Strain Fitness in Pseudomonas sp. RS175 around PFR28_00594

Experiment: D-Glucose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00593 and PFR28_00594 are separated by 216 nucleotidesPFR28_00594 and PFR28_00595 are separated by 92 nucleotides PFR28_00593: PFR28_00593 - HTH-type transcriptional regulator GntR, at 632,835 to 633,866 _00593 PFR28_00594: PFR28_00594 - Gluconokinase, at 634,083 to 634,616 _00594 PFR28_00595: PFR28_00595 - High-affinity gluconate transporter, at 634,709 to 636,061 _00595 Position (kb) 634 635Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 633.205 kb on + strand, within PFR28_00593at 633.284 kb on - strand, within PFR28_00593at 633.397 kb on + strand, within PFR28_00593at 633.397 kb on + strand, within PFR28_00593at 633.397 kb on + strand, within PFR28_00593at 633.397 kb on + strand, within PFR28_00593at 633.397 kb on + strand, within PFR28_00593at 633.397 kb on + strand, within PFR28_00593at 633.397 kb on + strand, within PFR28_00593at 633.397 kb on + strand, within PFR28_00593at 633.397 kb on + strand, within PFR28_00593at 633.398 kb on - strand, within PFR28_00593at 633.398 kb on - strand, within PFR28_00593at 633.398 kb on - strand, within PFR28_00593at 633.398 kb on - strand, within PFR28_00593at 633.398 kb on - strand, within PFR28_00593at 633.398 kb on - strand, within PFR28_00593at 633.484 kb on + strand, within PFR28_00593at 633.485 kb on - strand, within PFR28_00593at 633.493 kb on + strand, within PFR28_00593at 633.493 kb on + strand, within PFR28_00593at 633.493 kb on + strand, within PFR28_00593at 633.493 kb on + strand, within PFR28_00593at 633.493 kb on + strand, within PFR28_00593at 633.493 kb on + strand, within PFR28_00593at 633.493 kb on + strand, within PFR28_00593at 633.493 kb on + strand, within PFR28_00593at 633.493 kb on + strand, within PFR28_00593at 633.494 kb on - strand, within PFR28_00593at 633.494 kb on - strand, within PFR28_00593at 633.494 kb on - strand, within PFR28_00593at 633.494 kb on - strand, within PFR28_00593at 633.494 kb on - strand, within PFR28_00593at 633.494 kb on - strand, within PFR28_00593at 633.494 kb on - strand, within PFR28_00593at 633.494 kb on - strand, within PFR28_00593at 633.494 kb on - strand, within PFR28_00593at 633.494 kb on - strand, within PFR28_00593at 633.494 kb on - strand, within PFR28_00593at 633.529 kb on + strand, within PFR28_00593at 633.535 kb on + strand, within PFR28_00593at 633.535 kb on + strand, within PFR28_00593at 633.535 kb on + strand, within PFR28_00593at 633.535 kb on + strand, within PFR28_00593at 633.535 kb on + strand, within PFR28_00593at 633.535 kb on + strand, within PFR28_00593at 633.535 kb on + strand, within PFR28_00593at 633.535 kb on + strand, within PFR28_00593at 633.535 kb on + strand, within PFR28_00593at 633.536 kb on - strand, within PFR28_00593at 633.536 kb on - strand, within PFR28_00593at 633.536 kb on - strand, within PFR28_00593at 633.536 kb on - strand, within PFR28_00593at 633.536 kb on - strand, within PFR28_00593at 