613 kb on + strand, within OKGIIK_02325at 541.613 kb on + strand, within OKGIIK_02325

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
remove
538,830 + purM OKGIIK_02315 0.33 -2.8
538,830 + purM OKGIIK_02315 0.33 -2.3
538,830 + purM OKGIIK_02315 0.33 -1.0
538,830 + purM OKGIIK_02315 0.33 -2.5
538,831 - purM OKGIIK_02315 0.33 -1.8
538,831 - purM OKGIIK_02315 0.33 -1.8
538,831 - purM OKGIIK_02315 0.33 -1.8
538,841 + purM OKGIIK_02315 0.34 -3.3
538,841 + purM OKGIIK_02315 0.34 +1.0
538,841 + purM OKGIIK_02315 0.34 -2.3
538,841 + purM OKGIIK_02315 0.34 -1.6
538,842 - purM OKGIIK_02315 0.34 -2.0
538,936 + purM OKGIIK_02315 0.43 -1.3
538,944 - purM OKGIIK_02315 0.44 -1.8
539,063 + purM OKGIIK_02315 0.56 -2.0
539,078 + purM OKGIIK_02315 0.57 -1.8
539,078 + purM OKGIIK_02315 0.57 -2.6
539,078 + purM OKGIIK_02315 0.57 -1.0
539,079 - purM OKGIIK_02315 0.57 +1.0
539,079 - purM OKGIIK_02315 0.57 -2.0
539,079 - purM OKGIIK_02315 0.57 -0.0
539,079 - purM OKGIIK_02315 0.57 -1.3
539,079 - purM OKGIIK_02315 0.57 -1.6
539,201 + purM OKGIIK_02315 0.69 -1.6
539,498 + -1.6
539,551 + -1.0
539,660 + -0.0
539,660 + -0.9
539,660 + -2.5
539,660 + -1.6
539,757 + -0.0
539,875 + OKGIIK_02320 0.21 -1.3
539,875 + OKGIIK_02320 0.21 -1.8
539,875 + OKGIIK_02320 0.21 -0.6
539,875 + OKGIIK_02320 0.21 -0.1
539,875 + OKGIIK_02320 0.21 -2.4
539,875 + OKGIIK_02320 0.21 -0.3
539,875 + OKGIIK_02320 0.21 -2.3
539,875 + OKGIIK_02320 0.21 -1.3
539,875 + OKGIIK_02320 0.21 -1.8
539,875 + OKGIIK_02320 0.21 -3.0
539,875 + OKGIIK_02320 0.21 -0.6
539,875 + OKGIIK_02320 0.21 -2.9
539,875 + OKGIIK_02320 0.21 -0.6
539,875 + OKGIIK_02320 0.21 -2.5
539,875 + OKGIIK_02320 0.21 -0.0
539,875 + OKGIIK_02320 0.21 -0.8
539,875 + OKGIIK_02320 0.21 -2.0
539,875 + OKGIIK_02320 0.21 -1.8
539,875 + OKGIIK_02320 0.21 -0.7
539,875 + OKGIIK_02320 0.21 -0.2
539,875 + OKGIIK_02320 0.21 -3.3
539,875 + OKGIIK_02320 0.21 -2.9
539,875 + OKGIIK_02320 0.21 +1.0
539,875 + OKGIIK_02320 0.21 -2.0
539,876 - OKGIIK_02320 0.21 -0.6
539,876 - OKGIIK_02320 0.21 -1.2
539,876 - OKGIIK_02320 0.21 -1.8
539,876 - OKGIIK_02320 0.21 -0.2
539,876 - OKGIIK_02320 0.21 -1.0
539,876 - OKGIIK_02320 0.21 -1.1
539,876 - OKGIIK_02320 0.21 -1.4
539,876 - OKGIIK_02320 0.21 -1.6
539,876 - OKGIIK_02320 0.21 -1.6
539,876 - OKGIIK_02320 0.21 -1.6
539,876 - OKGIIK_02320 0.21 -0.3
539,876 - OKGIIK_02320 0.21 -0.6
539,876 - OKGIIK_02320 0.21 -0.6
539,876 - OKGIIK_02320 0.21 -3.0
539,876 - OKGIIK_02320 0.21 -2.8
539,876 - OKGIIK_02320 0.21 -1.0
539,876 - OKGIIK_02320 0.21 -2.3
539,880 + OKGIIK_02320 0.21 +2.2
539,880 + OKGIIK_02320 0.21 +0.4
539,880 + OKGIIK_02320 0.21 -0.0
539,880 + OKGIIK_02320 0.21 -2.8
