Strain Fitness in Rahnella sp. WP5 around EX31_RS12030

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12025 and EX31_RS12030 are separated by 37 nucleotidesEX31_RS12030 and EX31_RS12035 are separated by 54 nucleotides EX31_RS12025: EX31_RS12025 - hypothetical protein, at 70,429 to 72,015 _RS12025 EX31_RS12030: EX31_RS12030 - hypothetical protein, at 72,053 to 72,538 _RS12030 EX31_RS12035: EX31_RS12035 - LysR family transcriptional regulator, at 72,593 to 73,495 _RS12035 Position (kb) 72 73Strain fitness (log2 ratio) -2 -1 0 1at 71.062 kb on - strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.087 kb on + strand, within EX31_RS12025at 71.088 kb on - strand, within EX31_RS12025at 71.088 kb on - strand, within EX31_RS12025at 71.088 kb on - strand, within EX31_RS12025at 71.088 kb on - strand, within EX31_RS12025at 71.088 kb on - strand, within EX31_RS12025at 71.088 kb on - strand, within EX31_RS12025at 71.088 kb on - strand, within EX31_RS12025at 71.088 kb on - strand, within EX31_RS12025at 71.088 kb on - strand, within EX31_RS12025at 71.088 kb on - strand, within EX31_RS12025at 71.088 kb on - strand, within EX31_RS12025at 71.112 kb on + strand, within EX31_RS12025at 71.257 kb on + strand, within EX31_RS12025at 71.257 kb on + strand, within EX31_RS12025at 71.258 kb on - strand, within EX31_RS12025at 71.292 kb on + strand, within EX31_RS12025at 71.292 kb on + strand, within EX31_RS12025at 71.292 kb on + strand, within EX31_RS12025at 71.293 kb on - strand, within EX31_RS12025at 71.334 kb on + strand, within EX31_RS12025at 71.353 kb on + strand, within EX31_RS12025at 71.353 kb on + strand, within EX31_RS12025at 71.353 kb on + strand, within EX31_RS12025at 71.354 kb on - strand, within EX31_RS12025at 71.354 kb on - strand, within EX31_RS12025at 71.374 kb on + strand, within EX31_RS12025at 71.374 kb on + strand, within EX31_RS12025at 71.374 kb on + strand, within EX31_RS12025at 71.375 kb on - strand, within EX31_RS12025at 71.375 kb on - strand, within EX31_RS12025at 71.377 kb on - strand, within EX31_RS12025at 71.377 kb on - strand, within EX31_RS12025at 71.517 kb on + strand, within EX31_RS12025at 71.517 kb on + strand, within EX31_RS12025at 71.517 kb on + strand, within EX31_RS12025at 71.517 kb on + strand, within EX31_RS12025at 71.518 kb on - strand, within EX31_RS12025at 71.518 kb on - strand, within EX31_RS12025at 71.527 kb on + strand, within EX31_RS12025at 71.528 kb on - strand, within EX31_RS12025at 71.528 kb on - strand, within EX31_RS12025at 71.617 kb on + strand, within EX31_RS12025at 71.618 kb on - strand, within EX31_RS12025at 71.689 kb on + strand, within EX31_RS12025at 71.731 kb on + strand, within EX31_RS12025at 71.790 kb on + strand, within EX31_RS12025at 71.790 kb on + strand, within EX31_RS12025at 71.790 kb on + strand, within EX31_RS12025at 