633.536 kb on - strand, within PFR28_00593at 633.536 kb on - strand, within PFR28_00593at 633.536 kb on - strand, within PFR28_00593at 633.536 kb on - strand, within PFR28_00593at 633.536 kb on - strand, within PFR28_00593at 633.536 kb on - strand, within PFR28_00593at 633.536 kb on - strand, within PFR28_00593at 633.536 kb on - strand, within PFR28_00593at 633.633 kb on + strand, within PFR28_00593at 633.633 kb on + strand, within PFR28_00593at 633.633 kb on + strand, within PFR28_00593at 633.634 kb on - strand, within PFR28_00593at 633.691 kb on + strand, within PFR28_00593at 633.691 kb on + strand, within PFR28_00593at 633.691 kb on + strand, within PFR28_00593at 633.691 kb on + strand, within PFR28_00593at 633.691 kb on + strand, within PFR28_00593at 633.691 kb on + strand, within PFR28_00593at 633.691 kb on + strand, within PFR28_00593at 633.691 kb on + strand, within PFR28_00593at 633.691 kb on + strand, within PFR28_00593at 633.691 kb on + strand, within PFR28_00593at 633.691 kb on + strand, within PFR28_00593at 633.691 kb on + strand, within PFR28_00593at 633.691 kb on + strand, within PFR28_00593at 633.692 kb on - strand, within PFR28_00593at 633.692 kb on - strand, within PFR28_00593at 633.692 kb on - strand, within PFR28_00593at 633.692 kb on - strand, within PFR28_00593at 633.692 kb on - strand, within PFR28_00593at 633.692 kb on - strand, within PFR28_00593at 633.692 kb on - strand, within PFR28_00593at 633.692 kb on - strand, within PFR28_00593at 633.692 kb on - strand, within PFR28_00593at 633.692 kb on - strand, within PFR28_00593at 633.692 kb on - strand, within PFR28_00593at 633.818 kb on + strandat 633.839 kb on + strandat 633.839 kb on + strandat 633.839 kb on + strandat 633.839 kb on + strandat 633.839 kb on + strandat 633.839 kb on + strandat 633.839 kb on + strandat 633.840 kb on - strandat 633.840 kb on - strandat 633.840 kb on - strandat 633.840 kb on - strandat 633.845 kb on + strandat 633.899 kb on + strandat 633.900 kb on - strandat 633.905 kb on - strandat 633.905 kb on - strandat 633.992 kb on - strandat 634.042 kb on + strandat 634.042 kb on + strandat 634.042 kb on + strandat 634.042 kb on + strandat 634.042 kb on + strandat 634.042 kb on + strandat 634.042 kb on + strandat 634.042 kb on + strandat 634.042 kb on + strandat 634.043 kb on - strandat 634.043 kb on - strandat 634.043 kb on - strandat 634.080 kb on + strandat 634.080 kb on + strandat 634.080 kb on + strandat 634.080 kb on + strandat 634.080 kb on + strandat 634.080 kb on + strandat 634.080 kb on + strandat 634.080 kb on + strandat 634.080 kb on + strandat 634.081 kb on - strandat 634.081 kb on - strandat 634.396 kb on + strand, within PFR28_00594at 634.396 kb on + strand, within PFR28_00594at 634.397 kb on - strand, within PFR28_00594at 634.397 kb on - strand, within PFR28_00594at 634.397 kb on - strand, within PFR28_00594at 634.575 kb on + strandat 634.575 kb on + strandat 634.575 kb on + strandat 634.575 kb on + strandat 634.575 kb on + strandat 634.575 kb