Strain Fitness in Erwinia amylovora T8 around OLJFJH_15585

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_15580 and OLJFJH_15585 are separated by 133 nucleotidesOLJFJH_15585 and OLJFJH_15590 overlap by 1 nucleotides OLJFJH_15580: OLJFJH_15580 - flagellar hook-associated protein FlgK, at 3,286,781 to 3,288,436 _15580 OLJFJH_15585: OLJFJH_15585 - flagellar assembly peptidoglycan hydrolase FlgJ, at 3,288,570 to 3,289,511 _15585 OLJFJH_15590: OLJFJH_15590 - flagellar biosynthesis protein FlgA, at 3,289,511 to 3,290,617 _15590 Position (kb) 3288 3289 3290Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3287.586 kb on - strand, within OLJFJH_15580at 3287.608 kb on + strand, within OLJFJH_15580at 3287.758 kb on + strand, within OLJFJH_15580at 3287.759 kb on - strand, within OLJFJH_15580at 3287.763 kb on + strand, within OLJFJH_15580at 3287.763 kb on + strand, within OLJFJH_15580at 3287.764 kb on - strand, within OLJFJH_15580at 3287.836 kb on + strand, within OLJFJH_15580at 3287.922 kb on + strand, within OLJFJH_15580at 3287.922 kb on + strand, within OLJFJH_15580at 3287.923 kb on - strand, within OLJFJH_15580at 3287.926 kb on + strand, within OLJFJH_15580at 3287.944 kb on + strand, within OLJFJH_15580at 3287.988 kb on + strand, within OLJFJH_15580at 3287.989 kb on - strand, within OLJFJH_15580at 3288.094 kb on + strand, within OLJFJH_15580at 3288.095 kb on - strand, within OLJFJH_15580at 3288.095 kb on - strand, within OLJFJH_15580at 3288.276 kb on + strandat 3288.279 kb on + strandat 3288.279 kb on + strandat 3288.351 kb on + strandat 3288.352 kb on - strandat 3288.352 kb on - strandat 3288.422 kb on - strandat 3288.425 kb on + strandat 3288.665 kb on - strand, within OLJFJH_15585at 3288.665 kb on - strand, within OLJFJH_15585at 3288.797 kb on - strand, within OLJFJH_15585at 3288.805 kb on + strand, within OLJFJH_15585at 3288.850 kb on + strand, within OLJFJH_15585at 3288.850 kb on + strand, within OLJFJH_15585at 3288.850 kb on + strand, within OLJFJH_15585at 3289.119 kb on + strand, within OLJFJH_15585at 3289.119 kb on + strand, within OLJFJH_15585at 3289.157 kb on + strand, within OLJFJH_15585at 3289.291 kb on + strand, within OLJFJH_15585at 3289.291 kb on + strand, within OLJFJH_15585at 3289.292 kb on - strand, within OLJFJH_15585at 3289.326 kb on + strand, within OLJFJH_15585at 3289.327 kb on - strand, within OLJFJH_15585at 3289.359 kb on - strand, within OLJFJH_15585at 3289.359 kb on - strand, within OLJFJH_15585at 3289.516 kb on + strandat 3289.516 kb on + strandat 3289.517 kb on - strandat 3289.562 kb on + strandat 3289.563 kb on - strandat 3289.567 kb on + strandat 3289.676 kb on - strand, within OLJFJH_15590at 3289.679 kb on + strand, within OLJFJH_15590at 3289.680 kb on - strand, within OLJFJH_15590at 3289.680 kb on - strand, within OLJFJH_15590at 3289.680 kb on - strand, within OLJFJH_15590at 3289.680 kb on - strand, within OLJFJH_15590at 3289.680 kb on - strand, within OLJFJH_15590at 3289.727 kb on - strand, within OLJFJH_15590at 3289.787 kb on - strand, within OLJFJH_15590at 3289.922 kb on - strand, within OLJFJH_15590at 3290.078 kb on - strand, within OLJFJH_15590at 3290.078 kb on - strand, within OLJFJH_15590at 3290.116 kb on + strand, within OLJFJH_15590at 3290.209 kb on - strand, within OLJFJH_15590at 3290.244 kb on - strand, within OLJFJH_15590at 3290.247 kb on - strand, within OLJFJH_15590at 3290.374 kb on + strand, within OLJFJH_15590

