Experiment: NL-CCM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10240 and EX31_RS10245 are separated by 47 nucleotides EX31_RS10245 and EX31_RS10250 are separated by 28 nucleotides
EX31_RS10240: EX31_RS10240 - ABC transporter substrate-binding protein, at 261,164 to 262,744
_RS10240
EX31_RS10245: EX31_RS10245 - D-alanyl-D-alanine dipeptidase, at 262,792 to 263,373
_RS10245
EX31_RS10250: EX31_RS10250 - MurR/RpiR family transcriptional regulator, at 263,402 to 264,274
_RS10250
Position (kb) 262
263
264 Strain fitness (log2 ratio) -2
-1
0
1
2 at 261.807 kb on + strand, within EX31_RS10240 at 261.877 kb on - strand, within EX31_RS10240 at 261.882 kb on + strand, within EX31_RS10240 at 261.882 kb on + strand, within EX31_RS10240 at 261.882 kb on + strand, within EX31_RS10240 at 261.883 kb on - strand, within EX31_RS10240 at 261.883 kb on - strand, within EX31_RS10240 at 261.883 kb on - strand, within EX31_RS10240 at 261.883 kb on - strand, within EX31_RS10240 at 262.144 kb on + strand, within EX31_RS10240 at 262.144 kb on + strand, within EX31_RS10240 at 262.144 kb on + strand, within EX31_RS10240 at 262.166 kb on - strand, within EX31_RS10240 at 262.237 kb on - strand, within EX31_RS10240 at 262.517 kb on - strand, within EX31_RS10240 at 262.537 kb on - strand, within EX31_RS10240 at 262.661 kb on + strand at 262.662 kb on - strand at 262.662 kb on - strand at 262.790 kb on - strand at 262.844 kb on + strand at 262.844 kb on + strand at 262.938 kb on + strand, within EX31_RS10245 at 262.947 kb on + strand, within EX31_RS10245 at 262.947 kb on + strand, within EX31_RS10245 at 262.948 kb on - strand, within EX31_RS10245 at 262.982 kb on - strand, within EX31_RS10245 at 263.102 kb on + strand, within EX31_RS10245 at 263.166 kb on - strand, within EX31_RS10245 at 263.205 kb on + strand, within EX31_RS10245 at 263.206 kb on - strand, within EX31_RS10245 at 263.297 kb on + strand, within EX31_RS10245 at 263.298 kb on - strand, within EX31_RS10245 at 263.368 kb on - strand at 263.463 kb on - strand at 263.570 kb on + strand, within EX31_RS10250 at 263.571 kb on - strand, within EX31_RS10250 at 263.571 kb on - strand, within EX31_RS10250 at 263.604 kb on + strand, within EX31_RS10250 at 263.605 kb on - strand, within EX31_RS10250 at 263.706 kb on + strand, within EX31_RS10250 at 263.706 kb on + strand, within EX31_RS10250 at 263.707 kb on - strand, within EX31_RS10250 at 263.742 kb on + strand, within EX31_RS10250 at 263.742 kb on + strand, within EX31_RS10250 at 263.742 kb on + strand, within EX31_RS10250 at 263.742 kb on + strand, within EX31_RS10250 at 263.742 kb on + strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.743 kb on - strand, within EX31_RS10250 at 263.788 kb on - strand, within EX31_RS10250 at 263.913 kb on + strand, within EX31_RS10250 at 264.328 kb on - strand at 264.328 kb on - strand at 264.359 kb on - strand at 264.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM remove 261,807 + EX31_RS10240 0.41 -1.4 261,877 - EX31_RS10240 0.45 +0.6 261,882 + EX31_RS10240 0.45 +1.2 261,882 + EX31_RS10240 0.45 -0.4 261,882 + EX31_RS10240 0.45 -0.7 261,883 - EX31_RS10240 0.45 +0.7 261,883 - EX31_RS10240 0.45 -2.5 261,883 - EX31_RS10240 0.45 -1.1 261,883 - EX31_RS10240 0.45 +1.1 262,144 + EX31_RS10240 0.62 +0.5 262,144 + EX31_RS10240 0.62 +1.8 262,144 + EX31_RS10240 0.62 -0.3 262,166 - EX31_RS10240 0.63 +0.6 262,237 - EX31_RS10240 0.68 -0.8 262,517 - EX31_RS10240 0.86 -0.4 262,537 - EX31_RS10240 0.87 -1.4 262,661 + -0.9 262,662 - -0.9 262,662 - +1.0 262,790 - -2.0 262,844 + +1.2 262,844 + +2.0 262,938 + EX31_RS10245 0.25 -0.0 262,947 + EX31_RS10245 0.27 -0.7 262,947 + EX31_RS10245 0.27 +0.2 262,948 - EX31_RS10245 0.27 -0.3 262,982 - EX31_RS10245 0.33 -0.1 263,102 + EX31_RS10245 0.53 -0.6 263,166 - EX31_RS10245 0.64 -0.9 263,205 + EX31_RS10245 0.71 -1.2 263,206 - EX31_RS10245 0.71 +0.6 263,297 + EX31_RS10245 0.87 -1.9 263,298 - EX31_RS10245 0.87 -0.4 263,368 - -0.4 263,463 - -1.0 263,570 + EX31_RS10250 0.19 -0.8 263,571 - EX31_RS10250 0.19 -0.6 263,571 - EX31_RS10250 0.19 +0.7 263,604 + EX31_RS10250 0.23 +0.4 263,605 - EX31_RS10250 0.23 -0.4 263,706 + EX31_RS10250 0.35 +0.1 263,706 + EX31_RS10250 0.35 -1.2 263,707 - EX31_RS10250 0.35 -0.0 263,742 + EX31_RS10250 0.39 -0.8 263,742 + EX31_RS10250 0.39 -0.2 263,742 + EX31_RS10250 0.39 -0.2 263,742 + EX31_RS10250 0.39 +1.2 263,742 + EX31_RS10250 0.39 +0.5 263,743 - EX31_RS10250 0.39 -0.6 263,743 - EX31_RS10250 0.39 +0.4 263,743 - EX31_RS10250 0.39 +0.1 263,743 - EX31_RS10250 0.39 -1.1 263,743 - EX31_RS10250 0.39 +0.4 263,743 - EX31_RS10250 0.39 -0.0 263,743 - EX31_RS10250 0.39 +0.7 263,743 - EX31_RS10250 0.39 -0.7 263,743 - EX31_RS10250 0.39 -0.1 263,788 - EX31_RS10250 0.44 +0.1 263,913 + EX31_RS10250 0.59 -0.3 264,328 - +1.1 264,328 - +1.6 264,359 - +0.5 264,359 - -0.1
Or see this region's nucleotide sequence