on + strandat 634.575 kb on + strandat 634.575 kb on + strandat 634.575 kb on + strandat 634.575 kb on + strandat 634.575 kb on + strandat 634.575 kb on + strandat 634.575 kb on + strandat 634.575 kb on + strandat 634.576 kb on - strandat 634.576 kb on - strandat 634.576 kb on - strandat 634.576 kb on - strandat 634.576 kb on - strandat 634.576 kb on - strandat 634.576 kb on - strandat 634.576 kb on - strandat 634.576 kb on - strandat 634.663 kb on - strandat 634.867 kb on + strand, within PFR28_00595at 634.867 kb on + strand, within PFR28_00595at 634.868 kb on - strand, within PFR28_00595at 634.937 kb on - strand, within PFR28_00595at 635.152 kb on + strand, within PFR28_00595at 635.193 kb on + strand, within PFR28_00595at 635.194 kb on - strand, within PFR28_00595at 635.194 kb on - strand, within PFR28_00595at 635.194 kb on - strand, within PFR28_00595at 635.275 kb on - strand, within PFR28_00595at 635.314 kb on + strand, within PFR28_00595at 635.314 kb on + strand, within PFR28_00595at 635.315 kb on - strand, within PFR28_00595at 635.440 kb on - strand, within PFR28_00595at 635.564 kb on + strand, within PFR28_00595at 635.565 kb on - strand, within PFR28_00595at 635.565 kb on - strand, within PFR28_00595at 635.565 kb on - strand, within PFR28_00595

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) 10 mM
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633,205 + PFR28_00593 0.36 -1.3
633,284 - PFR28_00593 0.44 +1.3
633,397 + PFR28_00593 0.54 -0.0
633,397 + PFR28_00593 0.54 +0.5
633,397 + PFR28_00593 0.54 +0.2
633,397 + PFR28_00593 0.54 -0.7
633,397 + PFR28_00593 0.54 +0.9
633,397 + PFR28_00593 0.54 +0.0
633,397 + PFR28_00593 0.54 -0.1
633,397 + PFR28_00593 0.54 +0.7
633,397 + PFR28_00593 0.54 -0.1
633,398 - PFR28_00593 0.55 +1.1
633,398 - PFR28_00593 0.55 +0.4
633,398 - PFR28_00593 0.55 +0.2
633,398 - PFR28_00593 0.55 +0.9
633,398 - PFR28_00593 0.55 -0.3
633,398 - PFR28_00593 0.55 +2.4
633,484 + PFR28_00593 0.63 +0.3
633,485 - PFR28_00593 0.63 +0.4
633,493 + PFR28_00593 0.64 -1.0
633,493 + PFR28_00593 0.64 -0.1
633,493 + PFR28_00593 0.64 -0.9
633,493 + PFR28_00593 0.64 +0.6
633,493 + PFR28_00593 0.64 +0.2
633,493 + PFR28_00593 0.64 +0.2
633,493 + PFR28_00593 0.64 +0.7
633,493 + PFR28_00593 0.64 -1.2
633,493 + PFR28_00593 0.64 +1.0
633,494 - PFR28_00593 0.64 +0.0
633,494 - PFR28_00593 0.64 +1.0
633,494 - PFR28_00593 0.64 +0.0
633,494 - PFR28_00593 0.64 +0.1
633,494 - PFR28_00593 0.64 +0.7
633,494 - PFR28_00593 0.64 +1.3
633,494 - PFR28_00593 0.64 -0.1
633,494 - PFR28_00593 0.64 -0.5
633,494 - PFR28_00593 0.64 +0.1
633,494 - PFR28_00593 0.64 +0.4
633,494 - PFR28_00593 0.64 +1.6
633,529 + PFR28_00593 0.67 +0.4
633,535 + PFR28_00593 0.68 +0.3
633,535 + PFR28_00593 0.68 +0.2
633,535 + PFR28_00593 0.68 -0.1
633,535 + PFR28_00593 0.68 +1.5
633,535 + PFR28_00593 0.68 +1.1
633,535 + PFR28_00593 0.68 +0.7
633,535 + PFR28_00593 0.68 -0.4
633,535 + PFR28_00593 0.68 +0.5
633,535 + PFR28_00593 0.68 +0.5
633,536 - PFR28_00593 0.68 +0.7
633,536 - PFR28_00593 0.68 +0.4
