Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt repA and MCAODC_15370 are separated by 407 nucleotides MCAODC_15370 and MCAODC_15375 overlap by 4 nucleotides MCAODC_15375 and MCAODC_15380 overlap by 4 nucleotides
MCAODC_15365: repA - RepFIB replication protein A, at 61,457 to 62,434
repA
MCAODC_15370: MCAODC_15370 - W0044, at 62,842 to 63,042
_15370
MCAODC_15375: MCAODC_15375 - hypothetical protein, at 63,039 to 63,659
_15375
MCAODC_15380: MCAODC_15380 - Plasmid replication region DNA-binding N-term, at 63,656 to 64,255
_15380
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 61.852 kb on + strand, within repA at 61.852 kb on + strand, within repA at 61.853 kb on - strand, within repA at 61.893 kb on + strand, within repA at 61.894 kb on - strand, within repA at 61.922 kb on + strand, within repA at 61.923 kb on - strand, within repA at 61.951 kb on - strand, within repA at 61.953 kb on + strand, within repA at 61.953 kb on + strand, within repA at 61.954 kb on - strand, within repA at 61.980 kb on + strand, within repA at 61.981 kb on - strand, within repA at 62.093 kb on + strand, within repA at 62.096 kb on - strand, within repA at 62.148 kb on - strand, within repA at 62.148 kb on - strand, within repA at 62.293 kb on + strand, within repA at 62.294 kb on - strand, within repA at 62.379 kb on - strand at 62.379 kb on - strand at 62.390 kb on - strand at 62.390 kb on - strand at 62.428 kb on + strand at 62.428 kb on + strand at 62.428 kb on + strand at 62.428 kb on + strand at 62.429 kb on - strand at 62.429 kb on - strand at 62.508 kb on - strand at 62.566 kb on + strand at 62.566 kb on + strand at 62.567 kb on - strand at 62.570 kb on + strand at 62.571 kb on - strand at 62.597 kb on + strand at 62.597 kb on + strand at 62.602 kb on + strand at 62.615 kb on + strand at 62.615 kb on + strand at 62.615 kb on + strand at 62.615 kb on + strand at 62.615 kb on + strand at 62.615 kb on + strand at 62.615 kb on + strand at 62.615 kb on + strand at 62.616 kb on - strand at 62.616 kb on - strand at 62.616 kb on - strand at 62.616 kb on - strand at 62.623 kb on + strand at 62.624 kb on - strand at 62.626 kb on - strand at 62.646 kb on + strand at 62.661 kb on - strand at 62.688 kb on + strand at 62.800 kb on + strand at 62.800 kb on + strand at 62.808 kb on + strand at 62.808 kb on + strand at 62.808 kb on + strand at 62.831 kb on + strand at 62.832 kb on - strand at 62.832 kb on - strand at 62.843 kb on + strand at 62.843 kb on + strand at 62.843 kb on + strand at 62.843 kb on + strand at 62.843 kb on + strand at 62.844 kb on - strand at 62.844 kb on - strand at 62.844 kb on - strand at 62.845 kb on + strand at 62.845 kb on + strand at 62.845 kb on + strand at 62.846 kb on - strand at 62.846 kb on - strand at 62.846 kb on - strand at 62.846 kb on - strand at 62.900 kb on + strand, within MCAODC_15370 at 62.946 kb on + strand, within MCAODC_15370 at 62.946 kb on + strand, within MCAODC_15370 at 62.946 kb on + strand, within MCAODC_15370 at 62.947 kb on - strand, within MCAODC_15370 at 62.947 kb on - strand, within MCAODC_15370 at 63.026 kb on + strand at 63.026 kb on + strand at 63.026 kb on + strand at 63.026 kb on + strand at 63.027 kb on - strand at 63.027 kb on - strand at 63.027 kb on - strand at 63.027 kb on - strand at 63.032 kb on + strand at 63.032 kb on + strand at 63.032 kb on + strand at 63.033 kb on - strand at 63.116 kb on + strand, within MCAODC_15375 at 63.116 kb on + strand, within MCAODC_15375 at 63.117 kb on - strand, within MCAODC_15375 at 63.117 kb on - strand, within MCAODC_15375 at 63.117 kb on - strand, within MCAODC_15375 at 63.117 kb on - strand, within MCAODC_15375 at 63.117 kb on - strand, within MCAODC_15375 at 63.197 kb on + strand, within MCAODC_15375 at 63.214 kb on + strand, within MCAODC_15375 at 63.214 kb on + strand, within MCAODC_15375 at 63.214 kb on + strand, within MCAODC_15375 at 63.215 kb on - strand, within MCAODC_15375 at 63.215 kb on - strand, within MCAODC_15375 at 63.215 kb on - strand, within MCAODC_15375 at 63.278 kb on + strand, within MCAODC_15375 at 63.278 kb on + strand, within MCAODC_15375 at 63.278 kb on + strand, within MCAODC_15375 at 63.278 kb on + strand, within MCAODC_15375 at 63.279 kb on - strand, within MCAODC_15375 at 63.279 kb on - strand, within MCAODC_15375 at 63.282 kb on - strand, within MCAODC_15375 at 63.334 kb on + strand, within MCAODC_15375 at 63.334 kb on + strand, within MCAODC_15375 at 63.334 kb on + strand, within MCAODC_15375 at 63.335 kb on - strand, within MCAODC_15375 at 63.335 kb on - strand, within MCAODC_15375 at 63.335 kb on - strand, within MCAODC_15375 at 63.376 kb on + strand, within MCAODC_15375 at 63.376 kb on + strand, within MCAODC_15375 at 63.376 kb on + strand, within MCAODC_15375 at 63.377 kb on - strand, within MCAODC_15375 at 63.377 kb on - strand, within MCAODC_15375 at 63.377 kb on - strand, within MCAODC_15375 at 63.377 kb on - strand, within MCAODC_15375 at 63.393 kb on + strand, within MCAODC_15375 at 63.394 kb on - strand, within MCAODC_15375 at 63.456 kb on - strand, within MCAODC_15375 at 63.496 kb on + strand, within MCAODC_15375 at 63.499 kb on + strand, within MCAODC_15375 at 63.500 kb on - strand, within MCAODC_15375 at 63.509 kb on + strand, within MCAODC_15375 at 63.510 kb on - strand, within MCAODC_15375 at 63.510 kb on - strand, within MCAODC_15375 at 63.634 kb on - strand at 63.634 kb on - strand at 63.635 kb on + strand at 63.635 kb on + strand at 63.635 kb on + strand at 63.635 kb on + strand at 63.635 kb on + strand at 63.635 kb on + strand at 63.635 kb on + strand at 63.635 kb on + strand at 63.635 kb on + strand at 63.636 kb on - strand at 63.636 kb on - strand at 63.636 kb on - strand at 63.636 kb on - strand at 63.636 kb on - strand at 63.636 kb on - strand at 63.636 kb on - strand at 63.636 kb on - strand at 63.639 kb on + strand at 63.639 kb on + strand at 63.639 kb on + strand at 63.640 kb on - strand at 63.640 kb on - strand at 63.640 kb on - strand at 63.640 kb on - strand at 63.640 kb on - strand at 63.640 kb on - strand at 63.640 kb on - strand at 63.640 kb on - strand at 63.642 kb on + strand at 63.642 kb on + strand at 63.642 kb on + strand at 63.642 kb on + strand at 63.642 kb on + strand at 63.643 kb on - strand at 63.643 kb on - strand at 63.643 kb on - strand at 63.643 kb on - strand at 63.643 kb on - strand at 63.833 kb on + strand, within MCAODC_15380