71.790 kb on + strand, within EX31_RS12025at 71.791 kb on - strand, within EX31_RS12025at 71.791 kb on - strand, within EX31_RS12025at 71.800 kb on + strand, within EX31_RS12025at 71.800 kb on + strand, within EX31_RS12025at 71.800 kb on + strand, within EX31_RS12025at 71.801 kb on - strand, within EX31_RS12025at 71.801 kb on - strand, within EX31_RS12025at 71.801 kb on - strand, within EX31_RS12025at 71.895 kb on + strandat 71.924 kb on - strandat 71.963 kb on + strandat 71.963 kb on + strandat 71.963 kb on + strandat 71.964 kb on - strandat 71.964 kb on - strandat 71.964 kb on - strandat 71.964 kb on - strandat 72.008 kb on + strandat 72.009 kb on - strandat 72.013 kb on + strandat 72.013 kb on + strandat 72.014 kb on - strandat 72.014 kb on - strandat 72.014 kb on - strandat 72.014 kb on - strandat 72.014 kb on - strandat 72.014 kb on - strandat 72.014 kb on - strandat 72.014 kb on - strandat 72.014 kb on - strandat 72.014 kb on - strandat 72.017 kb on + strandat 72.017 kb on + strandat 72.017 kb on + strandat 72.017 kb on + strandat 72.018 kb on - strandat 72.047 kb on + strandat 72.054 kb on + strandat 72.054 kb on + strandat 72.054 kb on + strandat 72.054 kb on + strandat 72.054 kb on + strandat 72.054 kb on + strandat 72.055 kb on - strandat 72.055 kb on - strandat 72.055 kb on - strandat 72.055 kb on - strandat 72.055 kb on - strandat 72.055 kb on - strandat 72.109 kb on + strand, within EX31_RS12030at 72.161 kb on - strand, within EX31_RS12030at 72.313 kb on + strand, within EX31_RS12030at 72.461 kb on - strand, within EX31_RS12030at 72.479 kb on - strand, within EX31_RS12030at 72.487 kb on + strand, within EX31_RS12030at 72.521 kb on + strandat 72.521 kb on + strandat 72.521 kb on + strandat 72.521 kb on + strandat 72.522 kb on - strandat 72.522 kb on - strandat 72.522 kb on - strandat 72.522 kb on - strandat 72.522 kb on - strandat 72.522 kb on - strandat 72.522 kb on - strandat 72.556 kb on - strandat 72.556 kb on - strandat 72.592 kb on - strandat 72.643 kb on + strandat 72.676 kb on + strandat 72.788 kb on - strand, within EX31_RS12035at 72.990 kb on + strand, within EX31_RS12035at 72.991 kb on - strand, within EX31_RS12035at 72.991 kb on - strand, within EX31_RS12035at 72.991 kb on - strand, within EX31_RS12035at 73.131 kb on + strand, within EX31_RS12035at 73.132 kb on - strand, within EX31_RS12035at 73.132 kb on - strand, within EX31_RS12035at 73.132 kb on - strand, within EX31_RS12035at 73.132 kb on - strand, within EX31_RS12035at 73.132 kb on - strand, within EX31_RS12035at 73.132 kb on - strand, within EX31_RS12035at 73.224 kb on - strand, within EX31_RS12035at 73.282 kb on + strand, within EX31_RS12035at 73.283 kb on - strand, within EX31_RS12035at 73.298 kb on + strand, within EX31_RS12035at 73.299 kb on + strand, within EX31_RS12035at 73.299 kb