539,880 + OKGIIK_02320 0.21 -2.6
539,881 - OKGIIK_02320 0.22 -1.8
539,881 - OKGIIK_02320 0.22 -1.6
539,881 - OKGIIK_02320 0.22 -1.3
539,928 + OKGIIK_02320 0.26 -0.6
539,953 + OKGIIK_02320 0.29 +0.4
539,953 + OKGIIK_02320 0.29 +1.0
540,216 + OKGIIK_02320 0.56 -1.0
540,216 + OKGIIK_02320 0.56 -0.0
540,217 - OKGIIK_02320 0.56 -0.6
540,217 - OKGIIK_02320 0.56 -0.9
540,444 + OKGIIK_02320 0.79 -0.8
540,444 + OKGIIK_02320 0.79 -1.6
540,444 + OKGIIK_02320 0.79 -1.3
540,445 - OKGIIK_02320 0.79 +1.6
540,445 - OKGIIK_02320 0.79 -1.0
540,445 - OKGIIK_02320 0.79 -1.0
540,445 - OKGIIK_02320 0.79 -0.6
540,445 - OKGIIK_02320 0.79 -3.0
540,493 + OKGIIK_02320 0.84 -2.3
540,493 + OKGIIK_02320 0.84 -1.3
540,493 + OKGIIK_02320 0.84 -1.8
540,493 + OKGIIK_02320 0.84 -2.8
540,493 + OKGIIK_02320 0.84 -0.8
540,493 + OKGIIK_02320 0.84 -2.8
540,493 + OKGIIK_02320 0.84 -2.5
540,493 + OKGIIK_02320 0.84 -0.4
540,493 + OKGIIK_02320 0.84 -0.6
540,493 + OKGIIK_02320 0.84 +1.0
540,493 + OKGIIK_02320 0.84 -2.3
540,493 + OKGIIK_02320 0.84 -2.6
540,493 + OKGIIK_02320 0.84 -0.3
540,493 + OKGIIK_02320 0.84 +1.0
540,494 - OKGIIK_02320 0.84 -2.6
540,494 - OKGIIK_02320 0.84 -1.8
540,494 - OKGIIK_02320 0.84 -0.1
540,494 - OKGIIK_02320 0.84 -1.9
540,494 - OKGIIK_02320 0.84 -1.0
540,494 - OKGIIK_02320 0.84 +1.2
540,494 - OKGIIK_02320 0.84 -1.8
540,494 - OKGIIK_02320 0.84 -0.6
540,494 - OKGIIK_02320 0.84 -2.2
540,494 - OKGIIK_02320 0.84 -0.6
540,494 - OKGIIK_02320 0.84 +0.4
540,494 - OKGIIK_02320 0.84 +2.0
540,494 - OKGIIK_02320 0.84 -0.8
540,737 + -3.3
540,737 + -0.0
540,737 + -0.0
540,737 + -2.2
540,737 + -1.3
540,737 + -1.3
540,737 + +1.0
540,737 + -0.7
540,737 + -1.0
540,806 + -1.8
540,866 + OKGIIK_02325 0.13 +1.0
540,866 + OKGIIK_02325 0.13 -2.5
541,253 + OKGIIK_02325 0.46 -1.6
541,253 + OKGIIK_02325 0.46 -2.0
541,253 + OKGIIK_02325 0.46 -0.8
541,253 + OKGIIK_02325 0.46 -1.3
541,253 + OKGIIK_02325 0.46 -1.3
541,253 + OKGIIK_02325 0.46 -0.7
541,331 + OKGIIK_02325 0.53 -0.4
541,331 + OKGIIK_02325 0.53 +0.7
541,412 + OKGIIK_02325 0.60 +0.7
541,412 + OKGIIK_02325 0.60 -1.0
541,412 + OKGIIK_02325 0.60 +1.0
541,412 + OKGIIK_02325 0.60 -3.5
541,412 + OKGIIK_02325 0.60 -0.6
541,412 + OKGIIK_02325 0.60 -1.2
541,412 + OKGIIK_02325 0.60 -1.8
541,412 + OKGIIK_02325 0.60 -1.3
541,412 + OKGIIK_02325 0.60 -2.5
541,412 + OKGIIK_02325 0.60 -0.0
541,412 + OKGIIK_02325 0.60 -0.4
541,493 + OKGIIK_02325 0.66 -0.3
541,613 + OKGIIK_02325 0.77 -1.0
541,613 + OKGIIK_02325 0.77 -0.6
541,613 + OKGIIK_02325 0.77 +1.0
541,613 + OKGIIK_02325 0.77 -0.4
541,613 + OKGIIK_02325 0.77 -1.8
541,613 + OKGIIK_02325 0.77 -1.3

Or see this region's nucleotide sequence