Strain Fitness in Escherichia coli ECRC101 around MCAODC_21255

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbtsS and MCAODC_21255 are separated by 221 nucleotidesMCAODC_21255 and MCAODC_21260 are separated by 224 nucleotidesMCAODC_21260 and MCAODC_21265 are separated by 367 nucleotides MCAODC_21250: btsS - two-component regulatory system sensor histidine kinase BtsS, at 1,052,506 to 1,054,191 btsS MCAODC_21255: MCAODC_21255 - IS4 family transposase, at 1,054,413 to 1,054,481 _21255 MCAODC_21260: MCAODC_21260 - DinI-like protein Z3916/ECs3483, at 1,054,706 to 1,054,954 _21260 MCAODC_21265: MCAODC_21265 - phage tail protein, at 1,055,322 to 1,055,591 _21265 Position (kb) 1054 1055Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1053.460 kb on - strand, within btsSat 1053.473 kb on + strand, within btsSat 1053.474 kb on - strand, within btsSat 1053.582 kb on - strand, within btsSat 1053.614 kb on - strand, within btsSat 1053.614 kb on - strand, within btsSat 1053.615 kb on + strand, within btsSat 1053.615 kb on + strand, within btsSat 1053.669 kb on + strand, within btsSat 1053.670 kb on - strand, within btsSat 1053.672 kb on + strand, within btsSat 1053.672 kb on + strand, within btsSat 1053.673 kb on - strand, within btsSat 1053.673 kb on - strand, within btsSat 1053.698 kb on + strand, within btsSat 1053.786 kb on + strand, within btsSat 1053.786 kb on + strand, within btsSat 1053.787 kb on - strand, within btsSat 1053.821 kb on - strand, within btsSat 1053.821 kb on - strand, within btsSat 1054.053 kb on - strandat 1054.117 kb on - strandat 1054.180 kb on - strandat 1054.188 kb on - strandat 1054.188 kb on - strandat 1054.228 kb on + strandat 1054.229 kb on - strandat 1054.229 kb on - strandat 1054.229 kb on - strandat 1054.285 kb on + strandat 1054.286 kb on - strandat 1054.382 kb on - strandat 1054.455 kb on - strand, within MCAODC_21255at 1054.458 kb on - strand, within MCAODC_21255at 1054.602 kb on + strandat 1054.602 kb on + strandat 1054.602 kb on + strandat 1054.602 kb on + strandat 1054.602 kb on + strandat 1054.602 kb on + strandat 1054.603 kb on - strandat 1054.603 kb on - strandat 1054.603 kb on - strandat 1054.683 kb on - strandat 1054.686 kb on + strandat 1054.705 kb on + strandat 1054.706 kb on - strandat 1054.706 kb on - strandat 1054.706 kb on - strandat 1054.706 kb on - strandat 1054.992 kb on + strandat 1054.992 kb on + strandat 1055.036 kb on + strandat 1055.036 kb on + strandat 1055.036 kb on + strandat 1055.037 kb on - strandat 1055.037 kb on - strandat 1055.037 kb on - strandat 1055.037 kb on - strandat 1055.037 kb on - strandat 1055.037 kb on - strandat 1055.037 kb on - strandat 1055.065 kb on - strandat 1055.072 kb on + strandat 1055.072 kb on + strandat 1055.119 kb on + strandat 1055.126 kb on + strandat 1055.204 kb on + strandat 1055.205 kb on - strandat 1055.205 kb on - strandat 1055.213 