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 61,852 + repA MCAODC_15365 0.40 +0.3 61,852 + repA MCAODC_15365 0.40 +0.3 61,853 - repA MCAODC_15365 0.40 +0.8 61,893 + repA MCAODC_15365 0.45 +0.4 61,894 - repA MCAODC_15365 0.45 +1.7 61,922 + repA MCAODC_15365 0.48 -2.0 61,923 - repA MCAODC_15365 0.48 -1.4 61,951 - repA MCAODC_15365 0.51 +0.5 61,953 + repA MCAODC_15365 0.51 +1.9 61,953 + repA MCAODC_15365 0.51 +0.6 61,954 - repA MCAODC_15365 0.51 +1.1 61,980 + repA MCAODC_15365 0.53 -1.1 61,981 - repA MCAODC_15365 0.54 -0.4 62,093 + repA MCAODC_15365 0.65 -1.2 62,096 - repA MCAODC_15365 0.65 -0.6 62,148 - repA MCAODC_15365 0.71 -0.6 62,148 - repA MCAODC_15365 0.71 -0.6 62,293 + repA MCAODC_15365 0.85 +0.7 62,294 - repA MCAODC_15365 0.86 -1.7 62,379 - +1.4 62,379 - +0.4 62,390 - +1.2 62,390 - -0.5 62,428 + +1.4 62,428 + +0.2 62,428 + +4.5 62,428 + -2.4 62,429 - +0.1 62,429 - -1.9 62,508 - -1.1 62,566 + +1.5 62,566 + +0.1 62,567 - -0.4 62,570 + -0.4 62,571 - +0.4 62,597 + +1.6 62,597 + -0.8 62,602 + -0.9 62,615 + +4.5 62,615 + +0.3 62,615 + -0.6 62,615 + -0.2 62,615 + +1.3 62,615 + +0.5 62,615 + +0.2 62,615 + -1.3 62,616 - -1.8 62,616 - +1.5 62,616 - -0.1 62,616 - -1.6 62,623 + -0.2 62,624 - -0.6 62,626 - +1.9 62,646 + -1.9 62,661 - -0.4 62,688 + +1.9 62,800 + -0.7 62,800 + +0.3 62,808 + +1.1 62,808 + +0.3 62,808 + -1.2 62,831 + -1.3 62,832 - +0.2 62,832 - +0.9 62,843 + +1.1 62,843 + +0.3 62,843 + +0.2 62,843 + -0.0 62,843 + -0.0 62,844 - +1.3 62,844 - -0.2 62,844 - +1.8 62,845 + +0.4 62,845 + +0.5 62,845 + -0.0 62,846 - -0.6 62,846 - +0.9 62,846 - +1.4 62,846 - +0.6 62,900 + MCAODC_15370 0.29 -0.3 62,946 + MCAODC_15370 0.52 +2.1 62,946 + MCAODC_15370 0.52 -0.3 62,946 + MCAODC_15370 0.52 +0.1 62,947 - MCAODC_15370 0.52 -1.8 62,947 - MCAODC_15370 0.52 -0.7 63,026 + -1.2 63,026 + -0.7 63,026 + +0.9 63,026 + +1.9 63,027 - -0.9 63,027 - +2.2 63,027 - -1.1 63,027 - +3.5 63,032 + +3.0 63,032 + -0.7 63,032 + +2.5 63,033 - -0.9 63,116 + MCAODC_15375 0.12 +0.9 63,116 + MCAODC_15375 0.12 -2.0 63,117 - MCAODC_15375 0.13 +0.1 63,117 - MCAODC_15375 0.13 +1.0 63,117 - MCAODC_15375 0.13 +0.3 63,117 - MCAODC_15375 0.13 +1.1 63,117 - MCAODC_15375 0.13 +2.5 63,197 + MCAODC_15375 0.25 -1.1 63,214 + MCAODC_15375 0.28 +0.7 63,214 + MCAODC_15375 0.28 -0.5 63,214 + MCAODC_15375 0.28 -0.3 63,215 - MCAODC_15375 0.28 +0.5 63,215 - MCAODC_15375 0.28 +0.1 63,215 - MCAODC_15375 0.28 -0.2 63,278 + MCAODC_15375 0.38 -2.2 63,278 + MCAODC_15375 0.38 -1.2 63,278 + MCAODC_15375 0.38 +2.5 63,278 + MCAODC_15375 0.38 -0.5 63,279 - MCAODC_15375 0.39 +0.2 63,279 - MCAODC_15375 0.39 +0.7 63,282 - MCAODC_15375 0.39 -1.4 63,334 + MCAODC_15375 0.48 -0.7 63,334 + MCAODC_15375 0.48 +1.9 63,334 + MCAODC_15375 0.48 -0.6 63,335 - MCAODC_15375 0.48 +1.2 63,335 - MCAODC_15375 0.48 +1.9 63,335 - MCAODC_15375 0.48 +1.9 63,376 + MCAODC_15375 0.54 +1.9 63,376 + MCAODC_15375 0.54 +1.6 63,376 + MCAODC_15375 0.54 -0.1 63,377 - MCAODC_15375 0.54 -1.4 63,377 - MCAODC_15375 0.54 +0.1 63,377 - MCAODC_15375 0.54 -0.1 63,377 - MCAODC_15375 0.54 -1.1 63,393 + MCAODC_15375 0.57 -0.7 63,394 - MCAODC_15375 0.57 +1.7 63,456 - MCAODC_15375 0.67 +0.1 63,496 + MCAODC_15375 0.74 +0.6 63,499 + MCAODC_15375 0.74 +1.5 63,500 - MCAODC_15375 0.74 -0.9 63,509 + MCAODC_15375 0.76 +0.1 63,510 - MCAODC_15375 0.76 -0.2 63,510 - MCAODC_15375 0.76 -1.6 63,634 - +2.0 63,634 - +1.1 63,635 + +1.2 63,635 + -1.0 63,635 + +1.0 63,635 + +1.7 63,635 + -0.2 63,635 + +2.3 63,635 + +0.9 63,635 + +2.9 63,635 + -0.7 63,636 - +0.5 63,636 - +0.7 63,636 - +0.9 63,636 - -0.5 63,636 - -0.4 63,636 - -0.4 63,636 - -0.6 63,636 - +0.9 63,639 + +0.1 63,639 + +0.2 63,639 + -2.1 63,640 - +1.3 63,640 - -0.9 63,640 - -0.3 63,640 - -0.9 63,640 - -0.1 63,640 - +0.7 63,640 - +0.5 63,640 - +3.9 63,642 + -0.1 63,642 + -1.3 63,642 + -2.0 63,642 + +0.1 63,642 + +0.7 63,643 - -1.3 63,643 - -0.9 63,643 - -1.1 63,643 - -0.3 63,643 - -0.2 63,833 + MCAODC_15380 0.29 +1.3
Or see this region's nucleotide sequence