on + strand, within EX31_RS12035at 73.299 kb on + strand, within EX31_RS12035at 73.302 kb on + strand, within EX31_RS12035at 73.302 kb on + strand, within EX31_RS12035at 73.302 kb on + strand, within EX31_RS12035at 73.303 kb on - strand, within EX31_RS12035at 73.303 kb on - strand, within EX31_RS12035at 73.342 kb on + strand, within EX31_RS12035at 73.384 kb on + strand, within EX31_RS12035at 73.384 kb on + strand, within EX31_RS12035at 73.384 kb on + strand, within EX31_RS12035at 73.385 kb on - strand, within EX31_RS12035at 73.385 kb on - strand, within EX31_RS12035at 73.469 kb on + strandat 73.470 kb on - strandat 73.470 kb on - strandat 73.470 kb on - strandat 73.489 kb on + strandat 73.489 kb on + strandat 73.489 kb on + strandat 73.489 kb on + strandat 73.490 kb on - strandat 73.490 kb on - strandat 73.532 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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71,062 - EX31_RS12025 0.40 -0.7
71,087 + EX31_RS12025 0.41 -1.7
71,087 + EX31_RS12025 0.41 +0.4
71,087 + EX31_RS12025 0.41 -0.9
71,087 + EX31_RS12025 0.41 -1.1
71,087 + EX31_RS12025 0.41 +0.2
71,087 + EX31_RS12025 0.41 +0.0
71,087 + EX31_RS12025 0.41 +1.2
71,087 + EX31_RS12025 0.41 -0.6
71,087 + EX31_RS12025 0.41 +0.1
71,087 + EX31_RS12025 0.41 +0.1
71,087 + EX31_RS12025 0.41 -0.2
71,087 + EX31_RS12025 0.41 +0.3
71,087 + EX31_RS12025 0.41 -1.9
71,087 + EX31_RS12025 0.41 +0.4
71,087 + EX31_RS12025 0.41 +0.1
71,087 + EX31_RS12025 0.41 -0.1
71,087 + EX31_RS12025 0.41 +0.4
71,087 + EX31_RS12025 0.41 +0.1
71,087 + EX31_RS12025 0.41 -0.1
71,087 + EX31_RS12025 0.41 -0.2
71,087 + EX31_RS12025 0.41 +0.4
71,087 + EX31_RS12025 0.41 -0.5
71,088 - EX31_RS12025 0.42 -0.5
71,088 - EX31_RS12025 0.42 +0.3
71,088 - EX31_RS12025 0.42 -0.7
71,088 - EX31_RS12025 0.42 +0.6
71,088 - EX31_RS12025 0.42 -0.4
71,088 - EX31_RS12025 0.42 +0.1
71,088 - EX31_RS12025 0.42 -0.4
71,088 - EX31_RS12025 0.42 -1.2
71,088 - EX31_RS12025 0.42 -0.9
71,088 - EX31_RS12025 0.42 -0.4
71,088 - EX31_RS12025 0.42 -0.4
71,112 + EX31_RS12025 0.43 -2.2
71,257 + EX31_RS12025 0.52 -0.3
71,257 + EX31_RS12025 0.52 +0.4
71,258 - EX31_RS12025 0.52 -1.9
71,292 + EX31_RS12025 0.54 -0.8
71,292 + EX31_RS12025 0.54 -1.2
71,292 + EX31_RS12025 0.54 +0.4
71,293 - EX31_RS12025 0.54 +0.5
71,334 + EX31_RS12025 0.57 -0.5
71,353 + EX31_RS12025 0.58 +0.3
71,353 + EX31_RS12025 0.58 -0.6
71,353 + EX31_RS12025 0.58 +0.3
71,354 - EX31_RS12025 0.58 +0.6
71,354 - EX31_RS12025 0.58 +0.4
71,374 + EX31_RS12025 0.60 -0.5
71,374 + EX31_RS12025 0.60 -1.1
71,374 + EX31_RS12025 0.60 +0.7
71,375 - EX31_RS12025 0.60 -0.2
71,375 - EX31_RS12025 0.60 +0.8
71,377 - EX31_RS12025 0.60 +0.2
71,377 - EX31_RS12025 0.60 -1.6
71,517 + EX31_RS12025 0.69 -0.7
71,517 + EX31_RS12025 0.69 -0.0
71,517 + EX31_RS12025 0.69 +0.7
71,517 + EX31_RS12025 0.69 +0.3
