Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_00530

Experiment: R2A_PIPES with Nickel (II) chloride 424 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_00520 and OKGIIK_00525 are separated by 5 nucleotidesOKGIIK_00525 and OKGIIK_00530 overlap by 4 nucleotidesOKGIIK_00530 and OKGIIK_00535 overlap by 4 nucleotides OKGIIK_00520: OKGIIK_00520 - phage tail protein, at 118,337 to 118,864 _00520 OKGIIK_00525: OKGIIK_00525 - PEROXIDASE-4 domain-containing protein, at 118,870 to 119,607 _00525 OKGIIK_00530: OKGIIK_00530 - hypothetical protein, at 119,604 to 120,368 _00530 OKGIIK_00535: OKGIIK_00535 - Pvc16-N domain-containing protein, at 120,365 to 121,606 _00535 Position (kb) 119 120 121Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.668 kb on - strand, within OKGIIK_00520at 118.697 kb on + strand, within OKGIIK_00520at 118.727 kb on + strand, within OKGIIK_00520at 118.727 kb on + strand, within OKGIIK_00520at 118.728 kb on - strand, within OKGIIK_00520at 118.728 kb on - strand, within OKGIIK_00520at 118.975 kb on + strand, within OKGIIK_00525at 118.975 kb on + strand, within OKGIIK_00525at 118.975 kb on + strand, within OKGIIK_00525at 118.975 kb on + strand, within OKGIIK_00525at 118.975 kb on + strand, within OKGIIK_00525at 118.975 kb on + strand, within OKGIIK_00525at 118.975 kb on + strand, within OKGIIK_00525at 118.976 kb on - strand, within OKGIIK_00525at 118.976 kb on - strand, within OKGIIK_00525at 118.976 kb on - strand, within OKGIIK_00525at 118.976 kb on - strand, within OKGIIK_00525at 119.333 kb on + strand, within OKGIIK_00525at 119.333 kb on + strand, within OKGIIK_00525at 119.334 kb on - strand, within OKGIIK_00525at 119.335 kb on - strand, within OKGIIK_00525at 119.338 kb on + strand, within OKGIIK_00525at 119.338 kb on + strand, within OKGIIK_00525at 119.339 kb on - strand, within OKGIIK_00525at 119.339 kb on - strand, within OKGIIK_00525at 119.339 kb on - strand, within OKGIIK_00525at 119.339 kb on - strand, within OKGIIK_00525at 119.339 kb on - strand, within OKGIIK_00525at 119.339 kb on - strand, within OKGIIK_00525at 119.339 kb on - strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.525 kb on - strand, within OKGIIK_00525at 119.525 kb on - strand, within OKGIIK_00525at 119.525 kb on - strand, within OKGIIK_00525at 119.525 kb on - strand, within OKGIIK_00525at 119.525 kb on - strand, within OKGIIK_00525at 119.525 kb on - strand, within OKGIIK_00525at 119.531 kb on - strand, within OKGIIK_00525at 119.531 kb on - strand, within OKGIIK_00525at 119.584 kb on + strandat 119.584 kb on + strandat 119.584 kb on + strandat 119.585 kb on - strandat 119.585 kb on - strandat 119.904 kb on - strand, within OKGIIK_00530at 119.911 kb on + strand, within OKGIIK_00530at 119.912 kb on - strand, within OKGIIK_00530at 119.912 kb on - strand, within OKGIIK_00530at 120.262 kb on + strand, within OKGIIK_00530at 120.262 kb on + strand, within OKGIIK_00530at 120.262 kb on + strand, within