Strain Fitness in Rahnella sp. WP5 around EX31_RS12645

Experiment: NL-CCM; low oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; low oxygen
198,546	-		EX31_RS12630	0.85	+0.6
198,546	-		EX31_RS12630	0.85	+1.5
198,554	+		EX31_RS12630	0.87	-0.6
198,554	+		EX31_RS12630	0.87	+0.9
198,555	-		EX31_RS12630	0.87	+0.2
198,555	-		EX31_RS12630	0.87	-0.4
198,555	-		EX31_RS12630	0.87	+0.2
198,555	-		EX31_RS12630	0.87	-0.3
198,555	-		EX31_RS12630	0.87	+0.1
198,566	+				-0.2
198,567	-				-0.7
198,567	-				+0.3
198,567	-				-0.1
198,567	-				+0.0
198,567	-				+0.6
198,579	+				+0.0
198,579	+				+0.1
198,594	+				-0.0
198,594	+				-0.1
198,595	-				+0.5
198,640	+				+0.5
198,641	-				-0.0
198,669	-				+0.0
198,705	-				+0.1
198,705	-				-0.6
198,707	+				-0.5
198,707	+				-0.1
198,707	+				+0.4
198,707	+				+0.5
198,707	+				-0.5
198,707	+				+0.3
198,707	+				-1.2
198,708	-				-0.3
198,708	-				+0.1
198,708	-				+0.4
198,708	-				+0.8
198,708	-				+0.7
198,720	+				+0.6
198,721	-				-1.2
198,721	-				-0.4
198,725	+				-0.5
198,725	+				+0.2
198,725	+				+0.2
198,725	+				+0.3
198,725	+				-0.4
198,725	+				+0.0
198,725	+				+0.5
198,725	+				+0.1
198,726	-				+0.4
198,726	-				-0.4
198,726	-				+0.1
198,726	-				-0.4
198,730	+				-0.3
198,737	+				+0.5
198,737	+				+0.4
198,738	-				+0.2
198,738	-				+0.6
198,760	+				-0.9
198,761	-				+0.4
198,761	-				+0.3
198,778	+				-0.3
198,847	+				-0.1
198,848	-				-0.2
198,848	-				-0.1
198,848	-				-0.1
198,879	+		EX31_RS12635	0.12	-0.2
198,879	+		EX31_RS12635	0.12	-0.5
198,879	+		EX31_RS12635	0.12	+0.2
198,879	+		EX31_RS12635	0.12	-0.2
198,880	-		EX31_RS12635	0.12	+0.6
198,880	-		EX31_RS12635	0.12	-0.2
198,880	-		EX31_RS12635	0.12	-1.1
198,880	-		EX31_RS12635	0.12	-0.4
198,880	-		EX31_RS12635	0.12	+1.1
198,880	-		EX31_RS12635	0.12	-0.1
198,880	-		EX31_RS12635	0.12	-0.1
198,880	-		EX31_RS12635	0.12	+0.9
198,894	-		EX31_RS12635	0.17	-0.7
198,947	-		EX31_RS12635	0.35	-0.1
198,979	+		EX31_RS12635	0.47	-0.1
198,979	+		EX31_RS12635	0.47	+0.2
198,979	+		EX31_RS12635	0.47	-0.7
198,980	-		EX31_RS12635	0.47	+0.3
198,980	-		EX31_RS12635	0.47	-0.4
198,980	-		EX31_RS12635	0.47	+0.5
198,980	-		EX31_RS12635	0.47	-0.5
198,980	-		EX31_RS12635	0.47	-0.9
198,983	+		EX31_RS12635	0.48	-0.7
198,983	+		EX31_RS12635	0.48	-0.8
198,983	+		EX31_RS12635	0.48	+0.4
198,983	+		EX31_RS12635	0.48	+0.3
198,984	-		EX31_RS12635	0.48	+0.5
198,984	-		EX31_RS12635	0.48	-0.1
198,984	-		EX31_RS12635	0.48	-0.3
198,984	-		EX31_RS12635	0.48	-0.5
198,990	-		EX31_RS12635	0.51	+1.1
198,990	-		EX31_RS12635	0.51	-0.2
