Strain Fitness in Rahnella sp. WP5 around EX31_RS02090

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02085 and EX31_RS02090 are separated by 63 nucleotidesEX31_RS02090 and EX31_RS02095 are separated by 26 nucleotides EX31_RS02085: EX31_RS02085 - SDR family oxidoreductase, at 457,588 to 458,328 _RS02085 EX31_RS02090: EX31_RS02090 - fumarylacetoacetate hydrolase family protein, at 458,392 to 459,234 _RS02090 EX31_RS02095: EX31_RS02095 - L-fuconate dehydratase, at 459,261 to 460,538 _RS02095 Position (kb) 458 459 460Strain fitness (log2 ratio) -2 -1 0 1 2at 457.439 kb on + strandat 457.440 kb on - strandat 457.519 kb on + strandat 457.583 kb on + strandat 457.583 kb on + strandat 457.583 kb on + strandat 457.583 kb on + strandat 457.583 kb on + strandat 457.583 kb on + strandat 457.583 kb on + strandat 457.583 kb on + strandat 457.584 kb on - strandat 457.584 kb on - strandat 457.584 kb on - strandat 457.584 kb on - strandat 457.584 kb on - strandat 457.584 kb on - strandat 457.584 kb on - strandat 457.584 kb on - strandat 457.584 kb on - strandat 457.584 kb on - strandat 457.584 kb on - strandat 457.587 kb on + strandat 457.588 kb on - strandat 457.712 kb on + strand, within EX31_RS02085at 457.712 kb on + strand, within EX31_RS02085at 457.713 kb on - strand, within EX31_RS02085at 457.713 kb on - strand, within EX31_RS02085at 457.713 kb on - strand, within EX31_RS02085at 457.720 kb on - strand, within EX31_RS02085at 457.888 kb on - strand, within EX31_RS02085at 458.014 kb on + strand, within EX31_RS02085at 458.015 kb on - strand, within EX31_RS02085at 458.068 kb on + strand, within EX31_RS02085at 458.069 kb on - strand, within EX31_RS02085at 458.185 kb on + strand, within EX31_RS02085at 458.185 kb on + strand, within EX31_RS02085at 458.257 kb on + strandat 458.258 kb on - strandat 458.281 kb on + strandat 458.281 kb on + strandat 458.281 kb on + strandat 458.282 kb on - strandat 458.282 kb on - strandat 458.282 kb on - strandat 458.304 kb on + strandat 458.402 kb on + strandat 458.403 kb on - strandat 458.478 kb on + strand, within EX31_RS02090at 458.478 kb on + strand, within EX31_RS02090at 458.478 kb on + strand, within EX31_RS02090at 458.478 kb on + strand, within EX31_RS02090at 458.479 kb on - strand, within EX31_RS02090at 458.479 kb on - strand, within EX31_RS02090at 458.479 kb on - strand, within EX31_RS02090at 458.479 kb on - strand, within EX31_RS02090at 458.479 kb on - strand, within EX31_RS02090at 458.616 kb on + strand, within EX31_RS02090at 458.629 kb on + strand, within EX31_RS02090at 458.630 kb on - strand, within EX31_RS02090at 458.630 kb on - strand, within EX31_RS02090at 458.630 kb on - strand, within EX31_RS02090at 458.800 kb on + strand, within EX31_RS02090at 458.802 kb on + strand, within EX31_RS02090at 458.802 kb on + strand, within EX31_RS02090at 458.907 kb on + strand, within EX31_RS02090at 459.028 kb on - strand, within EX31_RS02090at 459.067 kb on + strand, within EX31_RS02090at 459.068 kb on - strand, within EX31_RS02090at 459.246 kb on + strandat 459.246 kb on + strandat 459.366 kb on + strandat 459.366 kb on + strandat 459.366 kb on + strandat 459.366 kb on + strandat 459.366 kb on + strandat 459.367 kb on - strandat 459.367 kb on - strandat 459.376 kb on + strandat 459.376 kb on + strandat 459.625 kb on + strand, within EX31_RS02095at 459.625 kb on + strand, within EX31_RS02095at 459.625 kb on + strand, within EX31_RS02095at 459.811 kb on - strand, within EX31_RS02095at 459.819 kb on + strand, within EX31_RS02095at 459.820 kb on - strand, within EX31_RS02095at 459.871 kb on + strand, within EX31_RS02095at 459.871 kb on + strand, within EX31_RS02095at 459.871 kb on + strand, within EX31_RS02095at 459.872 kb on - strand, within EX31_RS02095at 459.903 kb on + strand, within EX31_RS02095at 460.012 kb on + strand, within EX31_RS02095at 460.073 kb on + strand, within EX31_RS02095at 460.197 kb on - strand, within EX31_RS02095

