Strain Fitness in Rahnella sp. WP5 around EX31_RS13690

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13685 and EX31_RS13690 are separated by 189 nucleotidesEX31_RS13690 and EX31_RS13695 are separated by 227 nucleotidesEX31_RS13695 and EX31_RS13700 are separated by 96 nucleotides EX31_RS13685: EX31_RS13685 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 176,174 to 177,532 _RS13685 EX31_RS13690: EX31_RS13690 - MFS transporter, at 177,722 to 179,020 _RS13690 EX31_RS13695: EX31_RS13695 - 5S ribosomal RNA, at 179,248 to 179,363 _RS13695 EX31_RS13700: EX31_RS13700 - 23S ribosomal RNA, at 179,460 to 179,528 _RS13700 Position (kb) 177 178 179 180Strain fitness (log2 ratio) -2 -1 0 1at 177.531 kb on - strandat 177.540 kb on + strandat 177.575 kb on - strandat 177.575 kb on - strandat 177.576 kb on + strandat 177.634 kb on + strandat 177.641 kb on - strandat 177.643 kb on - strandat 177.671 kb on + strandat 177.680 kb on - strandat 177.689 kb on + strandat 177.798 kb on + strandat 177.799 kb on - strandat 177.809 kb on + strandat 177.818 kb on + strandat 177.819 kb on - strandat 177.821 kb on - strandat 177.849 kb on + strandat 177.889 kb on - strand, within EX31_RS13690at 177.945 kb on - strand, within EX31_RS13690at 178.011 kb on + strand, within EX31_RS13690at 178.011 kb on + strand, within EX31_RS13690at 178.011 kb on + strand, within EX31_RS13690at 178.012 kb on - strand, within EX31_RS13690at 178.080 kb on - strand, within EX31_RS13690at 178.087 kb on + strand, within EX31_RS13690at 178.088 kb on - strand, within EX31_RS13690at 178.088 kb on - strand, within EX31_RS13690at 178.088 kb on - strand, within EX31_RS13690at 178.103 kb on + strand, within EX31_RS13690at 178.145 kb on - strand, within EX31_RS13690at 178.227 kb on + strand, within EX31_RS13690at 178.227 kb on + strand, within EX31_RS13690at 178.227 kb on + strand, within EX31_RS13690at 178.227 kb on + strand, within EX31_RS13690at 178.227 kb on + strand, within EX31_RS13690at 178.228 kb on - strand, within EX31_RS13690at 178.228 kb on - strand, within EX31_RS13690at 178.241 kb on - strand, within EX31_RS13690at 178.242 kb on + strand, within EX31_RS13690at 178.242 kb on + strand, within EX31_RS13690at 178.242 kb on + strand, within EX31_RS13690at 178.243 kb on - strand, within EX31_RS13690at 178.274 kb on + strand, within EX31_RS13690at 178.274 kb on + strand, within EX31_RS13690at 178.275 kb on - strand, within EX31_RS13690at 178.275 kb on - strand, within EX31_RS13690at 178.285 kb on + strand, within EX31_RS13690at 178.285 kb on + strand, within EX31_RS13690at 178.285 kb on + strand, within EX31_RS13690at 178.285 kb on + strand, within EX31_RS13690at 178.285 kb on + strand, within EX31_RS13690at 178.285 kb on + strand, within EX31_RS13690at 178.285 kb on + strand, within EX31_RS13690at 178.286 kb on - strand, within EX31_RS13690at 178.286 kb on - strand, within EX31_RS13690at 178.286 kb on - strand, within EX31_RS13690at 178.297 kb on + strand, within EX31_RS13690at 178.297 kb on + strand, within EX31_RS13690at 178.297 kb on + strand, within EX31_RS13690at 178.298 kb on - strand, within EX31_RS13690at 178.333 kb on + strand, within EX31_RS13690at 178.333 kb on + strand, within EX31_RS13690at 178.463 kb on + strand, within EX31_RS13690at 178.476 kb on - strand, within EX31_RS13690at 178.476 kb on - strand, within EX31_RS13690at 178.497 kb on - strand, within EX31_RS13690at 178.497 kb on - strand, within EX31_RS13690at 178.500 kb on - strand, within EX31_RS13690at 178.500 kb on - strand, within EX31_RS13690at 178.525 kb on - strand, within EX31_RS13690at 178.576 kb on + strand, within EX31_RS13690at 178.576 kb on + strand, within EX31_RS13690at 178.578 kb on + strand, within EX31_RS13690at 178.578 kb on + strand, within EX31_RS13690at 178.578 kb on + strand, within EX31_RS13690at 178.578 kb on + strand, within EX31_RS13690at 178.578 kb on + strand, within EX31_RS13690at 178.578 kb on + strand, within EX31_RS13690at 178.578 kb on + strand, within EX31_RS13690at 178.578 kb on + strand, within EX31_RS13690at 178.579 kb on - strand, within