Strain Fitness in Rahnella sp. WP5 around EX31_RS24285

Experiment: NL-CCM; low oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24275 and EX31_RS24280 are separated by 171 nucleotidesEX31_RS24280 and EX31_RS24285 overlap by 7 nucleotidesEX31_RS24285 and EX31_RS24290 are separated by 15 nucleotides EX31_RS24275: EX31_RS24275 - hypothetical protein, at 622,453 to 622,647 _RS24275 EX31_RS24280: EX31_RS24280 - hypothetical protein, at 622,819 to 623,283 _RS24280 EX31_RS24285: EX31_RS24285 - DUF1493 family protein, at 623,277 to 623,603 _RS24285 EX31_RS24290: EX31_RS24290 - type VI secretion system tube protein Hcp, at 623,619 to 624,104 _RS24290 Position (kb) 623 624Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 622.287 kb on - strandat 622.346 kb on - strandat 622.346 kb on - strandat 622.368 kb on - strandat 622.451 kb on + strandat 622.468 kb on + strandat 622.663 kb on + strandat 622.769 kb on + strandat 622.819 kb on - strandat 622.849 kb on + strandat 622.914 kb on + strand, within EX31_RS24280at 622.914 kb on + strand, within EX31_RS24280at 622.915 kb on - strand, within EX31_RS24280at 622.958 kb on + strand, within EX31_RS24280at 622.958 kb on + strand, within EX31_RS24280at 622.959 kb on - strand, within EX31_RS24280at 623.019 kb on + strand, within EX31_RS24280at 623.032 kb on + strand, within EX31_RS24280at 623.040 kb on + strand, within EX31_RS24280at 623.040 kb on + strand, within EX31_RS24280at 623.052 kb on + strand, within EX31_RS24280at 623.115 kb on + strand, within EX31_RS24280at 623.116 kb on - strand, within EX31_RS24280at 623.148 kb on + strand, within EX31_RS24280at 623.148 kb on + strand, within EX31_RS24280at 623.148 kb on + strand, within EX31_RS24280at 623.149 kb on - strand, within EX31_RS24280at 623.149 kb on - strand, within EX31_RS24280at 623.190 kb on + strand, within EX31_RS24280at 623.194 kb on - strand, within EX31_RS24280at 623.199 kb on - strand, within EX31_RS24280at 623.199 kb on - strand, within EX31_RS24280at 623.227 kb on + strand, within EX31_RS24280at 623.228 kb on - strand, within EX31_RS24280at 623.245 kb on + strandat 623.334 kb on + strand, within EX31_RS24285at 623.334 kb on + strand, within EX31_RS24285at 623.334 kb on + strand, within EX31_RS24285at 623.335 kb on - strand, within EX31_RS24285at 623.335 kb on - strand, within EX31_RS24285at 623.335 kb on - strand, within EX31_RS24285at 623.392 kb on + strand, within EX31_RS24285at 623.392 kb on + strand, within EX31_RS24285at 623.393 kb on - strand, within EX31_RS24285at 623.422 kb on + strand, within EX31_RS24285at 623.433 kb on + strand, within EX31_RS24285at 623.466 kb on + strand, within EX31_RS24285at 623.552 kb on + strand, within EX31_RS24285at 623.558 kb on + strand, within EX31_RS24285at 623.558 kb on + strand, within EX31_RS24285at 623.558 kb on + strand, within EX31_RS24285at 623.566 kb on + strand, within EX31_RS24285at 623.595 kb on + strandat 623.638 kb on + strandat 623.686 kb on + strand, within EX31_RS24290at 623.687 kb on - strand, within EX31_RS24290at 623.708 kb on - strand, within EX31_RS24290at 623.730 kb on - strand, within EX31_RS24290at 