Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10420 and EX31_RS10425 are separated by 239 nucleotides EX31_RS10425 and EX31_RS10430 are separated by 3 nucleotides EX31_RS10430 and EX31_RS10435 overlap by 4 nucleotides
EX31_RS10420: EX31_RS10420 - DMT family transporter, at 294,974 to 295,894
_RS10420
EX31_RS10425: EX31_RS10425 - transporter substrate-binding domain-containing protein, at 296,134 to 296,973
_RS10425
EX31_RS10430: EX31_RS10430 - 5-oxoprolinase subunit PxpB, at 296,977 to 297,687
_RS10430
EX31_RS10435: EX31_RS10435 - biotin-dependent carboxyltransferase family protein, at 297,684 to 298,685
_RS10435
Position (kb) 296
297 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 295.137 kb on + strand, within EX31_RS10420 at 295.137 kb on + strand, within EX31_RS10420 at 295.138 kb on - strand, within EX31_RS10420 at 295.138 kb on - strand, within EX31_RS10420 at 295.193 kb on + strand, within EX31_RS10420 at 295.194 kb on - strand, within EX31_RS10420 at 295.250 kb on - strand, within EX31_RS10420 at 295.315 kb on - strand, within EX31_RS10420 at 295.349 kb on + strand, within EX31_RS10420 at 295.373 kb on + strand, within EX31_RS10420 at 295.382 kb on - strand, within EX31_RS10420 at 295.576 kb on + strand, within EX31_RS10420 at 295.577 kb on - strand, within EX31_RS10420 at 295.593 kb on + strand, within EX31_RS10420 at 295.594 kb on - strand, within EX31_RS10420 at 295.624 kb on + strand, within EX31_RS10420 at 295.625 kb on - strand, within EX31_RS10420 at 295.625 kb on - strand, within EX31_RS10420 at 295.626 kb on + strand, within EX31_RS10420 at 295.626 kb on + strand, within EX31_RS10420 at 295.626 kb on + strand, within EX31_RS10420 at 295.626 kb on + strand, within EX31_RS10420 at 295.627 kb on - strand, within EX31_RS10420 at 295.627 kb on - strand, within EX31_RS10420 at 295.627 kb on - strand, within EX31_RS10420 at 295.627 kb on - strand, within EX31_RS10420 at 295.642 kb on - strand, within EX31_RS10420 at 295.645 kb on + strand, within EX31_RS10420 at 295.650 kb on + strand, within EX31_RS10420 at 295.650 kb on + strand, within EX31_RS10420 at 295.650 kb on + strand, within EX31_RS10420 at 295.651 kb on - strand, within EX31_RS10420 at 295.651 kb on - strand, within EX31_RS10420 at 295.695 kb on - strand, within EX31_RS10420 at 295.696 kb on + strand, within EX31_RS10420 at 295.697 kb on - strand, within EX31_RS10420 at 295.802 kb on + strand, within EX31_RS10420 at 295.802 kb on + strand, within EX31_RS10420 at 295.802 kb on + strand, within EX31_RS10420 at 295.803 kb on - strand at 295.804 kb on + strand at 295.804 kb on + strand at 295.839 kb on - strand at 295.859 kb on + strand at 295.895 kb on + strand at 295.939 kb on + strand at 295.970 kb on + strand at 295.989 kb on + strand at 295.998 kb on + strand at 295.999 kb on - strand at 295.999 kb on - strand at 296.005 kb on + strand at 296.007 kb on + strand at 296.008 