Experiment: R2A_PIPES with Cadmium chloride 32 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfdV and OKGIIK_03685 are separated by 74 nucleotides OKGIIK_03685 and OKGIIK_03690 are separated by 36 nucleotides OKGIIK_03690 and OKGIIK_03695 are separated by 98 nucleotides OKGIIK_03695 and katE are separated by 9 nucleotides
OKGIIK_03680: yfdV - transporter, at 811,312 to 812,205
yfdV
OKGIIK_03685: OKGIIK_03685 - Histidine kinase, at 812,280 to 812,867
_03685
OKGIIK_03690: OKGIIK_03690 - RNA-binding protein, at 812,904 to 813,302
_03690
OKGIIK_03695: OKGIIK_03695 - Histidine kinase, at 813,401 to 814,063
_03695
OKGIIK_03700: katE - catalase, at 814,073 to 815,515
katE
Position (kb) 812
813
814 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 812.039 kb on + strand, within yfdV at 812.039 kb on + strand, within yfdV at 812.039 kb on + strand, within yfdV at 812.039 kb on + strand, within yfdV at 812.039 kb on + strand, within yfdV at 812.039 kb on + strand, within yfdV at 812.039 kb on + strand, within yfdV at 812.039 kb on + strand, within yfdV at 812.039 kb on + strand, within yfdV at 812.040 kb on - strand, within yfdV at 812.040 kb on - strand, within yfdV at 812.040 kb on - strand, within yfdV at 812.040 kb on - strand, within yfdV at 812.040 kb on - strand, within yfdV at 812.040 kb on - strand, within yfdV at 812.040 kb on - strand, within yfdV at 812.107 kb on + strand, within yfdV at 812.107 kb on + strand, within yfdV at 812.107 kb on + strand, within yfdV at 812.107 kb on + strand, within yfdV at 812.107 kb on + strand, within yfdV at 812.107 kb on + strand, within yfdV at 812.108 kb on - strand, within yfdV at 812.108 kb on - strand, within yfdV at 812.108 kb on - strand, within yfdV at 812.108 kb on - strand, within yfdV at 812.108 kb on - strand, within yfdV at 812.108 kb on - strand, within yfdV at 812.108 kb on - strand, within yfdV at 812.108 kb on - strand, within yfdV at 812.108 kb on - strand, within yfdV at 812.108 kb on - strand, within yfdV at 812.204 kb on - strand at 812.204 kb on - strand at 812.204 kb on - strand at 812.242 kb on + strand at 812.242 kb on + strand at 812.242 kb on + strand at 812.243 kb on - strand at 812.243 kb on - strand at 812.634 kb on + strand, within OKGIIK_03685 at 812.634 kb on + strand, within OKGIIK_03685 at 812.634 kb on + strand, within OKGIIK_03685 at 812.634 kb on + strand, within OKGIIK_03685 at 812.634 kb on + strand, within OKGIIK_03685 at 812.634 kb on + strand, within OKGIIK_03685 at 812.634 kb on + strand, within OKGIIK_03685 at 812.634 kb on + strand, within OKGIIK_03685 at 812.635 kb on - strand, within OKGIIK_03685 at 812.635 kb on - strand, within OKGIIK_03685 at 812.635 kb on - strand, within OKGIIK_03685 at 812.635 kb on - strand, within OKGIIK_03685 at 812.635 kb on - strand, within OKGIIK_03685 at 812.635 kb on - strand, within OKGIIK_03685 at 812.635 kb on - strand, within OKGIIK_03685 at 812.635 kb on - strand, within OKGIIK_03685 at 812.893 kb on + strand at 812.893 kb on + strand at 812.894 kb on - strand at 812.894 kb on - strand at 813.110 kb on - strand, within OKGIIK_03690 at 813.165 kb on + strand, within OKGIIK_03690 at 813.165 kb on + strand, within OKGIIK_03690 at 813.340 kb on + strand at 813.340 kb on + strand at 813.340 kb on + strand at 813.341 kb on - strand at 813.341 kb on - strand at 813.341 kb on - strand at 813.341 kb on - strand at 813.341 kb on - strand at 813.341 kb on - strand at 813.341 kb on - strand at 813.341 kb on - strand at 813.575 kb on + strand, within OKGIIK_03695 at 813.575 kb on + strand, within OKGIIK_03695 at 813.575 kb on + strand, within OKGIIK_03695 at 813.576 kb on - strand, within OKGIIK_03695 at 813.583 kb on - strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.773 kb on + strand, within OKGIIK_03695 at 813.774 kb on - strand, within OKGIIK_03695 at 813.774 kb on - strand, within OKGIIK_03695 at 813.774 kb on - strand, within OKGIIK_03695 at 813.774 kb on - strand, within OKGIIK_03695 at 813.774 kb on - strand, within OKGIIK_03695 at 813.774 kb on - strand, within OKGIIK_03695 at 813.774 kb on - strand, within OKGIIK_03695 at 813.774 kb on - strand, within OKGIIK_03695 at 813.774 kb on - strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.833 kb on + strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 813.834 kb on - strand, within OKGIIK_03695 at 814.113 kb on + strand at 814.114 kb on - strand at 814.114 kb on - strand at 814.114 kb on - strand at 814.193 kb on - strand at 814.193 kb on - strand at 814.257 kb on + strand, within katE at 814.258 kb on - strand, within katE at 814.284 kb on + strand, within katE
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 32 uM remove 812,039 + yfdV OKGIIK_03680 0.81 +0.0 812,039 + yfdV OKGIIK_03680 0.81 +0.5 812,039 + yfdV OKGIIK_03680 0.81 -1.5 812,039 + yfdV OKGIIK_03680 0.81 -0.9 812,039 + yfdV OKGIIK_03680 0.81 -0.1 812,039 + yfdV OKGIIK_03680 0.81 -1.9 812,039 + yfdV OKGIIK_03680 0.81 +1.1 812,039 + yfdV OKGIIK_03680 0.81 -1.1 812,039 + yfdV OKGIIK_03680 0.81 -0.9 812,040 - yfdV OKGIIK_03680 0.81 +0.3 812,040 - yfdV OKGIIK_03680 0.81 +0.9 812,040 - yfdV OKGIIK_03680 0.81 +0.6 812,040 - yfdV OKGIIK_03680 0.81 +0.5 812,040 - yfdV OKGIIK_03680 0.81 +1.5 812,040 - yfdV OKGIIK_03680 0.81 +0.5 812,040 - yfdV OKGIIK_03680 0.81 +0.5 812,107 + yfdV OKGIIK_03680 0.89 +1.5 812,107 + yfdV OKGIIK_03680 0.89 +0.5 812,107 + yfdV OKGIIK_03680 0.89 -1.1 812,107 + yfdV OKGIIK_03680 0.89 -0.4 812,107 + yfdV OKGIIK_03680 0.89 -0.5 812,107 + yfdV OKGIIK_03680 0.89 -2.2 812,108 - yfdV OKGIIK_03680 0.89 +0.1 812,108 - yfdV OKGIIK_03680 0.89 -0.1 812,108 - yfdV OKGIIK_03680 0.89 -0.5 812,108 - yfdV OKGIIK_03680 0.89 -0.9 812,108 - yfdV OKGIIK_03680 0.89 -0.5 812,108 - yfdV OKGIIK_03680 0.89 -0.7 812,108 - yfdV OKGIIK_03680 0.89 -0.9 812,108 - yfdV OKGIIK_03680 0.89 -1.8 812,108 - yfdV OKGIIK_03680 0.89 +0.5 812,108 - yfdV OKGIIK_03680 0.89 +0.1 812,204 - -0.8 812,204 - +0.9 812,204 - -0.9 812,242 + +1.5 812,242 + +3.8 812,242 + -0.6 812,243 - -1.0 812,243 - -1.1 812,634 + OKGIIK_03685 0.60 -3.1 812,634 + OKGIIK_03685 0.60 -0.5 812,634 + OKGIIK_03685 0.60 -0.8 812,634 + OKGIIK_03685 0.60 -0.0 812,634 + OKGIIK_03685 0.60 -1.0 812,634 + OKGIIK_03685 0.60 +1.2 812,634 + OKGIIK_03685 0.60 -0.7 812,634 + OKGIIK_03685 0.60 -1.7 812,635 - OKGIIK_03685 0.60 -1.1 812,635 - OKGIIK_03685 0.60 +2.5 812,635 - OKGIIK_03685 0.60 -0.5 812,635 - OKGIIK_03685 0.60 +1.1 812,635 - OKGIIK_03685 0.60 -0.1 812,635 - OKGIIK_03685 0.60 +0.5 812,635 - OKGIIK_03685 0.60 -1.4 812,635 - OKGIIK_03685 0.60 +2.0 812,893 + -0.9 812,893 + -1.7 812,894 - -1.1 812,894 - +1.5 813,110 - OKGIIK_03690 0.52 -1.1 813,165 + OKGIIK_03690 0.65 -1.2 813,165 + OKGIIK_03690 0.65 -1.4 813,340 + -1.5 813,340 + +0.7 813,340 + -2.1 813,341 - +1.5 813,341 - +0.5 813,341 - -1.2 813,341 - -2.5 813,341 - +1.5 813,341 - -1.9 813,341 - +0.1 813,341 - -1.8 813,575 + OKGIIK_03695 0.26 -0.1 813,575 + OKGIIK_03695 0.26 +0.5 813,575 + OKGIIK_03695 0.26 -1.5 813,576 - OKGIIK_03695 0.26 +0.3 813,583 - OKGIIK_03695 0.27 -1.1 813,773 + OKGIIK_03695 0.56 +1.5 813,773 + OKGIIK_03695 0.56 -0.7 813,773 + OKGIIK_03695 0.56 -0.1 813,773 + OKGIIK_03695 0.56 -1.4 813,773 + OKGIIK_03695 0.56 -1.1 813,773 + OKGIIK_03695 0.56 -0.0 813,773 + OKGIIK_03695 0.56 -0.9 813,773 + OKGIIK_03695 0.56 -1.0 813,773 + OKGIIK_03695 0.56 +2.5 813,773 + OKGIIK_03695 0.56 +0.7 813,773 + OKGIIK_03695 0.56 +0.0 813,773 + OKGIIK_03695 0.56 +1.5 813,773 + OKGIIK_03695 0.56 +1.5 813,773 + OKGIIK_03695 0.56 -2.9 813,774 - OKGIIK_03695 0.56 +0.5 813,774 - OKGIIK_03695 0.56 +1.0 813,774 - OKGIIK_03695 0.56 -1.4 813,774 - OKGIIK_03695 0.56 -1.5 813,774 - OKGIIK_03695 0.56 +1.5 813,774 - OKGIIK_03695 0.56 +0.7 813,774 - OKGIIK_03695 0.56 -2.0 813,774 - OKGIIK_03695 0.56 -0.9 813,774 - OKGIIK_03695 0.56 -1.2 813,833 + OKGIIK_03695 0.65 +0.9 813,833 + OKGIIK_03695 0.65 -1.4 813,833 + OKGIIK_03695 0.65 +1.5 813,833 + OKGIIK_03695 0.65 -1.9 813,833 + OKGIIK_03695 0.65 -1.1 813,833 + OKGIIK_03695 0.65 -2.4 813,833 + OKGIIK_03695 0.65 -1.7 813,833 + OKGIIK_03695 0.65 +1.2 813,833 + OKGIIK_03695 0.65 -1.1 813,833 + OKGIIK_03695 0.65 -0.5 813,833 + OKGIIK_03695 0.65 -0.1 813,833 + OKGIIK_03695 0.65 -0.7 813,833 + OKGIIK_03695 0.65 -1.2 813,833 + OKGIIK_03695 0.65 +1.5 813,833 + OKGIIK_03695 0.65 -2.4 813,833 + OKGIIK_03695 0.65 +0.5 813,833 + OKGIIK_03695 0.65 +0.4 813,833 + OKGIIK_03695 0.65 +0.5 813,833 + OKGIIK_03695 0.65 -0.5 813,833 + OKGIIK_03695 0.65 -1.8 813,833 + OKGIIK_03695 0.65 -0.9 813,833 + OKGIIK_03695 0.65 -1.5 813,833 + OKGIIK_03695 0.65 -1.0 813,834 - OKGIIK_03695 0.65 -2.5 813,834 - OKGIIK_03695 0.65 -1.1 813,834 - OKGIIK_03695 0.65 +2.0 813,834 - OKGIIK_03695 0.65 +0.5 813,834 - OKGIIK_03695 0.65 -0.7 813,834 - OKGIIK_03695 0.65 -1.1 813,834 - OKGIIK_03695 0.65 -0.4 813,834 - OKGIIK_03695 0.65 +2.9 813,834 - OKGIIK_03695 0.65 +0.5 813,834 - OKGIIK_03695 0.65 -1.4 813,834 - OKGIIK_03695 0.65 +3.5 813,834 - OKGIIK_03695 0.65 +1.0 813,834 - OKGIIK_03695 0.65 -0.4 813,834 - OKGIIK_03695 0.65 -2.0 814,113 + +0.6 814,114 - +1.5 814,114 - +1.5 814,114 - -1.1 814,193 - +2.6 814,193 - +0.5 814,257 + katE OKGIIK_03700 0.13 +0.9 814,258 - katE OKGIIK_03700 0.13 +1.3 814,284 + katE OKGIIK_03700 0.15 +2.0
Or see this region's nucleotide sequence