Strain Fitness in Rahnella sp. WP5 around EX31_RS09240

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09230 and EX31_RS09235 are separated by 7 nucleotidesEX31_RS09235 and EX31_RS09240 are separated by 90 nucleotidesEX31_RS09240 and EX31_RS09245 are separated by 30 nucleotidesEX31_RS09245 and EX31_RS09250 are separated by 9 nucleotides EX31_RS09230: EX31_RS09230 - LysR family transcriptional regulator, at 44,316 to 45,215 _RS09230 EX31_RS09235: EX31_RS09235 - M55 family metallopeptidase, at 45,223 to 46,044 _RS09235 EX31_RS09240: EX31_RS09240 - D-aminopeptidase, at 46,135 to 47,199 _RS09240 EX31_RS09245: EX31_RS09245 - ABC transporter permease subunit, at 47,230 to 48,141 _RS09245 EX31_RS09250: EX31_RS09250 - ABC transporter permease subunit, at 48,151 to 49,071 _RS09250 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1at 45.177 kb on + strandat 45.207 kb on + strandat 45.225 kb on - strandat 45.271 kb on - strandat 45.274 kb on - strandat 45.274 kb on - strandat 45.530 kb on + strand, within EX31_RS09235at 45.530 kb on + strand, within EX31_RS09235at 45.530 kb on + strand, within EX31_RS09235at 45.531 kb on - strand, within EX31_RS09235at 45.546 kb on - strand, within EX31_RS09235at 45.631 kb on + strand, within EX31_RS09235at 45.631 kb on + strand, within EX31_RS09235at 45.631 kb on + strand, within EX31_RS09235at 45.631 kb on + strand, within EX31_RS09235at 45.632 kb on - strand, within EX31_RS09235at 45.632 kb on - strand, within EX31_RS09235at 45.759 kb on - strand, within EX31_RS09235at 46.084 kb on - strandat 46.137 kb on - strandat 46.150 kb on - strandat 46.153 kb on + strandat 46.154 kb on - strandat 46.154 kb on - strandat 46.227 kb on + strandat 46.228 kb on - strandat 46.443 kb on + strand, within EX31_RS09240at 46.565 kb on - strand, within EX31_RS09240at 46.571 kb on - strand, within EX31_RS09240at 46.624 kb on + strand, within EX31_RS09240at 46.625 kb on - strand, within EX31_RS09240at 46.744 kb on - strand, within EX31_RS09240at 46.744 kb on - strand, within EX31_RS09240at 46.748 kb on + strand, within EX31_RS09240at 46.748 kb on + strand, within EX31_RS09240at 46.749 kb on - strand, within EX31_RS09240at 46.749 kb on - strand, within EX31_RS09240at 46.846 kb on + strand, within EX31_RS09240at 46.846 kb on + strand, within EX31_RS09240at 47.228 kb on + strandat 47.229 kb on - strandat 47.231 kb on + strandat 47.232 kb on - strandat 47.283 kb on + strandat 47.284 kb on - strandat 47.355 kb on + strand, within EX31_RS09245at 47.355 kb on + strand, within EX31_RS09245at 47.355 kb on + strand, within EX31_RS09245at 47.356 kb on - strand, within EX31_RS09245at 47.356 kb on - strand, within EX31_RS09245at 47.358 kb on + strand, within EX31_RS09245at 47.446 kb on - strand, within EX31_RS09245at 47.458 kb on - strand, within EX31_RS09245at 47.506 kb on - strand, within EX31_RS09245at 47.586 kb on + strand, within EX31_RS09245at 47.586 kb on + strand, within EX31_RS09245at 47.587 kb on - strand, within EX31_RS09245at 47.714 kb on - strand, within EX31_RS09245at 47.762 kb on + strand, within EX31_RS09245at 47.849 kb on + strand, within EX31_RS09245at 47.849 kb on + strand, within EX31_RS09245at 47.850 kb on - strand, within EX31_RS09245at 47.850 kb on - strand, within EX31_RS09245at 48.076 kb on - strandat 48.111 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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45,177 + +0.9
45,207 + -0.2
45,225 - -0.3
45,271 - -0.9
45,274 - +1.2
45,274 - -0.5
45,530 + EX31_RS09235 0.37 -0.5
45,530 + EX31_RS09235 0.37 -0.2
45,530 + EX31_RS09235 0.37 -2.7
45,531 - EX31_RS09235 0.37 -0.0
45,546 - EX31_RS09235 0.39 +1.4
45,631 + EX31_RS09235 0.50 -0.6
45,631 + EX31_RS09235 0.50 -0.3
45,631 + EX31_RS09235 0.50 -0.2
45,631 + EX31_RS09235 0.50 +0.3
45,632 - EX31_RS09235 0.50 -0.6
45,632 - EX31_RS09235 0.50 -0.3
45,759 - EX31_RS09235 0.65 -0.7
46,084 - -0.3
46,137 - +0.5
46,150 - +0.5
46,153 + -1.1
46,154 - +0.3
46,154 - +0.5
46,227 + +1.6
46,228 - +0.3
46,443 + EX31_RS09240 0.29 +0.2
46,565 - EX31_RS09240 0.40 +0.5
46,571 - EX31_RS09240 0.41 -0.6
46,624 + EX31_RS09240 0.46 -0.7
46,625 - EX31_RS09240 0.46 -0.0
46,744 - EX31_RS09240 0.57 -0.8
46,744 - EX31_RS09240 0.57 +0.4
46,748 + EX31_RS09240 0.58 -0.4
46,748 + EX31_RS09240 0.58 -0.2
46,749 - EX31_RS09240 0.58 -1.0
46,749 - EX31_RS09240 0.58 -0.6
46,846 + EX31_RS09240 0.67 -0.8
46,846 + EX31_RS09240 0.67 -0.4
47,228 + -0.4
47,229 - +0.6
47,231 + -0.1
47,232 - -0.4
47,283 + -0.6
47,284 - -0.5
47,355 + EX31_RS09245 0.14 -0.1
47,355 + EX31_RS09245 0.14 +0.4
47,355 + EX31_RS09245 0.14 -1.6
47,356 - EX31_RS09245 0.14 -2.0
47,356 - EX31_RS09245 0.14 +0.9
47,358 + EX31_RS09245 0.14 -0.0
47,446 - EX31_RS09245 0.24 +0.8
47,458 - EX31_RS09245 0.25 +0.2
47,506 - EX31_RS09245 0.30 -0.2
47,586 + EX31_RS09245 0.39 -2.1
47,586 + EX31_RS09245 0.39 -0.5
47,587 - EX31_RS09245 0.39 -0.7
47,714 - EX31_RS09245 0.53 +1.6
47,762 + EX31_RS09245 0.58 -1.8
47,849 + EX31_RS09245 0.68 +1.7
47,849 + EX31_RS09245 0.68 -0.4
47,850 - EX31_RS09245 0.68 +0.6
47,850 - EX31_RS09245 0.68 -0.5
48,076 - -0.0
48,111 + -0.5

Or see this region's nucleotide sequence