Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08915 and EX31_RS08920 are separated by 124 nucleotides EX31_RS08920 and EX31_RS08925 are separated by 89 nucleotides EX31_RS08925 and EX31_RS08930 are separated by 118 nucleotides EX31_RS08930 and EX31_RS08935 are separated by 95 nucleotides EX31_RS08935 and EX31_RS08940 are separated by 38 nucleotides
EX31_RS08915: EX31_RS08915 - fumarate reductase subunit FrdD, at 297,744 to 298,103
_RS08915
EX31_RS08920: EX31_RS08920 - outer membrane lipoprotein Blc, at 298,228 to 298,752
_RS08920
EX31_RS08925: EX31_RS08925 - entericidin A/B family lipoprotein, at 298,842 to 298,976
_RS08925
EX31_RS08930: EX31_RS08930 - entericidin A/B family lipoprotein, at 299,095 to 299,223
_RS08930
EX31_RS08935: EX31_RS08935 - elongation factor P, at 299,319 to 299,885
_RS08935
EX31_RS08940: EX31_RS08940 - EF-P beta-lysylation protein EpmB, at 299,924 to 300,952
_RS08940
Position (kb) 298
299 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 298.066 kb on + strand, within EX31_RS08915 at 298.066 kb on + strand, within EX31_RS08915 at 298.066 kb on + strand, within EX31_RS08915 at 298.066 kb on + strand, within EX31_RS08915 at 298.066 kb on + strand, within EX31_RS08915 at 298.067 kb on - strand, within EX31_RS08915 at 298.067 kb on - strand, within EX31_RS08915 at 298.067 kb on - strand, within EX31_RS08915 at 298.067 kb on - strand, within EX31_RS08915 at 298.067 kb on - strand, within EX31_RS08915 at 298.067 kb on - strand, within EX31_RS08915 at 298.067 kb on - strand, within EX31_RS08915 at 298.070 kb on + strand at 298.070 kb on + strand at 298.070 kb on + strand at 298.071 kb on - strand at 298.071 kb on - strand at 298.071 kb on - strand at 298.071 kb on - strand at 298.190 kb on + strand at 298.209 kb on + strand at 298.209 kb on + strand at 298.210 kb on - strand at 298.212 kb on + strand at 298.213 kb on - strand at 298.233 kb on + strand at 298.269 kb on + strand at 298.269 kb on + strand at 298.269 kb on + strand at 298.269 kb on + strand at 298.269 kb on + strand at 298.269 kb on + strand at 298.269 kb on + strand at 298.270 kb on - strand at 298.270 kb on - strand at 298.270 kb on - strand at 298.270 kb on - strand at 298.270 kb on - strand at 298.270 kb on - strand at 298.270 kb on - strand at 298.289 kb on + strand, within EX31_RS08920 at 298.355 kb on - strand, within EX31_RS08920 at 298.355 kb on - strand, within EX31_RS08920 at 298.377 kb on + strand, within EX31_RS08920 at 298.377 kb on + strand, within EX31_RS08920 at 298.378 kb on - strand, within EX31_RS08920 at 298.378 kb on - strand, within EX31_RS08920 at 298.378 kb on - strand, within EX31_RS08920 at 298.414 kb on + strand, within EX31_RS08920 at 298.414 kb on + strand, within EX31_RS08920 at 298.415 kb on - strand, within EX31_RS08920 at 298.439 kb on + strand, within EX31_RS08920 at 298.449 kb on + strand, within EX31_RS08920 at 298.449 kb on + strand, within EX31_RS08920 at 298.461 kb on + strand, within EX31_RS08920 at 298.476 kb on + strand, within EX31_RS08920 at 298.477 kb on - strand, within EX31_RS08920 at 298.477 kb on - strand, within EX31_RS08920 at 298.477 kb on - strand, within EX31_RS08920 at 298.504 kb on + strand, within EX31_RS08920 at 298.505 kb on - strand, within EX31_RS08920 at 298.505 kb on - strand, within EX31_RS08920 at 298.561 kb on + strand, within EX31_RS08920 at 298.561 kb on + strand, within EX31_RS08920 at 298.562 kb on - strand, within EX31_RS08920 at 298.562 kb on - strand, within