OKGIIK_00530at 120.262 kb on + strand, within OKGIIK_00530at 120.262 kb on + strand, within OKGIIK_00530at 120.262 kb on + strand, within OKGIIK_00530at 120.263 kb on - strand, within OKGIIK_00530at 120.263 kb on - strand, within OKGIIK_00530at 120.333 kb on + strandat 120.334 kb on - strandat 120.334 kb on - strandat 120.530 kb on + strand, within OKGIIK_00535at 120.531 kb on - strand, within OKGIIK_00535at 120.531 kb on - strand, within OKGIIK_00535at 120.531 kb on - strand, within OKGIIK_00535at 120.630 kb on - strand, within OKGIIK_00535at 120.860 kb on + strand, within OKGIIK_00535at 120.860 kb on + strand, within OKGIIK_00535at 120.860 kb on + strand, within OKGIIK_00535at 120.861 kb on - strand, within OKGIIK_00535at 120.861 kb on - strand, within OKGIIK_00535at 120.861 kb on - strand, within OKGIIK_00535at 120.861 kb on - strand, within OKGIIK_00535at 120.878 kb on + strand, within OKGIIK_00535at 120.879 kb on - strand, within OKGIIK_00535at 120.879 kb on - strand, within OKGIIK_00535at 120.879 kb on - strand, within OKGIIK_00535at 121.010 kb on + strand, within OKGIIK_00535at 121.011 kb on - strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.228 kb on + strand, within OKGIIK_00535at 121.229 kb on - strand, within OKGIIK_00535at 121.229 kb on - strand, within OKGIIK_00535at 121.229 kb on - strand, within OKGIIK_00535at 121.229 kb on - strand, within OKGIIK_00535

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 424 uM
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118,667 + OKGIIK_00520 0.62 -4.8
118,667 + OKGIIK_00520 0.62 -1.0
118,667 + OKGIIK_00520 0.62 -2.0
118,667 + OKGIIK_00520 0.62 -2.1
118,667 + OKGIIK_00520 0.62 -4.3
118,667 + OKGIIK_00520 0.62 -1.4
118,667 + OKGIIK_00520 0.62 +2.1
118,667 + OKGIIK_00520 0.62 -0.6
118,667 + OKGIIK_00520 0.62 -1.6
118,667 + OKGIIK_00520 0.62 +1.2
118,667 + OKGIIK_00520 0.62 +1.6
118,668 - OKGIIK_00520 0.63 -1.0
118,697 + OKGIIK_00520 0.68 -0.4
118,727 + OKGIIK_00520 0.74 -3.5
118,727 + OKGIIK_00520 0.74 +0.6
118,728 - OKGIIK_00520 0.74 -0.4
118,728 - OKGIIK_00520 0.74 -0.4
118,975 + OKGIIK_00525 0.14 -0.5
118,975 + OKGIIK_00525 0.14 +1.6
118,975 + OKGIIK_00525 0.14 -0.7
118,975 + OKGIIK_00525 0.14 -1.0
118,975 + OKGIIK_00525 0.14 +0.9
118,975 + OKGIIK_00525 0.14 +0.0
118,975 + OKGIIK_00525 0.14 -1.9
118,976 - OKGIIK_00525 0.14 +1.6
118,976 - OKGIIK_00525 0.14 -1.2
118,976 - OKGIIK_00525 0.14 -1.7
118,976 - OKGIIK_00525 0.14 -2.3
119,333 + OKGIIK_00525 0.63 -3.2
119,333 + OKGIIK_00525 0.63 -0.3
119,334 - OKGIIK_00525 0.63 -1.2
119,335 - OKGIIK_00525 0.63 +2.3
119,338 + OKGIIK_00525 0.63 +1.4
119,338 + OKGIIK_00525 0.63 -0.9
119,339 - OKGIIK_00525 0.64 +0.4
119,339 - OKGIIK_00525 0.64 -2.1
119,339 - OKGIIK_00525 0.64 -1.6
119,339 - OKGIIK_00525 0.64 -1.0
119,339 - OKGIIK_00525 0.64 +2.6
119,339 - OKGIIK_00525 0.64 +0.6
119,339 - OKGIIK_00525 0.64 -2.0
119,524 + OKGIIK_00525 0.89 +1.3
119,524 + OKGIIK_00525 0.89 -1.0
