Strain Fitness in Rahnella sp. WP5 around EX31_RS11965

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11955 and EX31_RS11960 overlap by 19 nucleotidesEX31_RS11960 and EX31_RS11965 are separated by 6 nucleotidesEX31_RS11965 and EX31_RS11970 are separated by 101 nucleotides EX31_RS11955: EX31_RS11955 - MmcQ/YjbR family DNA-binding protein, at 53,290 to 53,643 _RS11955 EX31_RS11960: EX31_RS11960 - pyridoxamine 5'-phosphate oxidase, at 53,625 to 54,545 _RS11960 EX31_RS11965: EX31_RS11965 - glutathione S-transferase, at 54,552 to 55,172 _RS11965 EX31_RS11970: EX31_RS11970 - LysR family transcriptional regulator, at 55,274 to 56,191 _RS11970 Position (kb) 54 55 56Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 53.566 kb on + strand, within EX31_RS11955at 53.566 kb on + strand, within EX31_RS11955at 53.566 kb on + strand, within EX31_RS11955at 53.567 kb on - strand, within EX31_RS11955at 53.567 kb on - strand, within EX31_RS11955at 53.567 kb on - strand, within EX31_RS11955at 53.567 kb on - strand, within EX31_RS11955at 53.567 kb on - strand, within EX31_RS11955at 53.570 kb on - strand, within EX31_RS11955at 53.587 kb on + strand, within EX31_RS11955at 53.588 kb on - strand, within EX31_RS11955at 53.755 kb on + strand, within EX31_RS11960at 53.756 kb on - strand, within EX31_RS11960at 53.783 kb on + strand, within EX31_RS11960at 53.852 kb on + strand, within EX31_RS11960at 53.897 kb on + strand, within EX31_RS11960at 53.897 kb on + strand, within EX31_RS11960at 53.898 kb on - strand, within EX31_RS11960at 53.903 kb on + strand, within EX31_RS11960at 53.903 kb on + strand, within EX31_RS11960at 53.903 kb on + strand, within EX31_RS11960at 53.904 kb on - strand, within EX31_RS11960at 53.904 kb on - strand, within EX31_RS11960at 53.904 kb on - strand, within EX31_RS11960at 53.904 kb on - strand, within EX31_RS11960at 53.905 kb on + strand, within EX31_RS11960at 53.905 kb on + strand, within EX31_RS11960at 53.906 kb on - strand, within EX31_RS11960at 53.906 kb on - strand, within EX31_RS11960at 54.075 kb on - strand, within EX31_RS11960at 54.075 kb on - strand, within EX31_RS11960at 54.127 kb on - strand, within EX31_RS11960at 54.127 kb on - strand, within EX31_RS11960at 54.127 kb on - strand, within EX31_RS11960at 54.134 kb on + strand, within EX31_RS11960at 54.134 kb on + strand, within EX31_RS11960at 54.135 kb on - strand, within EX31_RS11960at 54.136 kb on + strand, within EX31_RS11960at 54.136 kb on + strand, within EX31_RS11960at 54.136 kb on + strand, within EX31_RS11960at 54.136 kb on + strand, within EX31_RS11960at 54.137 kb on - strand, within EX31_RS11960at 54.137 kb on - strand, within EX31_RS11960at 54.137 kb on - strand, within EX31_RS11960at 54.137 kb on - strand, within EX31_RS11960at 54.137 kb on - strand, within EX31_RS11960at 54.137 kb on - strand, within EX31_RS11960at 54.137 kb on - strand, within EX31_RS11960at 54.137 kb on - strand, within EX31_RS11960at 54.149 kb on + strand, within EX31_RS11960at 54.149 kb on + strand, within EX31_RS11960at 54.150 kb on - strand, within EX31_RS11960at 54.276 kb on + strand, within EX31_RS11960at 54.344 kb on + strand, within EX31_RS11960at 54.350 kb on + strand, within EX31_RS11960at 54.350 kb on + strand, within EX31_RS11960at 54.414 kb on - strand, within EX31_RS11960at 54.421 kb on + strand, within EX31_RS11960at 