kb on - strandat 1055.234 kb on - strandat 1055.237 kb on + strandat 1055.237 kb on + strandat 1055.237 kb on + strandat 1055.237 kb on + strandat 1055.237 kb on + strandat 1055.237 kb on + strandat 1055.237 kb on + strandat 1055.237 kb on + strandat 1055.238 kb on - strandat 1055.238 kb on - strandat 1055.238 kb on - strandat 1055.238 kb on - strandat 1055.242 kb on + strandat 1055.242 kb on + strandat 1055.242 kb on + strandat 1055.242 kb on + strandat 1055.243 kb on - strandat 1055.243 kb on - strandat 1055.249 kb on + strandat 1055.249 kb on + strandat 1055.250 kb on - strandat 1055.250 kb on - strandat 1055.254 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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1,053,460 - btsS MCAODC_21250 0.57 -0.8
1,053,473 + btsS MCAODC_21250 0.57 +2.0
1,053,474 - btsS MCAODC_21250 0.57 -0.3
1,053,582 - btsS MCAODC_21250 0.64 -0.4
1,053,614 - btsS MCAODC_21250 0.66 -1.1
1,053,614 - btsS MCAODC_21250 0.66 -0.7
1,053,615 + btsS MCAODC_21250 0.66 +0.3
1,053,615 + btsS MCAODC_21250 0.66 +0.5
1,053,669 + btsS MCAODC_21250 0.69 +0.7
1,053,670 - btsS MCAODC_21250 0.69 -0.7
1,053,672 + btsS MCAODC_21250 0.69 -0.2
1,053,672 + btsS MCAODC_21250 0.69 +0.4
1,053,673 - btsS MCAODC_21250 0.69 -0.1
1,053,673 - btsS MCAODC_21250 0.69 -2.4
1,053,698 + btsS MCAODC_21250 0.71 -1.9
1,053,786 + btsS MCAODC_21250 0.76 -0.0
1,053,786 + btsS MCAODC_21250 0.76 +0.5
1,053,787 - btsS MCAODC_21250 0.76 +5.9
1,053,821 - btsS MCAODC_21250 0.78 -0.2
1,053,821 - btsS MCAODC_21250 0.78 +1.4
1,054,053 - -0.1
1,054,117 - +1.1
1,054,180 - +0.9
1,054,188 - -0.1
1,054,188 - -2.6
1,054,228 + -1.7
1,054,229 - -1.2
1,054,229 - +0.3
1,054,229 - +1.0
1,054,285 + +0.3
1,054,286 - -0.5
1,054,382 - +2.6
1,054,455 - MCAODC_21255 0.61 +0.5
1,054,458 - MCAODC_21255 0.65 +1.1
1,054,602 + +1.1
1,054,602 + -0.6
1,054,602 + +2.4
1,054,602 + +1.4
1,054,602 + +0.3
1,054,602 + +0.5
1,054,603 - -1.1
1,054,603 - -1.9
1,054,603 - -1.4
1,054,683 - +1.0
1,054,686 + +0.0
1,054,705 + +0.0
1,054,706 - -0.7
1,054,706 - -2.7
1,054,706 - +0.3
1,054,706 - +0.1
1,054,992 + -1.7
1,054,992 + -1.4
1,055,036 + +0.2
1,055,036 + +0.7
1,055,036 + +0.9
1,055,037 - -0.3
1,055,037 - -0.5
1,055,037 - +0.2
1,055,037 - +0.6
1,055,037 - -0.8
1,055,037 - +0.4
1,055,037 - -2.9
1,055,065 - +1.5
1,055,072 + +0.7
1,055,072 + -2.2
1,055,119 + -0.5
1,055,126 + -0.7
1,055,204 + -1.4
1,055,205 - +0.6
1,055,205 - +0.1
1,055,213 - -1.0
1,055,234 - +1.8
1,055,237 + +0.7
1,055,237 + +0.6
1,055,237 + +0.7
1,055,237 + -0.2
1,055,237 + -1.3
1,055,237 + -1.0
1,055,237 + +0.0
1,055,237 + -0.2
1,055,238 - +0.7
1,055,238 - +0.2
1,055,238 - +0.4
1,055,238 - +0.8
1,055,242 + -0.7
1,055,242 + +0.8
1,055,242 + +0.5
1,055,242 + +0.8
1,055,243 - -0.7
1,055,243 - -1.1
1,055,249 + -0.8
1,055,249 + +0.5
1,055,250 - +1.0
1,055,250 - -1.5
1,055,254 - -0.2

Or see this region's nucleotide sequence