kb on - strand at 296.026 kb on + strand at 296.026 kb on + strand at 296.026 kb on + strand at 296.026 kb on + strand at 296.026 kb on + strand at 296.026 kb on + strand at 296.026 kb on + strand at 296.026 kb on + strand at 296.026 kb on + strand at 296.026 kb on + strand at 296.026 kb on + strand at 296.026 kb on + strand at 296.026 kb on + strand at 296.026 kb on + strand at 296.026 kb on + strand at 296.027 kb on - strand at 296.027 kb on - strand at 296.027 kb on - strand at 296.027 kb on - strand at 296.027 kb on - strand at 296.027 kb on - strand at 296.027 kb on - strand at 296.028 kb on + strand at 296.028 kb on + strand at 296.028 kb on + strand at 296.028 kb on + strand at 296.028 kb on + strand at 296.028 kb on + strand at 296.029 kb on - strand at 296.029 kb on - strand at 296.029 kb on - strand at 296.029 kb on - strand at 296.029 kb on - strand at 296.030 kb on + strand at 296.030 kb on + strand at 296.030 kb on + strand at 296.031 kb on - strand at 296.031 kb on - strand at 296.046 kb on + strand at 296.107 kb on + strand at 296.108 kb on - strand at 296.147 kb on + strand at 296.148 kb on - strand at 296.324 kb on + strand, within EX31_RS10425 at 296.379 kb on + strand, within EX31_RS10425 at 296.391 kb on + strand, within EX31_RS10425 at 296.443 kb on + strand, within EX31_RS10425 at 296.443 kb on + strand, within EX31_RS10425 at 296.485 kb on + strand, within EX31_RS10425 at 296.488 kb on + strand, within EX31_RS10425 at 296.488 kb on + strand, within EX31_RS10425 at 296.489 kb on - strand, within EX31_RS10425 at 296.489 kb on - strand, within EX31_RS10425 at 296.489 kb on - strand, within EX31_RS10425 at 296.504 kb on + strand, within EX31_RS10425 at 296.551 kb on - strand, within EX31_RS10425 at 296.603 kb on - strand, within EX31_RS10425 at 296.603 kb on - strand, within EX31_RS10425 at 296.872 kb on - strand, within EX31_RS10425 at 296.933 kb on + strand at 296.933 kb on + strand at 296.934 kb on - strand at 296.934 kb on - strand at 296.934 kb on - strand at 296.934 kb on - strand at 296.934 kb on - strand at 297.018 kb on + strand at 297.406 kb on + strand, within EX31_RS10430 at 297.406 kb on + strand, within EX31_RS10430 at 297.406 kb on + strand, within EX31_RS10430 at 297.446 kb on - strand, within EX31_RS10430 at 297.446 kb on - strand, within EX31_RS10430 at 297.504 kb on + strand, within EX31_RS10430 at 297.504 kb on + strand, within EX31_RS10430 at 297.505 kb on - strand, within EX31_RS10430 at 297.505 kb on - strand, within EX31_RS10430 at 297.505 kb on - strand, within EX31_RS10430 at 297.731 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 295,137 + EX31_RS10420 0.18 -1.0 295,137 + EX31_RS10420 0.18 -1.3 295,138 - EX31_RS10420 0.18 -0.1 295,138 - EX31_RS10420 0.18 -0.2 295,193 + EX31_RS10420 0.24 -0.0 295,194 - EX31_RS10420 0.24 -0.2 295,250 - EX31_RS10420 0.30 +0.4 295,315 - EX31_RS10420 0.37 +0.1 295,349 + EX31_RS10420 