198,990	-		EX31_RS12635	0.51	-0.1
199,130	+				+0.6
199,130	+				-2.6
199,130	+				-0.1
199,130	+				+0.1
199,130	+				-1.1
199,130	+				-0.2
199,131	-				-0.0
199,190	-		EX31_RS12640	0.15	+0.4
199,190	-		EX31_RS12640	0.15	+0.1
199,190	-		EX31_RS12640	0.15	+0.2
199,190	-		EX31_RS12640	0.15	-0.3
199,290	+		EX31_RS12640	0.40	-0.1
199,291	-		EX31_RS12640	0.40	-0.2
199,314	-		EX31_RS12640	0.46	-0.2
199,314	-		EX31_RS12640	0.46	-0.0
199,333	+		EX31_RS12640	0.50	+0.2
199,334	-		EX31_RS12640	0.51	+0.4
199,334	-		EX31_RS12640	0.51	+0.9
199,349	-		EX31_RS12640	0.54	+0.4
199,360	+		EX31_RS12640	0.57	+0.2
199,360	+		EX31_RS12640	0.57	-0.0
199,373	-		EX31_RS12640	0.60	-0.2
199,373	-		EX31_RS12640	0.60	-0.8
199,379	+		EX31_RS12640	0.62	+0.2
199,380	-		EX31_RS12640	0.62	-0.5
199,619	+		EX31_RS12645	0.27	-2.2
199,619	+		EX31_RS12645	0.27	-0.7
199,619	+		EX31_RS12645	0.27	-1.9
199,619	+		EX31_RS12645	0.27	-0.8
199,674	+		EX31_RS12645	0.45	-0.3
199,674	+		EX31_RS12645	0.45	-0.3
199,675	-		EX31_RS12645	0.46	-0.1
199,719	+		EX31_RS12645	0.60	-0.1
199,785	+		EX31_RS12645	0.82	-0.5
199,785	+		EX31_RS12645	0.82	+0.1
199,786	-		EX31_RS12645	0.82	-0.9
199,786	-		EX31_RS12645	0.82	-0.4
199,786	-		EX31_RS12645	0.82	-0.4
199,827	+				-1.3
199,827	+				-0.0
199,827	+				-0.5
199,828	-				+1.2
199,828	-				-0.5
199,828	-				+0.1
199,828	-				+0.5
199,828	-				+0.3
199,828	-				-0.2
199,828	-				-0.8
199,828	-				+0.1
199,828	-				-0.2
199,828	-				+0.5
199,830	+				-0.7
199,830	+				-1.8
199,830	+				+0.4
199,830	+				+0.4
199,831	-				-0.4
199,833	+				-0.5
199,834	-				+0.3
199,834	-				+0.1
199,843	+				+0.1
199,843	+				-0.5
199,844	-				-0.6
199,844	-				+0.5
199,844	-				+0.3
199,844	-				-0.7
199,844	-				+0.3
199,844	-				-0.3
199,844	-				-0.7
199,844	-				+0.3
199,855	+				-1.0
199,855	+				-0.2
199,856	-				-1.6
199,856	-				-0.6
199,856	-				+0.4
199,856	-				-0.1
199,856	-				+0.2
199,860	+				-0.6
199,877	+				-0.9
199,877	+				+1.4
199,878	-				+0.4
199,878	-				+0.4
199,942	-				-0.5
199,942	-				+0.7
199,989	-				-0.9
200,178	+		EX31_RS12650	0.51	+0.5
200,179	-		EX31_RS12650	0.51	-0.3
200,189	-		EX31_RS12650	0.53	-0.0
200,189	-		EX31_RS12650	0.53	-0.9
200,271	+		EX31_RS12650	0.75	-0.4
200,271	+		EX31_RS12650	0.75	+0.5
200,272	-		EX31_RS12650	0.75	-0.7
200,272	-		EX31_RS12650	0.75	-0.0
200,317	-		EX31_RS12650	0.87	+0.3
200,317	-		EX31_RS12650	0.87	+0.1
200,317	-		EX31_RS12650	0.87	+0.5
200,350	+				+0.9
200,351	-				-0.2
200,351	-				-0.3
200,351	-				-0.3
200,403	+				+0.5
200,403	+				-0.1
200,403	+				-0.1
200,403	+				+0.7