119,524 + OKGIIK_00525 0.89 -1.6
119,524 + OKGIIK_00525 0.89 -0.4
119,524 + OKGIIK_00525 0.89 -0.4
119,524 + OKGIIK_00525 0.89 +0.0
119,524 + OKGIIK_00525 0.89 +0.6
119,524 + OKGIIK_00525 0.89 -1.0
119,524 + OKGIIK_00525 0.89 -2.8
119,524 + OKGIIK_00525 0.89 -3.2
119,525 - OKGIIK_00525 0.89 -2.7
119,525 - OKGIIK_00525 0.89 -1.2
119,525 - OKGIIK_00525 0.89 -1.6
119,525 - OKGIIK_00525 0.89 +2.6
119,525 - OKGIIK_00525 0.89 -2.0
119,525 - OKGIIK_00525 0.89 -0.7
119,531 - OKGIIK_00525 0.90 -2.3
119,531 - OKGIIK_00525 0.90 +0.6
119,584 + -1.0
119,584 + -1.4
119,584 + -2.3
119,585 - -1.0
119,585 - -2.0
119,904 - OKGIIK_00530 0.39 -1.0
119,911 + OKGIIK_00530 0.40 -2.0
119,912 - OKGIIK_00530 0.40 -2.4
119,912 - OKGIIK_00530 0.40 -1.6
120,262 + OKGIIK_00530 0.86 +1.9
120,262 + OKGIIK_00530 0.86 -2.0
120,262 + OKGIIK_00530 0.86 +3.0
120,262 + OKGIIK_00530 0.86 -0.6
120,262 + OKGIIK_00530 0.86 +0.5
120,262 + OKGIIK_00530 0.86 -1.0
120,263 - OKGIIK_00530 0.86 +0.4
120,263 - OKGIIK_00530 0.86 -0.6
120,333 + -0.4
120,334 - -0.1
120,334 - -1.2
120,530 + OKGIIK_00535 0.13 -1.4
120,531 - OKGIIK_00535 0.13 -1.0
120,531 - OKGIIK_00535 0.13 -1.6
120,531 - OKGIIK_00535 0.13 +0.0
120,630 - OKGIIK_00535 0.21 +2.5
120,860 + OKGIIK_00535 0.40 -1.7
120,860 + OKGIIK_00535 0.40 -1.6
120,860 + OKGIIK_00535 0.40 +0.3
120,861 - OKGIIK_00535 0.40 -0.4
120,861 - OKGIIK_00535 0.40 +0.0
120,861 - OKGIIK_00535 0.40 -1.9
120,861 - OKGIIK_00535 0.40 -0.1
120,878 + OKGIIK_00535 0.41 -2.7
120,879 - OKGIIK_00535 0.41 -0.7
120,879 - OKGIIK_00535 0.41 -0.4
120,879 - OKGIIK_00535 0.41 -1.0
121,010 + OKGIIK_00535 0.52 -1.0
121,011 - OKGIIK_00535 0.52 -1.4
121,226 + OKGIIK_00535 0.69 -3.3
121,226 + OKGIIK_00535 0.69 +1.6
121,226 + OKGIIK_00535 0.69 +0.6
121,226 + OKGIIK_00535 0.69 -0.4
121,226 + OKGIIK_00535 0.69 -1.6
121,226 + OKGIIK_00535 0.69 -3.2
121,226 + OKGIIK_00535 0.69 -2.2
121,226 + OKGIIK_00535 0.69 +0.0
121,226 + OKGIIK_00535 0.69 -0.2
121,226 + OKGIIK_00535 0.69 -0.4
121,226 + OKGIIK_00535 0.69 -1.8
121,226 + OKGIIK_00535 0.69 -1.7
121,226 + OKGIIK_00535 0.69 +1.2
121,226 + OKGIIK_00535 0.69 -0.7
121,226 + OKGIIK_00535 0.69 +1.6
121,226 + OKGIIK_00535 0.69 -2.1
121,226 + OKGIIK_00535 0.69 -1.6
121,226 + OKGIIK_00535 0.69 -2.0
121,226 + OKGIIK_00535 0.69 -2.8
121,227 - OKGIIK_00535 0.69 -3.1
121,227 - OKGIIK_00535 0.69 -1.6
121,227 - OKGIIK_00535 0.69 -1.9
121,227 - OKGIIK_00535 0.69 -2.3
121,227 - OKGIIK_00535 0.69 -1.0
121,227 - OKGIIK_00535 0.69 +0.4
121,227 - OKGIIK_00535 0.69 -2.4
121,227 - OKGIIK_00535 0.69 -1.6
121,227 - OKGIIK_00535 0.69 +0.1
121,227 - OKGIIK_00535 0.69 -2.2
121,227 - OKGIIK_00535 0.69 -3.2
121,227 - OKGIIK_00535 0.69 +2.0
121,227 - OKGIIK_00535 0.69 -1.0
121,227 - OKGIIK_00535 0.69 -1.2
121,227 - OKGIIK_00535 0.69 +1.6
121,228 + OKGIIK_00535 0.69 -0.4
121,229 - OKGIIK_00535 0.70 +0.8
121,229 - OKGIIK_00535 0.70 +0.0
121,229 - OKGIIK_00535 0.70 +0.6
121,229 - OKGIIK_00535 0.70 -2.1

Or see this region's nucleotide sequence