Experiment: NL-CCM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18740 and EX31_RS18745 overlap by 4 nucleotides EX31_RS18745 and EX31_RS18750 are separated by 277 nucleotides
EX31_RS18740: EX31_RS18740 - dipeptide ABC transporter ATP-binding protein, at 329,520 to 331,388
_RS18740
EX31_RS18745: EX31_RS18745 - isoaspartyl peptidase/L-asparaginase, at 331,385 to 332,389
_RS18745
EX31_RS18750: EX31_RS18750 - MFS transporter TsgA, at 332,667 to 333,866
_RS18750
Position (kb) 331
332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 330.586 kb on + strand, within EX31_RS18740 at 330.587 kb on - strand, within EX31_RS18740 at 330.587 kb on - strand, within EX31_RS18740 at 330.587 kb on - strand, within EX31_RS18740 at 330.587 kb on - strand, within EX31_RS18740 at 330.587 kb on - strand, within EX31_RS18740 at 330.705 kb on - strand, within EX31_RS18740 at 330.821 kb on + strand, within EX31_RS18740 at 330.915 kb on - strand, within EX31_RS18740 at 330.968 kb on + strand, within EX31_RS18740 at 330.968 kb on + strand, within EX31_RS18740 at 330.968 kb on + strand, within EX31_RS18740 at 330.969 kb on - strand, within EX31_RS18740 at 331.128 kb on - strand, within EX31_RS18740 at 331.396 kb on - strand at 331.396 kb on - strand at 331.441 kb on - strand at 331.441 kb on - strand at 331.441 kb on - strand at 331.441 kb on - strand at 331.441 kb on - strand at 331.484 kb on - strand at 331.543 kb on + strand, within EX31_RS18745 at 331.543 kb on + strand, within EX31_RS18745 at 331.543 kb on + strand, within EX31_RS18745 at 331.543 kb on + strand, within EX31_RS18745 at 331.544 kb on - strand, within EX31_RS18745 at 331.544 kb on - strand, within EX31_RS18745 at 331.544 kb on - strand, within EX31_RS18745 at 331.599 kb on + strand, within EX31_RS18745 at 331.599 kb on + strand, within EX31_RS18745 at 331.618 kb on + strand, within EX31_RS18745 at 331.618 kb on + strand, within EX31_RS18745 at 331.658 kb on - strand, within EX31_RS18745 at 331.658 kb on - strand, within EX31_RS18745 at 331.730 kb on - strand, within EX31_RS18745 at 331.730 kb on - strand, within EX31_RS18745 at 331.801 kb on + strand, within EX31_RS18745 at 331.802 kb on - strand, within EX31_RS18745 at 331.802 kb on - strand, within EX31_RS18745 at 331.899 kb on + strand, within EX31_RS18745 at 332.048 kb on + strand, within EX31_RS18745 at 332.149 kb on + strand, within EX31_RS18745 at 332.150 kb on - strand, within EX31_RS18745 at 332.150 kb on - strand, within EX31_RS18745 at 332.154 kb on - strand, within EX31_RS18745 at 332.224 kb on + strand, within EX31_RS18745 at 332.225 kb on - strand, within EX31_RS18745 at 332.243 kb on + strand, within EX31_RS18745 at 332.244 kb on - strand, within EX31_RS18745 at 332.244 kb on - strand, within EX31_RS18745 at 332.244 kb on - strand, within EX31_RS18745 at 332.244 kb on - strand, within EX31_RS18745 at 332.261 kb on + strand, within EX31_RS18745 at 332.265 kb on + strand, within EX31_RS18745 at 332.265 kb on + strand, within EX31_RS18745 at 332.265 kb on + strand, within EX31_RS18745 at 332.266 kb on - strand, within EX31_RS18745 at 332.266 kb on - strand, within