EX31_RS13690at 178.579 kb on - strand, within EX31_RS13690at 178.579 kb on - strand, within EX31_RS13690at 178.579 kb on - strand, within EX31_RS13690at 178.579 kb on - strand, within EX31_RS13690at 178.643 kb on + strand, within EX31_RS13690at 178.644 kb on - strand, within EX31_RS13690at 178.665 kb on - strand, within EX31_RS13690at 178.674 kb on + strand, within EX31_RS13690at 178.775 kb on + strand, within EX31_RS13690at 178.833 kb on - strand, within EX31_RS13690at 178.835 kb on + strand, within EX31_RS13690at 178.836 kb on - strand, within EX31_RS13690at 178.846 kb on + strand, within EX31_RS13690at 178.847 kb on - strand, within EX31_RS13690at 178.905 kb on + strandat 178.905 kb on + strandat 179.046 kb on + strandat 179.047 kb on - strandat 179.048 kb on + strandat 179.048 kb on + strandat 179.048 kb on + strandat 179.048 kb on + strandat 179.049 kb on - strandat 179.049 kb on - strandat 179.084 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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177,531 - +0.5
177,540 + -0.3
177,575 - -1.8
177,575 - +0.2
177,576 + -0.9
177,634 + -0.6
177,641 - -0.1
177,643 - +0.2
177,671 + -0.8
177,680 - +0.5
177,689 + -0.3
177,798 + -1.0
177,799 - +0.5
177,809 + -0.4
177,818 + -0.4
177,819 - +0.2
177,821 - +0.2
177,849 + -0.3
177,889 - EX31_RS13690 0.13 -0.4
177,945 - EX31_RS13690 0.17 +0.6
178,011 + EX31_RS13690 0.22 -1.1
178,011 + EX31_RS13690 0.22 -0.1
178,011 + EX31_RS13690 0.22 +0.4
178,012 - EX31_RS13690 0.22 +1.2
178,080 - EX31_RS13690 0.28 +0.7
178,087 + EX31_RS13690 0.28 +0.4
178,088 - EX31_RS13690 0.28 +0.1
178,088 - EX31_RS13690 0.28 +0.6
178,088 - EX31_RS13690 0.28 -1.2
178,103 + EX31_RS13690 0.29 +0.4
178,145 - EX31_RS13690 0.33 -0.9
178,227 + EX31_RS13690 0.39 -0.4
178,227 + EX31_RS13690 0.39 -0.2
178,227 + EX31_RS13690 0.39 -1.6
178,227 + EX31_RS13690 0.39 +0.4
178,227 + EX31_RS13690 0.39 -1.1
178,228 - EX31_RS13690 0.39 -0.1
178,228 - EX31_RS13690 0.39 +0.4
178,241 - EX31_RS13690 0.40 +0.6
178,242 + EX31_RS13690 0.40 -1.3
178,242 + EX31_RS13690 0.40 -0.1
178,242 + EX31_RS13690 0.40 -0.9
178,243 - EX31_RS13690 0.40 -1.2
178,274 + EX31_RS13690 0.42 -0.7
178,274 + EX31_RS13690 0.42 -1.2
178,275 - EX31_RS13690 0.43 -0.6
178,275 - EX31_RS13690 0.43 +0.4
178,285 + EX31_RS13690 0.43 -0.3
178,285 + EX31_RS13690 0.43 -0.7
178,285 + EX31_RS13690 0.43 -0.6
178,285 + EX31_RS13690 0.43 -0.5
178,285 + EX31_RS13690 0.43 -1.3
178,285 + EX31_RS13690 0.43 -0.9
178,285 + EX31_RS13690 0.43 -1.7
178,286 - EX31_RS13690 0.43 -1.0
178,286 - EX31_RS13690 0.43 +0.1
178,286 - EX31_RS13690 0.43 -1.1
178,297 + EX31_RS13690 0.44 -0.0
178,297 + EX31_RS13690 0.44 -2.1
178,297 + EX31_RS13690 0.44 +1.2
178,298 - EX31_RS13690 0.44 -0.1
178,333 + EX31_RS13690 0.47 +0.1
178,333 + EX31_RS13690 0.47 -1.1
178,463 + EX31_RS13690 0.57 +0.1
178,476 - EX31_RS13690 0.58 -0.9
178,476 - EX31_RS13690 0.58 -0.5
178,497 - EX31_RS13690 0.60 +0.0
178,497 - EX31_RS13690 0.60 -0.1
178,500 - EX31_RS13690 0.60 -0.2
178,500 - EX31_RS13690 0.60 -0.3
178,525 - EX31_RS13690 0.62 -0.7
178,576 + EX31_RS13690 0.66 -1.7
178,576 + EX31_RS13690 0.66 +0.4
178,578 + EX31_RS13690 0.66 -0.3
178,578 + EX31_RS13690 0.66 -0.8
178,578 + EX31_RS13690 0.66 -0.3
178,578 + EX31_RS13690 0.66 +0.8
178,578 + EX31_RS13690 0.66 -1.0
178,578 + EX31_RS13690 0.66 +0.2
178,578 + EX31_RS13690 0.66 +0.6
178,578 + EX31_RS13690 0.66 -0.7
178,579 - EX31_RS13690 0.66 -0.5
178,579 - EX31_RS13690 0.66 +0.5
178,579 - EX31_RS13690 0.66 +1.0
178,579 - EX31_RS13690 0.66 -0.0
178,579 - EX31_RS13690 0.66 +0.3
178,643 + EX31_RS13690 0.71 -0.4
178,644 - EX31_RS13690 0.71 -0.1
178,665 - EX31_RS13690 0.73 -0.8
178,674 + EX31_RS13690 0.73 -0.6
178,775 + EX31_RS13690 0.81 -0.3
178,833 - EX31_RS13690 0.86 -0.9
178,835 + EX31_RS13690 0.86 -0.0
178,836 - EX31_RS13690 0.86 +0.6
178,846 + EX31_RS13690 0.87 -0.7
178,847 - EX31_RS13690 0.87 -0.9
178,905 + -0.5
178,905 + -0.4
179,046 + -1.1
179,047 - -1.2
179,048 + -0.8
179,048 + +0.1
179,048 + -0.6
179,048 + -1.7
179,049 - -0.1
179,049 - +0.6
179,084 + -0.2

Or see this region's nucleotide sequence