200,403	+				+0.2
200,404	-				+1.0
200,404	-				-0.2
200,404	-				+1.8
200,404	-				-0.4
200,404	-				+0.1
200,404	-				+0.1
200,404	-				-1.7
200,426	+				-0.8
200,426	+				-0.7
200,427	-				-1.6
200,427	-				+0.3
200,435	+				-0.4
200,443	-				-0.5
200,443	-				+0.8
200,447	+				-0.1
200,448	-				-0.1
200,448	-				-0.2
200,448	-				-0.7
200,449	+				+0.2
200,449	+				+1.0
200,450	-				-0.3
200,450	-				+0.1
200,450	-				+0.3
200,450	-				+0.4
200,450	-				-0.1
200,450	-				+0.4
200,462	+				-0.6
200,462	+				+0.6
200,462	+				+0.4
200,462	+				-0.0
200,462	+				+0.2
200,462	+				-0.4
200,462	+				-0.1
200,462	+				-0.1
200,462	+				+0.6
200,462	+				-1.2
200,462	+				+0.3
200,462	+				-0.1
200,463	-				-0.8
200,463	-				-0.3
200,463	-				+0.7
200,463	-				+1.0
200,463	-				-0.3
200,463	-				-0.3
200,466	+				+0.3
200,466	+				+0.0
200,466	+				+0.7
200,466	+				-1.4
200,466	+				+0.1
200,467	-				-0.4
200,467	-				+0.8
200,467	-				+0.7
200,467	-				+0.9
200,467	-				+0.2
200,467	-				-0.2
200,467	-				-1.0
200,467	-				-0.3
200,467	-				+0.0
200,467	-				+0.5
200,467	-				+0.2
200,467	-				-1.1
200,467	-				-0.5
200,472	+				-0.2
200,472	+				-0.7
200,472	+				-0.2
200,472	+				+0.8
200,472	+				-1.9
200,473	-				+0.1
200,473	-				+0.3
200,508	+				+0.5
200,508	+				+0.4
200,508	+				+0.5
200,509	-				-0.6
200,561	+		EX31_RS12655	0.17	+0.4
200,561	+		EX31_RS12655	0.17	-0.1
200,561	+		EX31_RS12655	0.17	-0.2
200,561	+		EX31_RS12655	0.17	+0.1
200,561	+		EX31_RS12655	0.17	+0.5
200,561	+		EX31_RS12655	0.17	+0.2
200,561	+		EX31_RS12655	0.17	+0.3
200,562	-		EX31_RS12655	0.17	-0.3
200,562	-		EX31_RS12655	0.17	-0.1
200,562	-		EX31_RS12655	0.17	+0.4
200,562	-		EX31_RS12655	0.17	+0.2
200,564	+		EX31_RS12655	0.17	+0.5
200,564	+		EX31_RS12655	0.17	-1.6
200,602	+		EX31_RS12655	0.27	-0.2
200,603	-		EX31_RS12655	0.28	+0.1
200,645	-		EX31_RS12655	0.39	+0.2
200,645	-		EX31_RS12655	0.39	+0.1
200,670	+		EX31_RS12655	0.45	+0.4
200,670	+		EX31_RS12655	0.45	+0.3
200,671	-		EX31_RS12655	0.45	-0.3
200,711	+		EX31_RS12655	0.56	-0.2
200,711	+		EX31_RS12655	0.56	+0.9
200,711	+		EX31_RS12655	0.56	+0.1
200,712	-		EX31_RS12655	0.56	-1.6
200,712	-		EX31_RS12655	0.56	+0.9
200,712	-		EX31_RS12655	0.56	+0.1
200,717	+		EX31_RS12655	0.57	-0.1
200,717	+		EX31_RS12655	0.57	-0.3
200,717	+		EX31_RS12655	0.57	+0.1
200,718	-		EX31_RS12655	0.58	+1.3
200,718	-		EX31_RS12655	0.58	-0.3
200,718	-		EX31_RS12655	0.58	+0.3
200,718	-		EX31_RS12655	0.58	-0.9
200,718	-		EX31_RS12655	0.58	+0.4
200,811	+		EX31_RS12655	0.82	-0.4
200,811	+		EX31_RS12655	0.82	-0.8