Strain Fitness in Escherichia coli ECRC101 around MCAODC_23325

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeeP and MCAODC_23320 are separated by 327 nucleotidesMCAODC_23320 and MCAODC_23325 are separated by 213 nucleotidesMCAODC_23325 and MCAODC_23330 overlap by 4 nucleotidesMCAODC_23330 and MCAODC_23335 are separated by 53 nucleotidesMCAODC_23335 and MCAODC_23340 overlap by 119 nucleotides MCAODC_23315: yeeP - 50S ribosome-binding GTPase, at 1,396,701 to 1,397,573 yeeP MCAODC_23320: MCAODC_23320 - hypothetical protein, at 1,397,901 to 1,398,083 _23320 MCAODC_23325: MCAODC_23325 - IS66 transposase, at 1,398,297 to 1,398,386 _23325 MCAODC_23330: MCAODC_23330 - putative transposase of insertion sequence IS682, at 1,398,383 to 1,398,808 _23330 MCAODC_23335: MCAODC_23335 - Integrase catalytic domain-containing protein, at 1,398,862 to 1,399,110 _23335 MCAODC_23340: MCAODC_23340 - BfpM-like protein, at 1,398,992 to 1,399,492 _23340 Position (kb) 1398 1399Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1397.450 kb on + strand, within yeePat 1397.573 kb on + strandat 1397.573 kb on + strandat 1397.573 kb on + strandat 1397.573 kb on + strandat 1397.573 kb on + strandat 1397.573 kb on + strandat 1397.573 kb on + strandat 1397.573 kb on + strandat 1397.574 kb on - strandat 1397.574 kb on - strandat 1397.579 kb on + strandat 1397.579 kb on + strandat 1397.580 kb on - strandat 1397.580 kb on - strandat 1397.674 kb on - strandat 1397.690 kb on - strandat 1397.690 kb on - strandat 1397.690 kb on - strandat 1397.713 kb on - strandat 1397.906 kb on + strandat 1397.939 kb on - strand, within MCAODC_23320at 1398.303 kb on + strandat 1398.303 kb on + strandat 1398.304 kb on - strandat 1398.304 kb on - strandat 1398.326 kb on + strand, within MCAODC_23325at 1398.566 kb on + strand, within MCAODC_23330at 1398.578 kb on + strand, within MCAODC_23330at 1398.578 kb on + strand, within MCAODC_23330at 1398.630 kb on - strand, within MCAODC_23330at 1398.630 kb on - strand, within MCAODC_23330at 1398.801 kb on - strandat 1398.812 kb on + strandat 1398.812 kb on + strandat 1398.812 kb on + strandat 1398.812 kb on + strandat 1398.812 kb on + strandat 1398.813 kb on - strandat 1398.824 kb on + strandat 1398.826 kb on + strandat 1398.842 kb on - strandat 1398.872 kb on - strandat 1399.189 kb on + strand, within MCAODC_23340

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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1,397,450 + yeeP MCAODC_23315 0.86 +0.4
1,397,573 + -1.7
1,397,573 + -0.4
1,397,573 + -0.3
1,397,573 + +3.1
1,397,573 + -1.2
1,397,573 + -1.4
1,397,573 + +2.7
1,397,573 + -1.2
1,397,574 - +0.6
1,397,574 - +1.4
1,397,579 + +2.3
1,397,579 + +0.0
1,397,580 - +1.4
1,397,580 - -0.2
1,397,674 - -1.9
1,397,690 - +1.4
1,397,690 - +0.3
1,397,690 - +1.1
1,397,713 - -2.1
1,397,906 + +1.6
1,397,939 - MCAODC_23320 0.21 -2.2
1,398,303 + +0.2
1,398,303 + +0.4
1,398,304 - -0.5
1,398,304 - +0.9
1,398,326 + MCAODC_23325 0.32 -0.9
1,398,566 + MCAODC_23330 0.43 -0.1
1,398,578 + MCAODC_23330 0.46 +1.2
1,398,578 + MCAODC_23330 0.46 -0.3
1,398,630 - MCAODC_23330 0.58 -1.1
1,398,630 - MCAODC_23330 0.58 -0.3
1,398,801 - +0.0
1,398,812 + -3.4
1,398,812 + -1.0
1,398,812 + -1.1
1,398,812 + +0.0
1,398,812 + +0.3
1,398,813 - +0.0
1,398,824 + -0.7
1,398,826 + +1.0
1,398,842 - +0.2
1,398,872 - +1.7
1,399,189 + MCAODC_23340 0.39 -1.2

Or see this region's nucleotide sequence