71,518 - EX31_RS12025 0.69 +0.6
71,518 - EX31_RS12025 0.69 +0.2
71,527 + EX31_RS12025 0.69 -1.0
71,528 - EX31_RS12025 0.69 +0.0
71,528 - EX31_RS12025 0.69 -0.0
71,617 + EX31_RS12025 0.75 -0.0
71,618 - EX31_RS12025 0.75 -0.4
71,689 + EX31_RS12025 0.79 +0.4
71,731 + EX31_RS12025 0.82 +0.4
71,790 + EX31_RS12025 0.86 -1.0
71,790 + EX31_RS12025 0.86 -0.3
71,790 + EX31_RS12025 0.86 +0.9
71,790 + EX31_RS12025 0.86 +0.3
71,791 - EX31_RS12025 0.86 -0.2
71,791 - EX31_RS12025 0.86 -0.4
71,800 + EX31_RS12025 0.86 -0.6
71,800 + EX31_RS12025 0.86 +0.1
71,800 + EX31_RS12025 0.86 -0.3
71,801 - EX31_RS12025 0.86 -0.3
71,801 - EX31_RS12025 0.86 +0.4
71,801 - EX31_RS12025 0.86 -1.1
71,895 + +1.6
71,924 - +0.9
71,963 + +0.3
71,963 + +0.3
71,963 + +1.0
71,964 - -0.6
71,964 - -0.3
71,964 - -0.1
71,964 - -0.2
72,008 + +0.2
72,009 - +0.8
72,013 + +0.3
72,013 + +0.6
72,014 - +0.3
72,014 - +0.8
72,014 - -0.8
72,014 - -0.6
72,014 - +0.4
72,014 - -0.7
72,014 - -0.7
72,014 - +0.5
72,014 - -0.2
72,014 - -0.6
72,017 + +0.0
72,017 + +0.0
72,017 + +0.4
72,017 + -0.4
72,018 - -0.6
72,047 + -0.6
72,054 + -0.6
72,054 + -0.1
72,054 + -0.6
72,054 + +0.4
72,054 + -0.9
72,054 + -0.4
72,055 - +0.2
72,055 - +0.1
72,055 - +0.0
72,055 - +0.4
72,055 - +0.3
72,055 - +0.0
72,109 + EX31_RS12030 0.12 +0.5
72,161 - EX31_RS12030 0.22 -0.0
72,313 + EX31_RS12030 0.53 -0.2
72,461 - EX31_RS12030 0.84 +0.1
72,479 - EX31_RS12030 0.88 +1.6
72,487 + EX31_RS12030 0.89 -0.2
72,521 + +0.7
72,521 + +0.8
72,521 + +0.0
72,521 + -0.9
72,522 - +0.0
72,522 - +0.6
72,522 - -1.4
72,522 - +0.1
72,522 - +0.5
72,522 - -0.2
72,522 - +0.5
72,556 - -0.5
72,556 - +0.2
72,592 - -0.4
72,643 + +0.9
72,676 + -1.3
72,788 - EX31_RS12035 0.22 +0.2
72,990 + EX31_RS12035 0.44 +0.1
72,991 - EX31_RS12035 0.44 +0.4
72,991 - EX31_RS12035 0.44 -0.2
72,991 - EX31_RS12035 0.44 +0.6
73,131 + EX31_RS12035 0.60 +0.2
73,132 - EX31_RS12035 0.60 -0.4
73,132 - EX31_RS12035 0.60 +0.2
73,132 - EX31_RS12035 0.60 -0.7
73,132 - EX31_RS12035 0.60 -0.6
73,132 - EX31_RS12035 0.60 +0.3
73,132 - EX31_RS12035 0.60 +0.4
73,224 - EX31_RS12035 0.70 +0.1
73,282 + EX31_RS12035 0.76 -0.2
73,283 - EX31_RS12035 0.76 +0.6
73,298 + EX31_RS12035 0.78 -0.3
73,299 + EX31_RS12035 0.78 +0.7
73,299 + EX31_RS12035 0.78 +0.6
73,299 + EX31_RS12035 0.78 -0.2
73,302 + EX31_RS12035 0.79 +0.1
73,302 + EX31_RS12035 0.79 -0.8
73,302 + EX31_RS12035 0.79 -1.1
73,303 - EX31_RS12035 0.79 +0.8
73,303 - EX31_RS12035 0.79 -0.0
73,342 + EX31_RS12035 0.83 -0.2
73,384 + EX31_RS12035 0.88 -0.5
73,384 + EX31_RS12035 0.88 -0.2
73,384 + EX31_RS12035 0.88 +0.5
73,385 - EX31_RS12035 0.88 -0.1
73,385 - EX31_RS12035 0.88 +0.4
73,469 + +0.3
73,470 - +0.1
73,470 - -0.0
73,470 - +0.0
73,489 + +0.2
73,489 + +0.8
73,489 + -0.0
73,489 + +0.7
73,490 - -0.3
73,490 - +0.2
73,532 + -0.6

Or see this region's nucleotide sequence