EX31_RS18745 at 332.413 kb on + strand at 332.413 kb on + strand at 332.413 kb on + strand at 332.413 kb on + strand at 332.413 kb on + strand at 332.413 kb on + strand at 332.413 kb on + strand at 332.413 kb on + strand at 332.413 kb on + strand at 332.414 kb on - strand at 332.414 kb on - strand at 332.414 kb on - strand at 332.414 kb on - strand at 332.414 kb on - strand at 332.414 kb on - strand at 332.414 kb on - strand at 332.414 kb on - strand at 332.414 kb on - strand at 332.414 kb on - strand at 332.414 kb on - strand at 332.414 kb on - strand at 332.414 kb on - strand at 332.414 kb on - strand at 332.417 kb on + strand at 332.421 kb on + strand at 332.421 kb on + strand at 332.421 kb on + strand at 332.422 kb on - strand at 332.422 kb on - strand at 332.422 kb on - strand at 332.423 kb on + strand at 332.424 kb on - strand at 332.424 kb on - strand at 332.424 kb on - strand at 332.450 kb on - strand at 332.450 kb on - strand at 332.450 kb on - strand at 332.451 kb on + strand at 332.451 kb on + strand at 332.451 kb on + strand at 332.451 kb on + strand at 332.451 kb on + strand at 332.452 kb on - strand at 332.455 kb on + strand at 332.472 kb on + strand at 332.472 kb on + strand at 332.472 kb on + strand at 332.472 kb on + strand at 332.473 kb on - strand at 332.473 kb on - strand at 332.473 kb on - strand at 332.473 kb on - strand at 332.513 kb on + strand at 332.550 kb on + strand at 332.550 kb on + strand at 332.550 kb on + strand at 332.551 kb on - strand at 332.551 kb on - strand at 332.551 kb on - strand at 332.582 kb on + strand at 332.585 kb on + strand at 332.585 kb on + strand at 332.585 kb on + strand at 332.586 kb on - strand at 332.594 kb on + strand at 332.594 kb on + strand at 332.594 kb on + strand at 332.594 kb on + strand at 332.594 kb on + strand at 332.595 kb on - strand at 332.595 kb on - strand at 332.598 kb on + strand at 332.653 kb on + strand at 332.679 kb on + strand at 332.680 kb on - strand at 332.680 kb on - strand at 332.682 kb on - strand at 332.719 kb on - strand at 332.783 kb on + strand at 332.849 kb on + strand, within EX31_RS18750 at 332.850 kb on - strand, within EX31_RS18750 at 332.850 kb on - strand, within EX31_RS18750 at 332.873 kb on + strand, within EX31_RS18750 at 332.873 kb on + strand, within EX31_RS18750 at 332.873 kb on + strand, within EX31_RS18750 at 332.873 kb on + strand, within EX31_RS18750 at 332.873 kb on + strand, within EX31_RS18750 at 332.873 kb on + strand, within EX31_RS18750 at 332.874 kb on - strand, within EX31_RS18750 at 332.930 kb on + strand, within EX31_RS18750 at 332.954 kb on + strand, within EX31_RS18750 at 332.954 kb on + strand, within EX31_RS18750 at 332.954 kb on + strand, within EX31_RS18750 at 332.954 kb on + strand, within EX31_RS18750 at 332.955 kb on - strand, within EX31_RS18750 at 332.957 kb on + strand, within EX31_RS18750 at 332.957 kb on + strand, within EX31_RS18750 at 332.957 kb on + strand, within EX31_RS18750 at 332.958 kb on - strand, within EX31_RS18750 at 332.958 kb on - strand, within EX31_RS18750 at 333.024 kb on + strand, within EX31_RS18750 at 333.024 kb on + strand, within