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2
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3,287,586 - OLJFJH_15580 0.49 -0.6
3,287,608 + OLJFJH_15580 0.50 +1.6
3,287,758 + OLJFJH_15580 0.59 -1.3
3,287,759 - OLJFJH_15580 0.59 -0.4
3,287,763 + OLJFJH_15580 0.59 -1.8
3,287,763 + OLJFJH_15580 0.59 -0.2
3,287,764 - OLJFJH_15580 0.59 -0.4
3,287,836 + OLJFJH_15580 0.64 +0.7
3,287,922 + OLJFJH_15580 0.69 -0.3
3,287,922 + OLJFJH_15580 0.69 +2.3
3,287,923 - OLJFJH_15580 0.69 -1.6
3,287,926 + OLJFJH_15580 0.69 -0.8
3,287,944 + OLJFJH_15580 0.70 -1.3
3,287,988 + OLJFJH_15580 0.73 -0.3
3,287,989 - OLJFJH_15580 0.73 -0.2
3,288,094 + OLJFJH_15580 0.79 -1.3
3,288,095 - OLJFJH_15580 0.79 -0.1
3,288,095 - OLJFJH_15580 0.79 -2.6
3,288,276 + -0.5
3,288,279 + -0.5
3,288,279 + -0.5
3,288,351 + -0.7
3,288,352 - -1.9
3,288,352 - -1.8
3,288,422 - -2.9
3,288,425 + +0.8
3,288,665 - OLJFJH_15585 0.10 -0.2
3,288,665 - OLJFJH_15585 0.10 -0.9
3,288,797 - OLJFJH_15585 0.24 -0.4
3,288,805 + OLJFJH_15585 0.25 -2.0
3,288,850 + OLJFJH_15585 0.30 -2.4
3,288,850 + OLJFJH_15585 0.30 -1.1
3,288,850 + OLJFJH_15585 0.30 -3.0
3,289,119 + OLJFJH_15585 0.58 -0.9
3,289,119 + OLJFJH_15585 0.58 -0.2
3,289,157 + OLJFJH_15585 0.62 -0.3
3,289,291 + OLJFJH_15585 0.77 -2.3
3,289,291 + OLJFJH_15585 0.77 +0.5
3,289,292 - OLJFJH_15585 0.77 -1.2
3,289,326 + OLJFJH_15585 0.80 -1.8
3,289,327 - OLJFJH_15585 0.80 -1.7
3,289,359 - OLJFJH_15585 0.84 -0.7
3,289,359 - OLJFJH_15585 0.84 +0.7
3,289,516 + -0.5
3,289,516 + +0.0
3,289,517 - -0.3
3,289,562 + -1.8
3,289,563 - +0.5
3,289,567 + -0.6
3,289,676 - OLJFJH_15590 0.15 -0.3
3,289,679 + OLJFJH_15590 0.15 -1.3
3,289,680 - OLJFJH_15590 0.15 +1.0
3,289,680 - OLJFJH_15590 0.15 -0.2
3,289,680 - OLJFJH_15590 0.15 -0.1
3,289,680 - OLJFJH_15590 0.15 -1.2
3,289,680 - OLJFJH_15590 0.15 -0.1
3,289,727 - OLJFJH_15590 0.20 -1.0
3,289,787 - OLJFJH_15590 0.25 -1.3
3,289,922 - OLJFJH_15590 0.37 -0.1
3,290,078 - OLJFJH_15590 0.51 -0.7
3,290,078 - OLJFJH_15590 0.51 -1.7
3,290,116 + OLJFJH_15590 0.55 -2.3
3,290,209 - OLJFJH_15590 0.63 -2.9
3,290,244 - OLJFJH_15590 0.66 -0.1
3,290,247 - OLJFJH_15590 0.66 -0.2
3,290,374 + OLJFJH_15590 0.78 +0.0

Or see this region's nucleotide sequence