54.593 kb on + strandat 54.685 kb on + strand, within EX31_RS11965at 54.685 kb on + strand, within EX31_RS11965at 54.685 kb on + strand, within EX31_RS11965at 54.685 kb on + strand, within EX31_RS11965at 54.685 kb on + strand, within EX31_RS11965at 54.685 kb on + strand, within EX31_RS11965at 54.685 kb on + strand, within EX31_RS11965at 54.685 kb on + strand, within EX31_RS11965at 54.685 kb on + strand, within EX31_RS11965at 54.685 kb on + strand, within EX31_RS11965at 54.686 kb on - strand, within EX31_RS11965at 54.686 kb on - strand, within EX31_RS11965at 54.686 kb on - strand, within EX31_RS11965at 54.686 kb on - strand, within EX31_RS11965at 54.686 kb on - strand, within EX31_RS11965at 54.686 kb on - strand, within EX31_RS11965at 54.691 kb on + strand, within EX31_RS11965at 54.691 kb on + strand, within EX31_RS11965at 54.691 kb on + strand, within EX31_RS11965at 54.691 kb on + strand, within EX31_RS11965at 54.691 kb on + strand, within EX31_RS11965at 54.692 kb on - strand, within EX31_RS11965at 54.692 kb on - strand, within EX31_RS11965at 54.944 kb on - strand, within EX31_RS11965at 54.959 kb on - strand, within EX31_RS11965at 55.032 kb on + strand, within EX31_RS11965at 55.033 kb on - strand, within EX31_RS11965at 55.033 kb on - strand, within EX31_RS11965at 55.033 kb on - strand, within EX31_RS11965at 55.119 kb on + strandat 55.120 kb on - strandat 55.120 kb on - strandat 55.120 kb on - strandat 55.120 kb on - strandat 55.154 kb on - strandat 55.154 kb on - strandat 55.154 kb on - strandat 55.186 kb on + strandat 55.187 kb on - strandat 55.206 kb on + strandat 55.207 kb on - strandat 55.311 kb on + strandat 55.311 kb on + strandat 55.319 kb on + strandat 55.319 kb on + strandat 55.345 kb on + strandat 55.520 kb on - strand, within EX31_RS11970at 55.647 kb on + strand, within EX31_RS11970at 55.657 kb on + strand, within EX31_RS11970at 55.683 kb on + strand, within EX31_RS11970at 55.683 kb on + strand, within EX31_RS11970at 55.683 kb on + strand, within EX31_RS11970at 55.684 kb on - strand, within EX31_RS11970at 55.684 kb on - strand, within EX31_RS11970at 55.852 kb on + strand, within EX31_RS11970at 55.983 kb on + strand, within EX31_RS11970at 55.984 kb on - strand, within EX31_RS11970at 55.992 kb on - strand, within EX31_RS11970at 56.023 kb on + strand, within EX31_RS11970at 56.024 kb on - strand, within EX31_RS11970at 56.068 kb on - strand, within EX31_RS11970at 56.068 kb on - strand, within EX31_RS11970at 56.089 kb on - strand, within EX31_RS11970at 56.109 kb on + strandat 56.169 kb on + strandat 56.169 kb on + strandat 56.169 kb on + strandat 56.169 kb on + strandat 56.169 kb on + strandat 56.170 kb on - strandat 56.170 kb on - strandat 56.170 kb on - strandat 56.170 kb on - strandat 56.170 kb on - strandat 56.170 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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53,566 + EX31_RS11955 0.78 +1.1
53,566 + EX31_RS11955 0.78 +0.3
53,566 + EX31_RS11955 0.78 -0.2
53,567 - EX31_RS11955 0.78 -0.7
53,567 - EX31_RS11955 0.78 -1.2
53,567 - EX31_RS11955 0.78 +0.2
53,567 - EX31_RS11955 0.78 -0.2
53,567 - EX31_RS11955 0.78 +0.8
53,570 - EX31_RS11955 0.79 +0.7
53,587 + EX31_RS11955 0.84 +0.2
53,588 - EX31_RS11955 0.84 +0.1
53,755 + EX31_RS11960 0.14 -1.1
53,756 - EX31_RS11960 0.14 +0.4
53,783 + EX31_RS11960 0.17 +0.2