EX31_RS18750 at 333.024 kb on + strand, within EX31_RS18750 at 333.025 kb on - strand, within EX31_RS18750 at 333.025 kb on - strand, within EX31_RS18750 at 333.034 kb on + strand, within EX31_RS18750 at 333.034 kb on + strand, within EX31_RS18750 at 333.034 kb on + strand, within EX31_RS18750 at 333.034 kb on + strand, within EX31_RS18750 at 333.035 kb on - strand, within EX31_RS18750 at 333.038 kb on + strand, within EX31_RS18750 at 333.038 kb on + strand, within EX31_RS18750 at 333.038 kb on + strand, within EX31_RS18750 at 333.038 kb on + strand, within EX31_RS18750 at 333.038 kb on + strand, within EX31_RS18750 at 333.039 kb on - strand, within EX31_RS18750 at 333.039 kb on - strand, within EX31_RS18750 at 333.042 kb on - strand, within EX31_RS18750 at 333.042 kb on - strand, within EX31_RS18750 at 333.108 kb on - strand, within EX31_RS18750 at 333.168 kb on + strand, within EX31_RS18750 at 333.168 kb on + strand, within EX31_RS18750 at 333.168 kb on + strand, within EX31_RS18750 at 333.169 kb on - strand, within EX31_RS18750 at 333.206 kb on - strand, within EX31_RS18750 at 333.311 kb on + strand, within EX31_RS18750 at 333.312 kb on - strand, within EX31_RS18750 at 333.373 kb on + strand, within EX31_RS18750 at 333.373 kb on + strand, within EX31_RS18750 at 333.373 kb on + strand, within EX31_RS18750 at 333.373 kb on + strand, within EX31_RS18750 at 333.389 kb on + strand, within EX31_RS18750
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM remove 330,586 + EX31_RS18740 0.57 -1.3 330,587 - EX31_RS18740 0.57 +0.6 330,587 - EX31_RS18740 0.57 +0.1 330,587 - EX31_RS18740 0.57 +0.6 330,587 - EX31_RS18740 0.57 +0.2 330,587 - EX31_RS18740 0.57 +0.2 330,705 - EX31_RS18740 0.63 -2.0 330,821 + EX31_RS18740 0.70 +0.1 330,915 - EX31_RS18740 0.75 -0.2 330,968 + EX31_RS18740 0.77 +0.2 330,968 + EX31_RS18740 0.77 -0.1 330,968 + EX31_RS18740 0.77 -1.8 330,969 - EX31_RS18740 0.78 +1.4 331,128 - EX31_RS18740 0.86 +0.2 331,396 - -0.2 331,396 - +0.1 331,441 - -1.0 331,441 - -0.1 331,441 - -2.4 331,441 - +0.0 331,441 - -0.7 331,484 - -0.8 331,543 + EX31_RS18745 0.16 +0.1 331,543 + EX31_RS18745 0.16 +0.1 331,543 + EX31_RS18745 0.16 +0.4 331,543 + EX31_RS18745 0.16 +0.2 331,544 - EX31_RS18745 0.16 +0.0 331,544 - EX31_RS18745 0.16 -1.2 331,544 - EX31_RS18745 0.16 -0.5 331,599 + EX31_RS18745 0.21 -2.5 331,599 + EX31_RS18745 0.21 -0.4 331,618 + EX31_RS18745 0.23 -0.6 331,618 + EX31_RS18745 0.23 -1.1 331,658 - EX31_RS18745 0.27 -1.6 331,658 - EX31_RS18745 0.27 -0.3 331,730 - EX31_RS18745 0.34 +0.6 331,730 - EX31_RS18745 0.34 -0.6 331,801 + EX31_RS18745 0.41 -1.3 331,802 - EX31_RS18745 0.41 -0.3 331,802 - EX31_RS18745 0.41 -0.7 331,899 + EX31_RS18745 0.51 -1.3 332,048 + EX31_RS18745 0.66 -2.1 332,149 + EX31_RS18745 0.76 -0.1 332,150 - EX31_RS18745 0.76 -0.3 332,150 - EX31_RS18745 0.76 -0.5 332,154 - EX31_RS18745 0.77 -0.1 332,224 + EX31_RS18745 0.83 -1.5 332,225 - EX31_RS18745 0.84 -0.1 332,243 + EX31_RS18745 0.85 -0.6 332,244 - EX31_RS18745 0.85 +0.6 332,244 - EX31_RS18745 0.85 -0.0 332,244 - EX31_RS18745 0.85 -1.1 332,244 - EX31_RS18745 0.85 +0.7 332,261 + EX31_RS18745 0.87 -0.0 332,265 + EX31_RS18745 0.88 -1.1 332,265 + EX31_RS18745 0.88 -0.4 332,265 + EX31_RS18745 0.88 -0.5 332,266 - EX31_RS18745 0.88 -0.7 332,266 - EX31_RS18745 0.88 -1.0 332,413 + -0.3 332,413 + +0.3 332,413 + -1.2 332,413 + +0.6 332,413 + +0.1 332,413 + +0.3 332,413 + +0.8 332,413 + -0.1 332,413 + +0.1 332,414 - -0.2 332,414 - -0.5 332,414 - -0.0 332,414 - -0.2 332,414 - +0.0 332,414 - +0.2 332,414 - +1.6 332,414 - -0.1 332,414 - -0.2 332,414 - +0.1 332,414 - +0.6 332,414 - -0.2 332,414 - +0.3 332,414 - +0.9 332,417 + -0.4 332,421 + -0.8 332,421 + -0.6 332,421 + +0.2 332,422 - -0.3 332,422 - +0.8 332,422 - -0.2 332,423 + -0.7 332,424 - -0.3 332,424 - -0.9 332,424 - -0.8 332,450 - +0.1 332,450 - +0.4 332,450 - -0.3 332,451 + +0.7 332,451 + -0.3 332,451 + +1.0 332,451 + +0.3 332,451 + +0.9 332,452 - -0.8 332,455 + +2.0 332,472 + -0.2 332,472 + -0.0 332,472 + +0.1 332,472 + -0.8 332,473 - +0.0 332,473 - -0.4 332,473 - +0.2 332,473 - +0.1 332,513 + +0.6 332,550 + +0.4 332,550 + -0.8 332,550 + -1.1 332,551 - -0.9 332,551 - +1.3 332,551 - +0.2 332,582 + -0.9 332,585 + +0.1 332,585 + -0.0 332,585 + +0.4 332,586 - -0.0 332,594 + +0.1 332,594 + -0.3 332,594 + +0.5 332,594 + -1.1 332,594 + -0.7 332,595 - +0.3 332,595 - -0.1 332,598 + -0.9 332,653 + +0.6 332,679 + +0.3 332,680 - +0.1 332,680 - -0.1 332,682 - +1.4 332,719 - -1.0 332,783 + -0.2 332,849 + EX31_RS18750 0.15 +1.0 332,850 - EX31_RS18750 0.15 -0.7 332,850 - EX31_RS18750 0.15 -2.9 332,873 + EX31_RS18750 0.17 +0.7 332,873 + EX31_RS18750 0.17 +0.2 332,873 + EX31_RS18750 0.17 +0.1 332,873 + EX31_RS18750 0.17 -0.4 332,873 + EX31_RS18750 0.17 +0.3 332,873 + EX31_RS18750 0.17 +0.3 332,874 - EX31_RS18750 0.17 +0.7 332,930 + EX31_RS18750 0.22 +0.1 332,954 + EX31_RS18750 0.24 +0.7 332,954 + EX31_RS18750 0.24 +0.9 332,954 + EX31_RS18750 0.24 +0.1 332,954 + EX31_RS18750 0.24 +0.0 332,955 - EX31_RS18750 0.24 -0.0 332,957 + EX31_RS18750 0.24 -1.0 332,957 + EX31_RS18750 0.24 +0.2 332,957 + EX31_RS18750 0.24 -0.3 332,958 - EX31_RS18750 0.24 +0.1 332,958 - EX31_RS18750 0.24 -0.4 333,024 + EX31_RS18750 0.30 -0.4 333,024 + EX31_RS18750 0.30 -0.6 333,024 + EX31_RS18750 0.30 -0.1 333,025 - EX31_RS18750 0.30 +0.1 333,025 - EX31_RS18750 0.30 -0.5 333,034 + EX31_RS18750 0.31 +0.4 333,034 + EX31_RS18750 0.31 +1.0 333,034 + EX31_RS18750 0.31 +0.5 333,034 + EX31_RS18750 0.31 -1.4 333,035 - EX31_RS18750 0.31 +0.5 333,038 + EX31_RS18750 0.31 +0.5 333,038 + EX31_RS18750 0.31 -0.1 333,038 + EX31_RS18750 0.31 -1.0 333,038 + EX31_RS18750 0.31 +0.8 333,038 + EX31_RS18750 0.31 +0.1 333,039 - EX31_RS18750 0.31 -0.3 333,039 - EX31_RS18750 0.31 +0.0 333,042 - EX31_RS18750 0.31 -0.1 333,042 - EX31_RS18750 0.31 +0.9 333,108 - EX31_RS18750 0.37 +0.3 333,168 + EX31_RS18750 0.42 +0.3 333,168 + EX31_RS18750 0.42 +0.1 333,168 + EX31_RS18750 0.42 +0.4 333,169 - EX31_RS18750 0.42 -1.9 333,206 - EX31_RS18750 0.45 +0.8 333,311 + EX31_RS18750 0.54 +0.3 333,312 - EX31_RS18750 0.54 -2.3 333,373 + EX31_RS18750 0.59 -0.1 333,373 + EX31_RS18750 0.59 +0.2 333,373 + EX31_RS18750 0.59 +0.0 333,373 + EX31_RS18750 0.59 -0.7 333,389 + EX31_RS18750 0.60 +1.3
Or see this region's nucleotide sequence