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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457,439 + +0.7
457,440 - +0.9
457,519 + -0.2
457,583 + -0.3
457,583 + -1.8
457,583 + -0.7
457,583 + +0.2
457,583 + -0.0
457,583 + -0.6
457,583 + -0.9
457,583 + -0.7
457,584 - +0.7
457,584 - -0.5
457,584 - +0.1
457,584 - +2.5
457,584 - +0.1
457,584 - +0.9
457,584 - +1.6
457,584 - -0.1
457,584 - -1.0
457,584 - +0.7
457,584 - -0.3
457,587 + +1.5
457,588 - -0.7
457,712 + EX31_RS02085 0.17 +0.9
457,712 + EX31_RS02085 0.17 -0.8
457,713 - EX31_RS02085 0.17 -1.3
457,713 - EX31_RS02085 0.17 +0.9
457,713 - EX31_RS02085 0.17 -1.3
457,720 - EX31_RS02085 0.18 +0.2
457,888 - EX31_RS02085 0.40 +0.7
458,014 + EX31_RS02085 0.57 -0.3
458,015 - EX31_RS02085 0.58 +0.7
458,068 + EX31_RS02085 0.65 +0.8
458,069 - EX31_RS02085 0.65 +1.6
458,185 + EX31_RS02085 0.81 +0.2
458,185 + EX31_RS02085 0.81 -0.4
458,257 + +0.9
458,258 - -0.7
458,281 + +0.1
458,281 + -0.6
458,281 + -0.3
458,282 - -0.2
458,282 - +0.2
458,282 - +0.6
458,304 + +0.6
458,402 + +0.7
458,403 - +0.5
458,478 + EX31_RS02090 0.10 -0.3
458,478 + EX31_RS02090 0.10 -0.0
458,478 + EX31_RS02090 0.10 +0.6
458,478 + EX31_RS02090 0.10 -0.9
458,479 - EX31_RS02090 0.10 -0.8
458,479 - EX31_RS02090 0.10 +0.9
458,479 - EX31_RS02090 0.10 -1.0
458,479 - EX31_RS02090 0.10 +0.8
458,479 - EX31_RS02090 0.10 +0.7
458,616 + EX31_RS02090 0.27 +0.3
458,629 + EX31_RS02090 0.28 +0.4
458,630 - EX31_RS02090 0.28 +0.1
458,630 - EX31_RS02090 0.28 +0.3
458,630 - EX31_RS02090 0.28 +0.9
458,800 + EX31_RS02090 0.48 +0.6
458,802 + EX31_RS02090 0.49 +0.5
458,802 + EX31_RS02090 0.49 +0.5
458,907 + EX31_RS02090 0.61 +1.4
459,028 - EX31_RS02090 0.75 -1.9
459,067 + EX31_RS02090 0.80 +0.5
459,068 - EX31_RS02090 0.80 +0.2
459,246 + +0.0
459,246 + +0.6
459,366 + +0.1
459,366 + -1.8
459,366 + -0.5
459,366 + +1.0
459,366 + +0.5
459,367 - -1.3
459,367 - +0.6
459,376 + -0.1
459,376 + -1.6
459,625 + EX31_RS02095 0.28 +1.1
459,625 + EX31_RS02095 0.28 +0.2
459,625 + EX31_RS02095 0.28 -0.3
459,811 - EX31_RS02095 0.43 -1.2
459,819 + EX31_RS02095 0.44 +1.1
459,820 - EX31_RS02095 0.44 -0.2
459,871 + EX31_RS02095 0.48 +0.5
459,871 + EX31_RS02095 0.48 -0.2
459,871 + EX31_RS02095 0.48 +0.3
459,872 - EX31_RS02095 0.48 +0.3
459,903 + EX31_RS02095 0.50 -0.1
460,012 + EX31_RS02095 0.59 +1.2
460,073 + EX31_RS02095 0.64 +0.1
460,197 - EX31_RS02095 0.73 -1.6

Or see this region's nucleotide sequence