EX31_RS08920 at 298.570 kb on + strand, within EX31_RS08920 at 298.570 kb on + strand, within EX31_RS08920 at 298.570 kb on + strand, within EX31_RS08920 at 298.571 kb on - strand, within EX31_RS08920 at 298.572 kb on + strand, within EX31_RS08920 at 298.572 kb on + strand, within EX31_RS08920 at 298.572 kb on + strand, within EX31_RS08920 at 298.572 kb on + strand, within EX31_RS08920 at 298.572 kb on + strand, within EX31_RS08920 at 298.572 kb on + strand, within EX31_RS08920 at 298.572 kb on + strand, within EX31_RS08920 at 298.573 kb on - strand, within EX31_RS08920 at 298.573 kb on - strand, within EX31_RS08920 at 298.573 kb on - strand, within EX31_RS08920 at 298.573 kb on - strand, within EX31_RS08920 at 298.573 kb on - strand, within EX31_RS08920 at 298.580 kb on + strand, within EX31_RS08920 at 298.580 kb on + strand, within EX31_RS08920 at 298.580 kb on + strand, within EX31_RS08920 at 298.580 kb on + strand, within EX31_RS08920 at 298.581 kb on - strand, within EX31_RS08920 at 298.581 kb on - strand, within EX31_RS08920 at 298.581 kb on - strand, within EX31_RS08920 at 298.626 kb on + strand, within EX31_RS08920 at 298.633 kb on + strand, within EX31_RS08920 at 298.633 kb on + strand, within EX31_RS08920 at 298.633 kb on + strand, within EX31_RS08920 at 298.633 kb on + strand, within EX31_RS08920 at 298.633 kb on + strand, within EX31_RS08920 at 298.634 kb on - strand, within EX31_RS08920 at 298.634 kb on - strand, within EX31_RS08920 at 298.634 kb on - strand, within EX31_RS08920 at 298.653 kb on + strand, within EX31_RS08920 at 298.757 kb on + strand at 298.757 kb on + strand at 298.757 kb on + strand at 298.757 kb on + strand at 298.757 kb on + strand at 298.757 kb on + strand at 298.757 kb on + strand at 298.757 kb on + strand at 298.757 kb on + strand at 298.757 kb on + strand at 298.757 kb on + strand at 298.757 kb on + strand at 298.757 kb on + strand at 298.758 kb on - strand at 298.758 kb on - strand at 298.758 kb on - strand at 298.758 kb on - strand at 298.764 kb on + strand at 298.765 kb on - strand at 298.765 kb on - strand at 298.822 kb on + strand at 298.823 kb on - strand at 298.823 kb on - strand at 298.823 kb on - strand at 298.823 kb on - strand at 298.823 kb on - strand at 298.823 kb on - strand at 298.826 kb on + strand at 298.826 kb on + strand at 298.826 kb on + strand at 298.826 kb on + strand at 298.826 kb on + strand at 298.827 kb on - strand at 298.844 kb on - strand at 298.893 kb on + strand, within EX31_RS08925 at 298.894 kb on - strand, within EX31_RS08925 at 298.894 kb on - strand, within EX31_RS08925 at 298.937 kb on + strand, within EX31_RS08925 at 298.937 kb on + strand, within EX31_RS08925 at 298.937 kb on + strand, within EX31_RS08925 at 298.938 kb on - strand, within EX31_RS08925 at 298.961 kb on + strand, within EX31_RS08925 at 298.961 kb on + strand, within EX31_RS08925 at 298.962 kb on - strand, within EX31_RS08925 at 298.976 kb on + strand at 298.977 kb on - strand at 298.977 kb on - strand at 298.977 kb on - strand at 298.977 kb on - strand at 298.977 kb on - strand at 298.977 kb on - strand at 298.978 kb on + strand at 298.979 kb on - strand at 298.979 kb on - strand at 298.991 kb on + strand at 298.991 kb on + strand at 298.992 kb on - strand at 298.994 kb on - strand at 298.994 kb on - strand at 299.003 kb on + strand at 299.003 kb on + strand at 299.004 kb on - strand at 299.004 kb on - strand at 299.008 kb on + strand at 299.009 kb on - strand at 299.020 kb on - strand at 299.024 kb on + strand at 299.024 kb on + strand at 299.024 kb on + strand at 299.024 kb on + strand at 299.029 kb on - strand at 299.040 kb on + strand at 299.042 kb on + strand at 299.042 kb on + strand at 299.042 kb on + strand at 299.042 kb on + strand at 299.042 kb on + strand at 299.042 kb on + strand at 299.042 kb on + strand at 299.042 kb on + strand at 299.042 kb on + strand at 299.042 kb on + strand at 299.042 kb on + strand at 299.043 kb on - strand at 299.043 kb on - strand at 299.043 kb on - strand at 299.043 kb on - strand at 299.043 kb on - strand at 299.043 kb on - strand at 299.043 kb on - strand at 299.043 kb on - strand at 299.043 kb on - strand at 299.043 kb on - strand at 299.043 kb on - strand at 299.043 kb on - strand at 299.227 kb on - strand at 299.227 kb on - strand at 299.227 kb on - strand at 299.232 kb on + strand at 299.232 kb on + strand at 299.302 kb on + strand at 299.302 kb on + strand at 299.303 kb on - strand at 299.303 kb on - strand at 299.305 kb on + strand at 299.305 kb on + strand at 299.305 kb on + strand at 299.305 kb on + strand at 299.305 kb on + strand at 299.305 kb on + strand at 299.305 kb on + strand at 299.306 kb on - strand at 299.306 kb on - strand at 299.306 kb on - strand at 299.306 kb on - strand at 299.306 kb on - strand at 299.306 kb on - strand at 299.306 kb on - strand at 299.306 kb on - strand at 299.306 kb on - strand at 299.309 kb on + strand at 299.309 kb on + strand at 299.309 kb on + strand at 299.309 kb on + strand at 299.309 kb on + strand at 299.310 kb on - strand at 299.310 kb on - strand at 299.310 kb on - strand at 299.320 kb on + strand at 299.320 kb on + strand at 299.320 kb on + strand at 299.321 kb on - strand at 299.321 kb on - strand at 299.321 kb on - strand at 299.321 kb on - strand at 299.321 kb on - strand at 299.911 kb on - strand at 299.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 298,066 + EX31_RS08915 0.89 -0.2 298,066 + EX31_RS08915 0.89 -0.1 298,066 + EX31_RS08915 0.89 +0.0 298,066 + EX31_RS08915 0.89 -0.2 298,066 + EX31_RS08915 0.89 +0.7 298,067 - EX31_RS08915 0.90 +0.7 298,067 - EX31_RS08915 0.90 -1.5 298,067 - EX31_RS08915 0.90 -1.4 298,067 - EX31_RS08915 0.90 -0.3 298,067 - EX31_RS08915 0.90 +1.7 298,067 - EX31_RS08915 0.90 -0.4 298,067 - EX31_RS08915 0.90 -1.3 298,070 + -0.5 298,070 + -0.8 298,070 + -0.2 298,071 - +0.3 298,071 - -0.1 298,071 - -0.0 298,071 - -0.1 298,190 + +0.3 298,209 + -0.0 298,209 + -0.1 298,210 - +0.4 298,212 + -1.5 298,213 - +0.3 298,233 + -1.2 298,269 + +0.5 298,269 + -0.2 298,269 + -0.5 298,269 + -0.0 298,269 + +0.1 298,269 + -0.3 298,269 + -1.8 298,270 - +0.3 298,270 - -0.7 298,270 - -0.1 298,270 - -0.3 298,270 - -0.0 298,270 - -0.3 298,270 - -0.1 298,289 + EX31_RS08920 0.12 -0.1 298,355 - EX31_RS08920 0.24 -0.2 298,355 - EX31_RS08920 0.24 -0.3 298,377 + EX31_RS08920 0.28 -0.3 298,377 + EX31_RS08920 0.28 -0.2 298,378 - EX31_RS08920 0.29 -1.2 298,378 - EX31_RS08920 0.29 -0.1 298,378 - EX31_RS08920 0.29 +0.8 298,414 + EX31_RS08920 0.35 -0.3 298,414 + EX31_RS08920 0.35 -0.0 298,415 - EX31_RS08920 0.36 -0.8 298,439 + EX31_RS08920 0.40 -0.0 298,449 + EX31_RS08920 0.42 +0.2 298,449 + EX31_RS08920 0.42 +0.1 298,461 + EX31_RS08920 0.44 -0.1 298,476 + EX31_RS08920 0.47 -0.1 298,477 - EX31_RS08920 0.47 -0.8 298,477 - EX31_RS08920 0.47 -0.3 298,477 - EX31_RS08920 0.47 -1.3 298,504 + EX31_RS08920 0.53 -0.3 298,505 - EX31_RS08920 0.53 -0.4 298,505 - EX31_RS08920 0.53 -0.0 298,561 + EX31_RS08920 0.63 -0.3 298,561 + EX31_RS08920 0.63 +0.2 298,562 - EX31_RS08920 0.64 -0.2 298,562 - EX31_RS08920 0.64 -0.1 298,570 + EX31_RS08920 0.65 +0.3 298,570 + EX31_RS08920 0.65 +1.1 298,570 + EX31_RS08920 0.65 -0.2 298,571 - EX31_RS08920 0.65 -0.8 298,572 + EX31_RS08920 0.66 -0.5 298,572 + EX31_RS08920 0.66 -0.8 298,572 + EX31_RS08920 0.66 -0.0 298,572 + EX31_RS08920 0.66 +0.4 298,572 + EX31_RS08920 0.66 -2.1 298,572 + EX31_RS08920 0.66 +0.2 298,572 + EX31_RS08920 0.66 -0.4 298,573 - EX31_RS08920 0.66 +0.2 298,573 - EX31_RS08920 0.66 -0.9 298,573 - EX31_RS08920 0.66 -0.9 298,573 - EX31_RS08920 0.66 +0.4 298,573 - EX31_RS08920 0.66 +0.1 298,580 + EX31_RS08920 0.67 -0.9 298,580 + EX31_RS08920 0.67 -1.4 298,580 + EX31_RS08920 0.67 -0.7 298,580 + EX31_RS08920 0.67 -1.0 298,581 - EX31_RS08920 0.67 -2.8 298,581 - EX31_RS08920 0.67 -0.5 298,581 - EX31_RS08920 0.67 +0.1 298,626 + EX31_RS08920 0.76 +0.7 298,633 + EX31_RS08920 0.77 -0.4 298,633 + EX31_RS08920 0.77 +0.6 298,633 + EX31_RS08920 0.77 -0.5 298,633 + EX31_RS08920 0.77 -0.7 298,633 + EX31_RS08920 0.77 +0.0 298,634 - EX31_RS08920 0.77 -0.6 298,634 - EX31_RS08920 0.77 +0.2 298,634 - EX31_RS08920 0.77 +0.0 298,653 + EX31_RS08920 0.81 -0.0 298,757 + -0.3 298,757 + +0.2 298,757 + -0.2 298,757 + -0.9 298,757 + +0.3 298,757 + -0.6 298,757 + +0.1 298,757 + -0.5 298,757 + -0.1 298,757 + +0.6 298,757 + +0.4 298,757 + -0.0 298,757 + +0.6 298,758 - -0.1 298,758 - +0.7 298,758 - -0.0 298,758 - +0.2 298,764 + +0.9 298,765 - -0.3 298,765 - -0.2 298,822 + -0.9 298,823 - -1.0 298,823 - -0.2 298,823 - +0.5 298,823 - -0.4 298,823 - -0.7 298,823 - +1.4 298,826 + -0.7 298,826 + -0.4 298,826 + -0.4 298,826 + -1.8 298,826 + -1.6 298,827 - -0.5 298,844 - -0.5 298,893 + EX31_RS08925 0.38 -0.5 298,894 - EX31_RS08925 0.39 -1.1 298,894 - EX31_RS08925 0.39 +0.1 298,937 + EX31_RS08925 0.70 -0.3 298,937 + EX31_RS08925 0.70 +0.3 298,937 + EX31_RS08925 0.70 -0.8 298,938 - EX31_RS08925 0.71 -1.2 298,961 + EX31_RS08925 0.88 -1.0 298,961 + EX31_RS08925 0.88 -1.4 298,962 - EX31_RS08925 0.89 -1.0 298,976 + -0.6 298,977 - -0.9 298,977 - -2.4 298,977 - +0.3 298,977 - +0.1 298,977 - -0.3 298,977 - +0.1 298,978 + -1.8 298,979 - +0.2 298,979 - -1.7 298,991 + -0.0 298,991 + -0.9 298,992 - -1.2 298,994 - -0.0 298,994 - -0.1 299,003 + -0.3 299,003 + -0.8 299,004 - -0.0 299,004 - -0.4 299,008 + -1.9 299,009 - +0.0 299,020 - -0.3 299,024 + +0.1 299,024 + -0.1 299,024 + -0.0 299,024 + -0.3 299,029 - -0.3 299,040 + -1.4 299,042 + -0.2 299,042 + -0.1 299,042 + +0.1 299,042 + -0.5 299,042 + -2.4 299,042 + -0.6 299,042 + -2.2 299,042 + -0.2 299,042 + -0.1 299,042 + -0.2 299,042 + -1.8 299,043 - -0.3 299,043 - +0.7 299,043 - +0.1 299,043 - -0.2 299,043 - +0.3 299,043 - +0.2 299,043 - +0.1 299,043 - +0.0 299,043 - -0.8 299,043 - -0.5 299,043 - -0.2 299,043 - +0.4 299,227 - +0.4 299,227 - +0.2 299,227 - -0.1 299,232 + -0.3 299,232 + -0.3 299,302 + -0.6 299,302 + -1.0 299,303 - +0.4 299,303 - -0.1 299,305 + +0.7 299,305 + +0.2 299,305 + +0.8 299,305 + -0.5 299,305 + -0.9 299,305 + +0.1 299,305 + -0.8 299,306 - +0.2 299,306 - +0.3 299,306 - +0.0 299,306 - -0.4 299,306 - +0.3 299,306 - +0.0 299,306 - -1.3 299,306 - -0.3 299,306 - -0.8 299,309 + +1.1 299,309 + -1.5 299,309 + +0.4 299,309 + +0.1 299,309 + -1.4 299,310 - -0.5 299,310 - -0.5 299,310 - +0.4 299,320 + -0.3 299,320 + -0.4 299,320 + -0.8 299,321 - -0.5 299,321 - +0.8 299,321 - +0.5 299,321 - -0.0 299,321 - +0.0 299,911 - +0.8 299,911 - -1.0
Or see this region's nucleotide sequence