633,536 - PFR28_00593 0.68 -0.0
633,536 - PFR28_00593 0.68 +1.2
633,536 - PFR28_00593 0.68 +0.3
633,536 - PFR28_00593 0.68 +0.4
633,536 - PFR28_00593 0.68 +0.6
633,536 - PFR28_00593 0.68 +0.4
633,536 - PFR28_00593 0.68 +0.2
633,536 - PFR28_00593 0.68 +0.9
633,536 - PFR28_00593 0.68 -0.1
633,536 - PFR28_00593 0.68 +0.0
633,536 - PFR28_00593 0.68 -0.1
633,633 + PFR28_00593 0.77 -0.1
633,633 + PFR28_00593 0.77 -0.2
633,633 + PFR28_00593 0.77 +1.0
633,634 - PFR28_00593 0.77 +0.0
633,691 + PFR28_00593 0.83 +0.9
633,691 + PFR28_00593 0.83 +0.5
633,691 + PFR28_00593 0.83 +0.1
633,691 + PFR28_00593 0.83 +0.6
633,691 + PFR28_00593 0.83 +1.0
633,691 + PFR28_00593 0.83 -0.8
633,691 + PFR28_00593 0.83 +0.7
633,691 + PFR28_00593 0.83 +0.3
633,691 + PFR28_00593 0.83 +0.5
633,691 + PFR28_00593 0.83 +0.5
633,691 + PFR28_00593 0.83 +0.2
633,691 + PFR28_00593 0.83 -0.3
633,691 + PFR28_00593 0.83 +0.5
633,692 - PFR28_00593 0.83 +0.2
633,692 - PFR28_00593 0.83 +0.4
633,692 - PFR28_00593 0.83 +0.9
633,692 - PFR28_00593 0.83 -1.2
633,692 - PFR28_00593 0.83 +0.6
633,692 - PFR28_00593 0.83 +0.1
633,692 - PFR28_00593 0.83 +0.2
633,692 - PFR28_00593 0.83 +0.7
633,692 - PFR28_00593 0.83 -0.3
633,692 - PFR28_00593 0.83 +1.2
633,692 - PFR28_00593 0.83 -0.3
633,818 + +0.6
633,839 + +0.4
633,839 + +0.0
633,839 + +0.4
633,839 + +0.5
633,839 + +1.2
633,839 + +0.2
633,839 + +0.3
633,840 - +1.2
633,840 - +0.3
633,840 - -0.2
633,840 - -0.1
633,845 + -0.6
633,899 + +0.6
633,900 - -0.7
633,905 - -1.5
633,905 - -0.0
633,992 - -2.0
634,042 + -0.4
634,042 + -0.4
634,042 + +2.0
634,042 + -0.9
634,042 + -0.3
634,042 + -0.2
634,042 + -0.3
634,042 + -0.7
634,042 + -0.6
634,043 - -2.3
634,043 - -1.0
634,043 - -2.6
634,080 + -1.3
634,080 + -2.1
634,080 + -2.4
634,080 + -1.1
634,080 + -2.1
634,080 + -2.2
634,080 + -1.2
634,080 + -2.1
634,080 + -1.6
634,081 - -2.1
634,081 - -1.2
634,396 + PFR28_00594 0.59 -3.4
634,396 + PFR28_00594 0.59 -1.7
634,397 - PFR28_00594 0.59 -0.8
634,397 - PFR28_00594 0.59 -2.2
634,397 - PFR28_00594 0.59 -1.5
634,575 + -2.8
634,575 + -2.0
634,575 + -0.7
634,575 + -1.4
634,575 + -4.7
634,575 + +0.2
634,575 + +0.1
634,575 + -0.3
634,575 + -3.4
634,575 + -2.8
634,575 + -1.9
634,575 + -2.7
634,575 + +0.0
634,575 + -2.3
634,576 - -2.1
634,576 - -0.6
634,576 - -1.3
634,576 - -2.1
634,576 - -1.6
634,576 - -1.6
634,576 - -2.2
634,576 - -2.2
634,576 - -3.8
634,663 - -1.7
634,867 + PFR28_00595 0.12 -2.1
634,867 + PFR28_00595 0.12 -2.9
634,868 - PFR28_00595 0.12 -2.5
634,937 - PFR28_00595 0.17 -2.3
635,152 + PFR28_00595 0.33 -2.4
635,193 + PFR28_00595 0.36 -3.1
635,194 - PFR28_00595 0.36 -0.4
635,194 - PFR28_00595 0.36 -2.2
635,194 - PFR28_00595 0.36 -3.6
635,275 - PFR28_00595 0.42 -2.4
635,314 + PFR28_00595 0.45 -1.6
635,314 + PFR28_00595 0.45 -1.5
635,315 - PFR28_00595 0.45 -0.6
635,440 - PFR28_00595 0.54 -1.5
635,564 + PFR28_00595 0.63 -1.9
635,565 - PFR28_00595 0.63 -1.9
635,565 - PFR28_00595 0.63 -2.2
635,565 - PFR28_00595 0.63 -1.6

Or see this region's nucleotide sequence