Strain Fitness in Escherichia coli ECRC98 around JDDGAC_06695

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_06680 and ssb are separated by 10 nucleotidesssb and JDDGAC_06690 overlap by 4 nucleotidesJDDGAC_06690 and JDDGAC_06695 are separated by 200 nucleotidesJDDGAC_06695 and JDDGAC_06700 overlap by 4 nucleotidesJDDGAC_06700 and JDDGAC_06705 are separated by 5 nucleotidesJDDGAC_06705 and JDDGAC_06710 overlap by 8 nucleotidesJDDGAC_06710 and JDDGAC_06715 overlap by 11 nucleotides JDDGAC_06680: JDDGAC_06680 - PerC family transcriptional regulator, at 1,163,647 to 1,163,919 _06680 JDDGAC_06685: ssb - single-stranded DNA-binding protein, at 1,163,930 to 1,164,340 ssb JDDGAC_06690: JDDGAC_06690 - hypothetical protein, at 1,164,337 to 1,164,588 _06690 JDDGAC_06695: JDDGAC_06695 - DNA primase, at 1,164,789 to 1,166,189 _06695 JDDGAC_06700: JDDGAC_06700 - DUF4222 domain-containing protein, at 1,166,186 to 1,166,485 _06700 JDDGAC_06705: JDDGAC_06705 - hypothetical protein, at 1,166,491 to 1,166,724 _06705 JDDGAC_06710: JDDGAC_06710 - Putative prophage protein, at 1,166,717 to 1,167,181 _06710 JDDGAC_06715: JDDGAC_06715 - hypothetical protein, at 1,167,171 to 1,167,383 _06715 Position (kb) 1164 1165 1166 1167Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1163.915 kb on - strandat 1164.045 kb on - strand, within ssbat 1164.045 kb on - strand, within ssbat 1164.155 kb on - strand, within ssbat 1164.155 kb on - strand, within ssbat 1164.155 kb on - strand, within ssbat 1164.452 kb on - strand, within JDDGAC_06690at 1164.477 kb on - strand, within JDDGAC_06690at 1164.500 kb on - strand, within JDDGAC_06690at 1164.520 kb on + strand, within JDDGAC_06690at 1164.521 kb on - strand, within JDDGAC_06690at 1164.521 kb on - strand, within JDDGAC_06690at 1164.713 kb on + strandat 1164.802 kb on - strandat 1165.057 kb on - strand, within JDDGAC_06695at 1165.399 kb on - strand, within JDDGAC_06695at 1165.496 kb on - strand, within JDDGAC_06695at 1165.557 kb on + strand, within JDDGAC_06695at 1165.579 kb on + strand, within JDDGAC_06695at 1165.580 kb on - strand, within JDDGAC_06695at 1165.580 kb on - strand, within JDDGAC_06695at 1165.667 kb on + strand, within JDDGAC_06695at 1165.688 kb on - strand, within JDDGAC_06695at 1165.689 kb on + strand, within JDDGAC_06695at 1165.689 kb on + strand, within JDDGAC_06695at 1165.698 kb on + strand, within JDDGAC_06695at 1165.889 kb on - strand, within JDDGAC_06695at 1165.902 kb on + strand, within JDDGAC_06695at 1165.903 kb on - strand, within JDDGAC_06695at 1165.903 kb on - strand, within JDDGAC_06695at 1165.970 kb on - strand, within JDDGAC_06695at 1166.286 kb on - strand, within JDDGAC_06700at 1166.341 kb on - strand, within JDDGAC_06700at 1166.711 kb on + strandat 1166.772 kb on + strand, within JDDGAC_06710at 1166.823 kb on + strand, within JDDGAC_06710at 1166.983 kb on + strand, within JDDGAC_06710at 1166.983 kb on + strand, within JDDGAC_06710at 1167.060 kb on + strand, within JDDGAC_06710at 1167.086 kb on - strand, within JDDGAC_06710

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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1,163,915 - -0.7
1,164,045 - ssb JDDGAC_06685 0.28 +1.0
1,164,045 - ssb JDDGAC_06685 0.28 -0.2
1,164,155 - ssb JDDGAC_06685 0.55 +1.2
1,164,155 - ssb JDDGAC_06685 0.55 +0.6
1,164,155 - ssb JDDGAC_06685 0.55 -1.2
1,164,452 - JDDGAC_06690 0.46 +0.1
1,164,477 - JDDGAC_06690 0.56 -1.5
1,164,500 - JDDGAC_06690 0.65 -1.7
1,164,520 + JDDGAC_06690 0.73 +0.8
1,164,521 - JDDGAC_06690 0.73 -0.0
1,164,521 - JDDGAC_06690 0.73 -1.3
1,164,713 + -0.5
1,164,802 - -1.0
1,165,057 - JDDGAC_06695 0.19 -1.9
1,165,399 - JDDGAC_06695 0.44 -0.6
1,165,496 - JDDGAC_06695 0.50 -2.3
1,165,557 + JDDGAC_06695 0.55 +1.0
1,165,579 + JDDGAC_06695 0.56 +0.9
1,165,580 - JDDGAC_06695 0.56 -2.1
1,165,580 - JDDGAC_06695 0.56 -2.5
1,165,667 + JDDGAC_06695 0.63 -1.2
1,165,688 - JDDGAC_06695 0.64 +0.5
1,165,689 + JDDGAC_06695 0.64 -0.0
1,165,689 + JDDGAC_06695 0.64 +0.0
1,165,698 + JDDGAC_06695 0.65 -2.1
1,165,889 - JDDGAC_06695 0.79 -0.9
1,165,902 + JDDGAC_06695 0.79 -1.7
1,165,903 - JDDGAC_06695 0.80 -1.2
1,165,903 - JDDGAC_06695 0.80 -0.7
1,165,970 - JDDGAC_06695 0.84 -2.2
1,166,286 - JDDGAC_06700 0.33 -1.6
1,166,341 - JDDGAC_06700 0.52 -0.8
1,166,711 + +0.2
1,166,772 + JDDGAC_06710 0.12 +0.3
1,166,823 + JDDGAC_06710 0.23 -0.3
1,166,983 + JDDGAC_06710 0.57 +0.1
1,166,983 + JDDGAC_06710 0.57 -1.9
1,167,060 + JDDGAC_06710 0.74 +3.0
1,167,086 - JDDGAC_06710 0.79 +2.0

Or see this region's nucleotide sequence