Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09280 and EX31_RS09285 are separated by 105 nucleotides EX31_RS09285 and EX31_RS09290 are separated by 14 nucleotides EX31_RS09290 and EX31_RS09295 are separated by 266 nucleotides
EX31_RS09280: EX31_RS09280 - ABC transporter ATP-binding protein, at 56,806 to 58,518
_RS09280
EX31_RS09285: EX31_RS09285 - hypothetical protein, at 58,624 to 58,929
_RS09285
EX31_RS09290: EX31_RS09290 - hypothetical protein, at 58,944 to 59,468
_RS09290
EX31_RS09295: EX31_RS09295 - D-amino-acid transaminase, at 59,735 to 60,598
_RS09295
Position (kb) 58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 57.711 kb on - strand, within EX31_RS09280 at 57.735 kb on - strand, within EX31_RS09280 at 57.785 kb on + strand, within EX31_RS09280 at 57.786 kb on - strand, within EX31_RS09280 at 57.818 kb on + strand, within EX31_RS09280 at 57.931 kb on + strand, within EX31_RS09280 at 57.932 kb on - strand, within EX31_RS09280 at 57.933 kb on + strand, within EX31_RS09280 at 57.933 kb on + strand, within EX31_RS09280 at 57.933 kb on + strand, within EX31_RS09280 at 57.934 kb on - strand, within EX31_RS09280 at 57.934 kb on - strand, within EX31_RS09280 at 57.999 kb on - strand, within EX31_RS09280 at 58.033 kb on - strand, within EX31_RS09280 at 58.110 kb on + strand, within EX31_RS09280 at 58.114 kb on + strand, within EX31_RS09280 at 58.114 kb on + strand, within EX31_RS09280 at 58.114 kb on + strand, within EX31_RS09280 at 58.114 kb on + strand, within EX31_RS09280 at 58.114 kb on + strand, within EX31_RS09280 at 58.114 kb on + strand, within EX31_RS09280 at 58.114 kb on + strand, within EX31_RS09280 at 58.115 kb on - strand, within EX31_RS09280 at 58.115 kb on - strand, within EX31_RS09280 at 58.292 kb on + strand, within EX31_RS09280 at 58.292 kb on + strand, within EX31_RS09280 at 58.293 kb on - strand, within EX31_RS09280 at 58.293 kb on - strand, within EX31_RS09280 at 58.328 kb on + strand, within EX31_RS09280 at 58.483 kb on - strand at 58.494 kb on - strand at 58.496 kb on + strand at 58.709 kb on + strand, within EX31_RS09285 at 58.710 kb on - strand, within EX31_RS09285 at 58.710 kb on - strand, within EX31_RS09285 at 58.710 kb on - strand, within EX31_RS09285 at 58.710 kb on - strand, within EX31_RS09285 at 58.820 kb on - strand, within EX31_RS09285 at 58.987 kb on + strand at 59.042 kb on - strand, within EX31_RS09290 at 59.042 kb on - strand, within EX31_RS09290 at 59.099 kb on + strand, within EX31_RS09290 at 59.142 kb on - strand, within EX31_RS09290 at 59.376 kb on - strand, within EX31_RS09290 at 59.393 kb on - strand, within EX31_RS09290 at 59.432 kb on + strand at 59.432 kb on + strand at 59.505 kb on + strand at 59.606 kb on - strand at 59.732 kb on + strand at 59.733 kb on - strand at 59.737 kb on - strand at 59.769 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 57,711 - EX31_RS09280 0.53 -0.1 57,735 - EX31_RS09280 0.54 -1.8 57,785 + EX31_RS09280 0.57 -0.8 57,786 - EX31_RS09280 0.57 +0.4 57,818 + EX31_RS09280 0.59 -0.1 57,931 + EX31_RS09280 0.66 -0.2 57,932 - EX31_RS09280 0.66 +0.4 57,933 + EX31_RS09280 0.66 -1.1 57,933 + EX31_RS09280 0.66 -0.3 57,933 + EX31_RS09280 0.66 +0.7 57,934 - EX31_RS09280 0.66 -0.0 57,934 - EX31_RS09280 0.66 -1.6 57,999 - EX31_RS09280 0.70 -0.8 58,033 - EX31_RS09280 0.72 +0.3 58,110 + EX31_RS09280 0.76 +1.1 58,114 + EX31_RS09280 0.76 -0.5 58,114 + EX31_RS09280 0.76 +1.0 58,114 + EX31_RS09280 0.76 +0.0 58,114 + EX31_RS09280 0.76 +0.5 58,114 + EX31_RS09280 0.76 +1.1 58,114 + EX31_RS09280 0.76 -0.7 58,114 + EX31_RS09280 0.76 -0.4 58,115 - EX31_RS09280 0.76 -0.3 58,115 - EX31_RS09280 0.76 -0.4 58,292 + EX31_RS09280 0.87 -1.8 58,292 + EX31_RS09280 0.87 +0.2 58,293 - EX31_RS09280 0.87 +0.4 58,293 - EX31_RS09280 0.87 -0.2 58,328 + EX31_RS09280 0.89 -0.2 58,483 - +0.8 58,494 - -0.5 58,496 + +0.2 58,709 + EX31_RS09285 0.28 +0.8 58,710 - EX31_RS09285 0.28 +0.9 58,710 - EX31_RS09285 0.28 -0.8 58,710 - EX31_RS09285 0.28 +0.1 58,710 - EX31_RS09285 0.28 -0.9 58,820 - EX31_RS09285 0.64 +1.3 58,987 + +0.8 59,042 - EX31_RS09290 0.19 -0.6 59,042 - EX31_RS09290 0.19 -0.3 59,099 + EX31_RS09290 0.30 +2.1 59,142 - EX31_RS09290 0.38 +0.4 59,376 - EX31_RS09290 0.82 -0.8 59,393 - EX31_RS09290 0.86 +0.1 59,432 + +0.2 59,432 + +0.7 59,505 + +0.1 59,606 - -1.0 59,732 + -0.4 59,733 - -0.8 59,737 - -0.2 59,769 + +0.9
Or see this region's nucleotide sequence