623.750 kb on + strand, within EX31_RS24290at 623.767 kb on + strand, within EX31_RS24290at 623.833 kb on + strand, within EX31_RS24290at 623.833 kb on + strand, within EX31_RS24290at 623.835 kb on + strand, within EX31_RS24290at 623.836 kb on - strand, within EX31_RS24290at 623.836 kb on - strand, within EX31_RS24290at 623.886 kb on + strand, within EX31_RS24290at 623.944 kb on + strand, within EX31_RS24290at 623.945 kb on - strand, within EX31_RS24290at 624.048 kb on + strand, within EX31_RS24290at 624.048 kb on + strand, within EX31_RS24290at 624.049 kb on - strand, within EX31_RS24290at 624.049 kb on - strand, within EX31_RS24290at 624.103 kb on - strandat 624.171 kb on + strandat 624.195 kb on - strandat 624.231 kb on + strandat 624.235 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; low oxygen
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622,287 - -0.3
622,346 - -0.5
622,346 - -0.2
622,368 - -0.8
622,451 + -0.3
622,468 + -0.1
622,663 + -0.1
622,769 + -0.2
622,819 - -0.3
622,849 + -0.6
622,914 + EX31_RS24280 0.20 +1.2
622,914 + EX31_RS24280 0.20 +0.3
622,915 - EX31_RS24280 0.21 +0.0
622,958 + EX31_RS24280 0.30 -0.6
622,958 + EX31_RS24280 0.30 +0.5
622,959 - EX31_RS24280 0.30 -0.9
623,019 + EX31_RS24280 0.43 +0.9
623,032 + EX31_RS24280 0.46 -0.7
623,040 + EX31_RS24280 0.48 -0.2
623,040 + EX31_RS24280 0.48 +0.1
623,052 + EX31_RS24280 0.50 -0.9
623,115 + EX31_RS24280 0.64 +0.5
623,116 - EX31_RS24280 0.64 -0.4
623,148 + EX31_RS24280 0.71 -0.4
623,148 + EX31_RS24280 0.71 -0.3
623,148 + EX31_RS24280 0.71 -1.4
623,149 - EX31_RS24280 0.71 -0.2
623,149 - EX31_RS24280 0.71 -0.3
623,190 + EX31_RS24280 0.80 -2.3
623,194 - EX31_RS24280 0.81 -1.1
623,199 - EX31_RS24280 0.82 +0.8
623,199 - EX31_RS24280 0.82 -0.4
623,227 + EX31_RS24280 0.88 -1.3
623,228 - EX31_RS24280 0.88 +0.3
623,245 + +0.4
623,334 + EX31_RS24285 0.17 +0.4
623,334 + EX31_RS24285 0.17 -0.7
623,334 + EX31_RS24285 0.17 -3.0
623,335 - EX31_RS24285 0.18 -0.4
623,335 - EX31_RS24285 0.18 -1.3
623,335 - EX31_RS24285 0.18 -1.2
623,392 + EX31_RS24285 0.35 -0.6
623,392 + EX31_RS24285 0.35 +0.9
623,393 - EX31_RS24285 0.35 -3.4
623,422 + EX31_RS24285 0.44 -0.4
623,433 + EX31_RS24285 0.48 -0.5
623,466 + EX31_RS24285 0.58 -1.4
623,552 + EX31_RS24285 0.84 -0.6
623,558 + EX31_RS24285 0.86 +0.1
623,558 + EX31_RS24285 0.86 -0.9
623,558 + EX31_RS24285 0.86 +0.3
623,566 + EX31_RS24285 0.88 +0.6
623,595 + +1.9
623,638 + -0.2
623,686 + EX31_RS24290 0.14 +0.3
623,687 - EX31_RS24290 0.14 -0.1
623,708 - EX31_RS24290 0.18 +0.5
623,730 - EX31_RS24290 0.23 +1.7
623,750 + EX31_RS24290 0.27 +0.5
623,767 + EX31_RS24290 0.30 +0.4
623,833 + EX31_RS24290 0.44 +0.2
623,833 + EX31_RS24290 0.44 -0.6
623,835 + EX31_RS24290 0.44 -2.8
623,836 - EX31_RS24290 0.45 -0.2
623,836 - EX31_RS24290 0.45 -0.1
623,886 + EX31_RS24290 0.55 -0.3
623,944 + EX31_RS24290 0.67 +0.9
623,945 - EX31_RS24290 0.67 +0.2
624,048 + EX31_RS24290 0.88 -0.7
624,048 + EX31_RS24290 0.88 +0.3
624,049 - EX31_RS24290 0.88 +0.8
624,049 - EX31_RS24290 0.88 +0.4
624,103 - -2.0
624,171 + -0.4
624,195 - +0.4
624,231 + -0.2
624,235 - +0.2

Or see this region's nucleotide sequence