0.41 -1.6 295,373 + EX31_RS10420 0.43 -0.4 295,382 - EX31_RS10420 0.44 +1.6 295,576 + EX31_RS10420 0.65 -0.5 295,577 - EX31_RS10420 0.65 +0.1 295,593 + EX31_RS10420 0.67 -1.0 295,594 - EX31_RS10420 0.67 +2.8 295,624 + EX31_RS10420 0.71 -0.2 295,625 - EX31_RS10420 0.71 +0.8 295,625 - EX31_RS10420 0.71 +0.4 295,626 + EX31_RS10420 0.71 -0.9 295,626 + EX31_RS10420 0.71 +0.4 295,626 + EX31_RS10420 0.71 +0.8 295,626 + EX31_RS10420 0.71 +0.1 295,627 - EX31_RS10420 0.71 +1.1 295,627 - EX31_RS10420 0.71 -0.6 295,627 - EX31_RS10420 0.71 +0.5 295,627 - EX31_RS10420 0.71 +0.4 295,642 - EX31_RS10420 0.73 -0.4 295,645 + EX31_RS10420 0.73 -0.0 295,650 + EX31_RS10420 0.73 -2.0 295,650 + EX31_RS10420 0.73 -0.8 295,650 + EX31_RS10420 0.73 -0.6 295,651 - EX31_RS10420 0.74 +0.2 295,651 - EX31_RS10420 0.74 +0.8 295,695 - EX31_RS10420 0.78 +0.7 295,696 + EX31_RS10420 0.78 -0.6 295,697 - EX31_RS10420 0.79 -0.9 295,802 + EX31_RS10420 0.90 -1.6 295,802 + EX31_RS10420 0.90 +0.1 295,802 + EX31_RS10420 0.90 +1.2 295,803 - -1.1 295,804 + -0.1 295,804 + +0.8 295,839 - -0.4 295,859 + -2.1 295,895 + -0.6 295,939 + -0.6 295,970 + -0.8 295,989 + +0.5 295,998 + -0.7 295,999 - +1.0 295,999 - +1.4 296,005 + -1.3 296,007 + +0.3 296,008 - -0.0 296,026 + +1.1 296,026 + +1.8 296,026 + +0.6 296,026 + -0.3 296,026 + +0.7 296,026 + +0.6 296,026 + -0.1 296,026 + +0.2 296,026 + +1.0 296,026 + +0.5 296,026 + +1.0 296,026 + +1.0 296,026 + -1.3 296,026 + +0.8 296,026 + +0.3 296,027 - +0.1 296,027 - -1.2 296,027 - -1.7 296,027 - -0.5 296,027 - -0.9 296,027 - +0.6 296,027 - +0.3 296,028 + +0.1 296,028 + +1.0 296,028 + +0.6 296,028 + -0.6 296,028 + +0.4 296,028 + +0.3 296,029 - -0.4 296,029 - -1.2 296,029 - +0.2 296,029 - -0.4 296,029 - -0.2 296,030 + +0.3 296,030 + -0.6 296,030 + -0.5 296,031 - +0.7 296,031 - -0.6 296,046 + -0.9 296,107 + +0.3 296,108 - +0.5 296,147 + -1.7 296,148 - -1.1 296,324 + EX31_RS10425 0.23 -1.0 296,379 + EX31_RS10425 0.29 -0.5 296,391 + EX31_RS10425 0.31 -0.6 296,443 + EX31_RS10425 0.37 -0.3 296,443 + EX31_RS10425 0.37 -1.5 296,485 + EX31_RS10425 0.42 -0.5 296,488 + EX31_RS10425 0.42 -0.1 296,488 + EX31_RS10425 0.42 -0.8 296,489 - EX31_RS10425 0.42 +0.2 296,489 - EX31_RS10425 0.42 -0.7 296,489 - EX31_RS10425 0.42 +1.0 296,504 + EX31_RS10425 0.44 +0.3 296,551 - EX31_RS10425 0.50 +0.9 296,603 - EX31_RS10425 0.56 -0.1 296,603 - EX31_RS10425 0.56 -0.1 296,872 - EX31_RS10425 0.88 -1.1 296,933 + -0.4 296,933 + +0.4 296,934 - -2.9 296,934 - -0.1 296,934 - -2.2 296,934 - -0.7 296,934 - +0.9 297,018 + -1.4 297,406 + EX31_RS10430 0.60 -0.6 297,406 + EX31_RS10430 0.60 +1.5 297,406 + EX31_RS10430 0.60 -0.5 297,446 - EX31_RS10430 0.66 -0.3 297,446 - EX31_RS10430 0.66 -1.2 297,504 + EX31_RS10430 0.74 -0.1 297,504 + EX31_RS10430 0.74 -0.7 297,505 - EX31_RS10430 0.74 -0.7 297,505 - EX31_RS10430 0.74 -0.8 297,505 - EX31_RS10430 0.74 -0.8 297,731 + +0.4
Or see this region's nucleotide sequence