Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt btsS and MCAODC_21255 are separated by 221 nucleotides MCAODC_21255 and MCAODC_21260 are separated by 224 nucleotides MCAODC_21260 and MCAODC_21265 are separated by 367 nucleotides
MCAODC_21250: btsS - two-component regulatory system sensor histidine kinase BtsS, at 1,052,506 to 1,054,191
btsS
MCAODC_21255: MCAODC_21255 - IS4 family transposase, at 1,054,413 to 1,054,481
_21255
MCAODC_21260: MCAODC_21260 - DinI-like protein Z3916/ECs3483, at 1,054,706 to 1,054,954
_21260
MCAODC_21265: MCAODC_21265 - phage tail protein, at 1,055,322 to 1,055,591
_21265
Position (kb)
1054
1055 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 1053.460 kb on - strand, within btsS at 1053.473 kb on + strand, within btsS at 1053.474 kb on - strand, within btsS at 1053.582 kb on - strand, within btsS at 1053.614 kb on - strand, within btsS at 1053.614 kb on - strand, within btsS at 1053.615 kb on + strand, within btsS at 1053.615 kb on + strand, within btsS at 1053.669 kb on + strand, within btsS at 1053.670 kb on - strand, within btsS at 1053.672 kb on + strand, within btsS at 1053.672 kb on + strand, within btsS at 1053.673 kb on - strand, within btsS at 1053.673 kb on - strand, within btsS at 1053.698 kb on + strand, within btsS at 1053.786 kb on + strand, within btsS at 1053.786 kb on + strand, within btsS at 1053.787 kb on - strand, within btsS at 1053.821 kb on - strand, within btsS at 1053.821 kb on - strand, within btsS at 1054.053 kb on - strand at 1054.117 kb on - strand at 1054.180 kb on - strand at 1054.188 kb on - strand at 1054.188 kb on - strand at 1054.228 kb on + strand at 1054.229 kb on - strand at 1054.229 kb on - strand at 1054.229 kb on - strand at 1054.285 kb on + strand at 1054.286 kb on - strand at 1054.382 kb on - strand at 1054.455 kb on - strand, within MCAODC_21255 at 1054.458 kb on - strand, within MCAODC_21255 at 1054.602 kb on + strand at 1054.602 kb on + strand at 1054.602 kb on + strand at 1054.602 kb on + strand at 1054.602 kb on + strand at 1054.602 kb on + strand at 1054.603 kb on - strand at 1054.603 kb on - strand at 1054.603 kb on - strand at 1054.683 kb on - strand at 1054.686 kb on + strand at 1054.705 kb on + strand at 1054.706 kb on - strand at 1054.706 kb on - strand at 1054.706 kb on - strand at 1054.706 kb on - strand at 1054.992 kb on + strand at 1054.992 kb on + strand at 1055.036 kb on + strand at 1055.036 kb on + strand at 1055.036 kb on + strand at 1055.037 kb on - strand at 1055.037 kb on - strand at 1055.037 kb on - strand at 1055.037 kb on - strand at 1055.037 kb on - strand at 1055.037 kb on - strand at 1055.037 kb on - strand at 1055.065 kb on - strand at 1055.072 kb on + strand at 1055.072 kb on + strand at 1055.119 kb on + strand at 1055.126 kb on + strand at 1055.204 kb on + strand at 1055.205 kb on - strand at 1055.205 kb on - strand at 1055.213 kb on - strand at 1055.234 kb on - strand at 1055.237 kb on + strand at 1055.237 kb on + strand at 1055.237 kb on + strand at 1055.237 kb on + strand at 1055.237 kb on + strand at 1055.237 kb on + strand at 1055.237 kb on + strand at 1055.237 kb on + strand at 1055.238 kb on - strand at 1055.238 kb on - strand at 1055.238 kb on - strand at 1055.238 kb on - strand at 1055.242 kb on + strand at 1055.242 kb on + strand at 1055.242 kb on + strand at 1055.242 kb on + strand at 1055.243 kb on - strand at 1055.243 kb on - strand at 1055.249 kb on + strand at 1055.249 kb on + strand at 1055.250 kb on - strand at 1055.250 kb on - strand at 1055.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 1,053,460 - btsS MCAODC_21250 0.57 -0.8 1,053,473 + btsS MCAODC_21250 0.57 +2.0 1,053,474 - btsS MCAODC_21250 0.57 -0.3 1,053,582 - btsS MCAODC_21250 0.64 -0.4 1,053,614 - btsS MCAODC_21250 0.66 -1.1 1,053,614 - btsS MCAODC_21250 0.66 -0.7 1,053,615 + btsS MCAODC_21250 0.66 +0.3 1,053,615 + btsS MCAODC_21250 0.66 +0.5 1,053,669 + btsS MCAODC_21250 0.69 +0.7 1,053,670 - btsS MCAODC_21250 0.69 -0.7 1,053,672 + btsS MCAODC_21250 0.69 -0.2 1,053,672 + btsS MCAODC_21250 0.69 +0.4 1,053,673 - btsS MCAODC_21250 0.69 -0.1 1,053,673 - btsS MCAODC_21250 0.69 -2.4 1,053,698 + btsS MCAODC_21250 0.71 -1.9 1,053,786 + btsS MCAODC_21250 0.76 -0.0 1,053,786 + btsS MCAODC_21250 0.76 +0.5 1,053,787 - btsS MCAODC_21250 0.76 +5.9 1,053,821 - btsS MCAODC_21250 0.78 -0.2 1,053,821 - btsS MCAODC_21250 0.78 +1.4 1,054,053 - -0.1 1,054,117 - +1.1 1,054,180 - +0.9 1,054,188 - -0.1 1,054,188 - -2.6 1,054,228 + -1.7 1,054,229 - -1.2 1,054,229 - +0.3 1,054,229 - +1.0 1,054,285 + +0.3 1,054,286 - -0.5 1,054,382 - +2.6 1,054,455 - MCAODC_21255 0.61 +0.5 1,054,458 - MCAODC_21255 0.65 +1.1 1,054,602 + +1.1 1,054,602 + -0.6 1,054,602 + +2.4 1,054,602 + +1.4 1,054,602 + +0.3 1,054,602 + +0.5 1,054,603 - -1.1 1,054,603 - -1.9 1,054,603 - -1.4 1,054,683 - +1.0 1,054,686 + +0.0 1,054,705 + +0.0 1,054,706 - -0.7 1,054,706 - -2.7 1,054,706 - +0.3 1,054,706 - +0.1 1,054,992 + -1.7 1,054,992 + -1.4 1,055,036 + +0.2 1,055,036 + +0.7 1,055,036 + +0.9 1,055,037 - -0.3 1,055,037 - -0.5 1,055,037 - +0.2 1,055,037 - +0.6 1,055,037 - -0.8 1,055,037 - +0.4 1,055,037 - -2.9 1,055,065 - +1.5 1,055,072 + +0.7 1,055,072 + -2.2 1,055,119 + -0.5 1,055,126 + -0.7 1,055,204 + -1.4 1,055,205 - +0.6 1,055,205 - +0.1 1,055,213 - -1.0 1,055,234 - +1.8 1,055,237 + +0.7 1,055,237 + +0.6 1,055,237 + +0.7 1,055,237 + -0.2 1,055,237 + -1.3 1,055,237 + -1.0 1,055,237 + +0.0 1,055,237 + -0.2 1,055,238 - +0.7 1,055,238 - +0.2 1,055,238 - +0.4 1,055,238 - +0.8 1,055,242 + -0.7 1,055,242 + +0.8 1,055,242 + +0.5 1,055,242 + +0.8 1,055,243 - -0.7 1,055,243 - -1.1 1,055,249 + -0.8 1,055,249 + +0.5 1,055,250 - +1.0 1,055,250 - -1.5 1,055,254 - -0.2
Or see this region's nucleotide sequence