Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01625 and HMPREF1058_RS01620 are separated by 133 nucleotides HMPREF1058_RS01620 and HMPREF1058_RS01615 are separated by 20 nucleotides HMPREF1058_RS01615 and HMPREF1058_RS01610 are separated by 24 nucleotides HMPREF1058_RS01610 and HMPREF1058_RS01605 are separated by 88 nucleotides
HMPREF1058_RS01625: HMPREF1058_RS01625 - hypothetical protein, at 81,058 to 81,276
_RS01625
HMPREF1058_RS01620: HMPREF1058_RS01620 - tRNA-Lys, at 81,410 to 81,482
_RS01620
HMPREF1058_RS01615: HMPREF1058_RS01615 - tRNA-Lys, at 81,503 to 81,575
_RS01615
HMPREF1058_RS01610: HMPREF1058_RS01610 - tRNA-Lys, at 81,600 to 81,672
_RS01610
HMPREF1058_RS01605: HMPREF1058_RS01605 - MBL fold metallo-hydrolase, at 81,761 to 82,564
_RS01605
Position (kb) 81
82 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 80.601 kb on - strand at 80.636 kb on + strand at 80.637 kb on - strand at 80.639 kb on + strand at 80.640 kb on - strand at 80.687 kb on - strand at 80.746 kb on + strand at 80.747 kb on - strand at 80.826 kb on - strand at 80.869 kb on - strand at 80.939 kb on + strand at 80.983 kb on - strand at 81.026 kb on - strand at 81.082 kb on - strand, within HMPREF1058_RS01625 at 81.123 kb on - strand, within HMPREF1058_RS01625 at 81.147 kb on + strand, within HMPREF1058_RS01625 at 81.148 kb on - strand, within HMPREF1058_RS01625 at 81.153 kb on - strand, within HMPREF1058_RS01625 at 81.201 kb on + strand, within HMPREF1058_RS01625 at 81.274 kb on + strand at 81.275 kb on - strand at 81.279 kb on + strand at 81.375 kb on + strand at 81.462 kb on + strand, within HMPREF1058_RS01620 at 81.474 kb on + strand, within HMPREF1058_RS01620 at 81.475 kb on - strand at 81.540 kb on - strand, within HMPREF1058_RS01615 at 81.568 kb on - strand at 81.568 kb on - strand at 81.801 kb on - strand at 81.902 kb on - strand, within HMPREF1058_RS01605 at 81.979 kb on + strand, within HMPREF1058_RS01605 at 81.979 kb on + strand, within HMPREF1058_RS01605 at 81.979 kb on + strand, within HMPREF1058_RS01605 at 82.001 kb on - strand, within HMPREF1058_RS01605 at 82.084 kb on + strand, within HMPREF1058_RS01605 at 82.085 kb on - strand, within HMPREF1058_RS01605 at 82.088 kb on + strand, within HMPREF1058_RS01605 at 82.088 kb on + strand, within HMPREF1058_RS01605 at 82.088 kb on + strand, within HMPREF1058_RS01605 at 82.089 kb on - strand, within HMPREF1058_RS01605 at 82.090 kb on + strand, within HMPREF1058_RS01605 at 82.091 kb on - strand, within HMPREF1058_RS01605 at 82.092 kb on + strand, within HMPREF1058_RS01605 at 82.093 kb on - strand, within HMPREF1058_RS01605 at 82.093 kb on - strand, within HMPREF1058_RS01605 at 82.093 kb on - strand, within HMPREF1058_RS01605 at 82.157 kb on - strand, within HMPREF1058_RS01605 at 82.161 kb on - strand, within HMPREF1058_RS01605 at 82.260 kb on - strand, within HMPREF1058_RS01605 at 82.314 kb on - strand, within HMPREF1058_RS01605 at 82.460 kb on - strand, within HMPREF1058_RS01605 at 82.547 kb on + strand at 82.624 kb on + strand at 82.626 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 remove 80,601 - -0.3 80,636 + +0.4 80,637 - +0.5 80,639 + +1.5 80,640 - +0.0 80,687 - -0.3 80,746 + +0.2 80,747 - +2.6 80,826 - +0.3 80,869 - +0.2 80,939 + -1.6 80,983 - -0.2 81,026 - +1.5 81,082 - HMPREF1058_RS01625 0.11 +2.3 81,123 - HMPREF1058_RS01625 0.30 -1.1 81,147 + HMPREF1058_RS01625 0.41 +3.0 81,148 - HMPREF1058_RS01625 0.41 +3.0 81,153 - HMPREF1058_RS01625 0.43 -1.9 81,201 + HMPREF1058_RS01625 0.65 -0.0 81,274 + +0.9 81,275 - -0.7 81,279 + +0.6 81,375 + +0.0 81,462 + HMPREF1058_RS01620 0.71 +0.0 81,474 + HMPREF1058_RS01620 0.88 +0.3 81,475 - +0.8 81,540 - HMPREF1058_RS01615 0.51 +1.8 81,568 - +1.5 81,568 - +0.5 81,801 - +1.0 81,902 - HMPREF1058_RS01605 0.18 +0.5 81,979 + HMPREF1058_RS01605 0.27 -0.3 81,979 + HMPREF1058_RS01605 0.27 -1.2 81,979 + HMPREF1058_RS01605 0.27 +0.4 82,001 - HMPREF1058_RS01605 0.30 +0.9 82,084 + HMPREF1058_RS01605 0.40 -1.9 82,085 - HMPREF1058_RS01605 0.40 -0.6 82,088 + HMPREF1058_RS01605 0.41 -1.0 82,088 + HMPREF1058_RS01605 0.41 -1.4 82,088 + HMPREF1058_RS01605 0.41 -0.3 82,089 - HMPREF1058_RS01605 0.41 +1.0 82,090 + HMPREF1058_RS01605 0.41 +2.3 82,091 - HMPREF1058_RS01605 0.41 -0.1 82,092 + HMPREF1058_RS01605 0.41 +0.4 82,093 - HMPREF1058_RS01605 0.41 -0.9 82,093 - HMPREF1058_RS01605 0.41 +1.8 82,093 - HMPREF1058_RS01605 0.41 -0.2 82,157 - HMPREF1058_RS01605 0.49 +0.7 82,161 - HMPREF1058_RS01605 0.50 +0.2 82,260 - HMPREF1058_RS01605 0.62 +0.7 82,314 - HMPREF1058_RS01605 0.69 +0.5 82,460 - HMPREF1058_RS01605 0.87 -1.5 82,547 + +1.7 82,624 + +0.7 82,626 + -0.1
Or see this region's nucleotide sequence