53,852 + EX31_RS11960 0.25 +0.1
53,897 + EX31_RS11960 0.30 -0.9
53,897 + EX31_RS11960 0.30 +0.2
53,898 - EX31_RS11960 0.30 -1.3
53,903 + EX31_RS11960 0.30 -0.8
53,903 + EX31_RS11960 0.30 -1.4
53,903 + EX31_RS11960 0.30 +0.5
53,904 - EX31_RS11960 0.30 +0.4
53,904 - EX31_RS11960 0.30 -0.1
53,904 - EX31_RS11960 0.30 -2.1
53,904 - EX31_RS11960 0.30 +1.5
53,905 + EX31_RS11960 0.30 +1.4
53,905 + EX31_RS11960 0.30 -0.3
53,906 - EX31_RS11960 0.31 -1.3
53,906 - EX31_RS11960 0.31 +0.5
54,075 - EX31_RS11960 0.49 -0.2
54,075 - EX31_RS11960 0.49 +1.5
54,127 - EX31_RS11960 0.55 -1.4
54,127 - EX31_RS11960 0.55 +0.5
54,127 - EX31_RS11960 0.55 -1.4
54,134 + EX31_RS11960 0.55 -2.9
54,134 + EX31_RS11960 0.55 +0.3
54,135 - EX31_RS11960 0.55 +0.3
54,136 + EX31_RS11960 0.55 -0.3
54,136 + EX31_RS11960 0.55 +0.6
54,136 + EX31_RS11960 0.55 +1.7
54,136 + EX31_RS11960 0.55 +1.8
54,137 - EX31_RS11960 0.56 -0.4
54,137 - EX31_RS11960 0.56 -0.3
54,137 - EX31_RS11960 0.56 +0.4
54,137 - EX31_RS11960 0.56 +0.1
54,137 - EX31_RS11960 0.56 -1.0
54,137 - EX31_RS11960 0.56 +0.2
54,137 - EX31_RS11960 0.56 -1.6
54,137 - EX31_RS11960 0.56 +0.6
54,149 + EX31_RS11960 0.57 -1.4
54,149 + EX31_RS11960 0.57 +0.9
54,150 - EX31_RS11960 0.57 -0.1
54,276 + EX31_RS11960 0.71 -1.2
54,344 + EX31_RS11960 0.78 +0.2
54,350 + EX31_RS11960 0.79 +0.2
54,350 + EX31_RS11960 0.79 -1.1
54,414 - EX31_RS11960 0.86 +0.1
54,421 + EX31_RS11960 0.86 -0.2
54,593 + -0.8
54,685 + EX31_RS11965 0.21 -0.0
54,685 + EX31_RS11965 0.21 +0.3
54,685 + EX31_RS11965 0.21 +1.2
54,685 + EX31_RS11965 0.21 -0.1
54,685 + EX31_RS11965 0.21 +0.8
54,685 + EX31_RS11965 0.21 -0.2
54,685 + EX31_RS11965 0.21 -0.3
54,685 + EX31_RS11965 0.21 +0.1
54,685 + EX31_RS11965 0.21 -3.1
54,685 + EX31_RS11965 0.21 +0.9
54,686 - EX31_RS11965 0.22 +0.7
54,686 - EX31_RS11965 0.22 +0.5
54,686 - EX31_RS11965 0.22 -0.7
54,686 - EX31_RS11965 0.22 -1.3
54,686 - EX31_RS11965 0.22 -1.4
54,686 - EX31_RS11965 0.22 +0.5
54,691 + EX31_RS11965 0.22 -1.1
54,691 + EX31_RS11965 0.22 +0.3
54,691 + EX31_RS11965 0.22 -0.4
54,691 + EX31_RS11965 0.22 +0.5
54,691 + EX31_RS11965 0.22 +0.9
54,692 - EX31_RS11965 0.23 -1.1
54,692 - EX31_RS11965 0.23 -0.1
54,944 - EX31_RS11965 0.63 -1.7
54,959 - EX31_RS11965 0.66 +0.5
55,032 + EX31_RS11965 0.77 +0.3
55,033 - EX31_RS11965 0.77 -1.2
55,033 - EX31_RS11965 0.77 -1.5
55,033 - EX31_RS11965 0.77 -2.5
55,119 + -0.5
55,120 - +0.4
55,120 - -0.8
55,120 - +0.7
55,120 - +0.1
55,154 - +0.5
55,154 - +0.0
55,154 - +0.1
55,186 + +0.9
55,187 - -0.8
55,206 + +0.1
55,207 - +0.8
55,311 + -0.3
55,311 + -1.2
55,319 + +0.5
55,319 + -0.3
55,345 + +0.6
55,520 - EX31_RS11970 0.27 -0.3
55,647 + EX31_RS11970 0.41 -0.0
55,657 + EX31_RS11970 0.42 +0.0
55,683 + EX31_RS11970 0.45 -0.1
55,683 + EX31_RS11970 0.45 -0.7
55,683 + EX31_RS11970 0.45 -2.6
55,684 - EX31_RS11970 0.45 -1.0
55,684 - EX31_RS11970 0.45 +0.8
55,852 + EX31_RS11970 0.63 +0.0
55,983 + EX31_RS11970 0.77 +0.6
55,984 - EX31_RS11970 0.77 +0.1
55,992 - EX31_RS11970 0.78 -0.9
56,023 + EX31_RS11970 0.82 +0.1
56,024 - EX31_RS11970 0.82 -0.5
56,068 - EX31_RS11970 0.86 +0.1
56,068 - EX31_RS11970 0.86 -1.3
56,089 - EX31_RS11970 0.89 +0.0
56,109 + +1.4
56,169 + +0.3
56,169 + +0.6
56,169 + +0.5
56,169 + +0.1
56,169 + -0.1
56,170 - -0.2
56,170 - -0.0
56,170 - -0.9
56,170 - +0.7
56,170 - +2.1
56,170 - -0.4

Or see this region's nucleotide sequence