Experiment: NL-CCM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03130 and EX31_RS03135 are separated by 56 nucleotides EX31_RS03135 and EX31_RS03140 are separated by 108 nucleotides EX31_RS03140 and EX31_RS03145 are separated by 137 nucleotides
EX31_RS03130: EX31_RS03130 - spore coat U domain-containing protein, at 110,020 to 110,988
_RS03130
EX31_RS03135: EX31_RS03135 - cold shock domain-containing protein, at 111,045 to 111,524
_RS03135
EX31_RS03140: EX31_RS03140 - DNA oxidative demethylase AlkB, at 111,633 to 112,286
_RS03140
EX31_RS03145: EX31_RS03145 - shikimate 5-dehydrogenase, at 112,424 to 113,242
_RS03145
Position (kb) 111
112
113 Strain fitness (log2 ratio) -2
-1
0
1
2 at 110.694 kb on + strand, within EX31_RS03130 at 110.694 kb on + strand, within EX31_RS03130 at 110.694 kb on + strand, within EX31_RS03130 at 110.694 kb on + strand, within EX31_RS03130 at 110.695 kb on - strand, within EX31_RS03130 at 110.695 kb on - strand, within EX31_RS03130 at 110.698 kb on - strand, within EX31_RS03130 at 110.698 kb on - strand, within EX31_RS03130 at 110.698 kb on - strand, within EX31_RS03130 at 110.706 kb on - strand, within EX31_RS03130 at 110.729 kb on - strand, within EX31_RS03130 at 110.729 kb on - strand, within EX31_RS03130 at 110.829 kb on + strand, within EX31_RS03130 at 110.830 kb on - strand, within EX31_RS03130 at 110.905 kb on + strand at 110.905 kb on + strand at 110.905 kb on + strand at 110.906 kb on - strand at 110.906 kb on - strand at 110.906 kb on - strand at 110.907 kb on + strand at 110.907 kb on + strand at 110.907 kb on + strand at 110.908 kb on - strand at 110.908 kb on - strand at 110.919 kb on - strand at 110.919 kb on - strand at 110.949 kb on + strand at 110.949 kb on + strand at 110.950 kb on - strand at 110.950 kb on - strand at 110.953 kb on + strand at 110.953 kb on + strand at 110.953 kb on + strand at 110.953 kb on + strand at 110.953 kb on + strand at 110.954 kb on - strand at 110.954 kb on - strand at 110.954 kb on - strand at 110.954 kb on - strand at 110.954 kb on - strand at 110.954 kb on - strand at 110.954 kb on - strand at 110.954 kb on - strand at 110.954 kb on - strand at 110.983 kb on + strand at 110.983 kb on + strand at 110.983 kb on + strand at 110.983 kb on + strand at 110.984 kb on - strand at 110.984 kb on - strand at 110.984 kb on - strand at 110.984 kb on - strand at 110.984 kb on - strand at 110.984 kb on - strand at 110.984 kb on - strand at 110.984 kb on - strand at 110.984 kb on - strand at 111.046 kb on + strand at 111.047 kb on - strand at 111.047 kb on - strand at 111.106 kb on + strand, within EX31_RS03135 at 111.106 kb on + strand, within EX31_RS03135 at 111.106 kb on + strand, within EX31_RS03135 at 111.106 kb on + strand, within EX31_RS03135 at 111.106 kb on + strand, within EX31_RS03135 at 111.106 kb on + strand, within EX31_RS03135 at 111.106 kb on + strand, within EX31_RS03135 at 111.106 kb on + strand, within EX31_RS03135 at 111.106 kb on + strand, within EX31_RS03135 at 111.106 kb on + strand, within EX31_RS03135 at 111.106 kb on + strand, within EX31_RS03135 at 111.106 kb on + strand, within EX31_RS03135 at 111.106 kb on + strand, within EX31_RS03135 at 111.106 kb on + strand, within EX31_RS03135 at 111.106 kb on + strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.107 kb on - strand, within EX31_RS03135 at 111.188 kb on + strand, within EX31_RS03135 at 111.300 kb on - strand, within EX31_RS03135 at 111.314 kb on + strand, within EX31_RS03135 at 111.314 kb on + strand, within EX31_RS03135 at 111.315 kb on - strand, within EX31_RS03135 at 111.322 kb on + strand, within EX31_RS03135 at 111.322 kb on + strand, within EX31_RS03135 at 111.322 kb on + strand, within EX31_RS03135 at 111.322 kb on + strand, within EX31_RS03135 at 111.322 kb on + strand, within EX31_RS03135 at 111.322 kb on + strand, within EX31_RS03135 at 111.322 kb on + strand, within EX31_RS03135 at 111.322 kb on + strand, within EX31_RS03135 at 111.323 kb on - strand, within EX31_RS03135 at 111.323 kb on - strand, within EX31_RS03135 at 111.323 kb on - strand, within EX31_RS03135 at 111.323 kb on - strand, within EX31_RS03135 at 111.323 kb on - strand, within EX31_RS03135 at 111.323 kb on - strand, within EX31_RS03135 at 111.323 kb on - strand, within EX31_RS03135 at 111.411 kb on - strand, within EX31_RS03135 at 111.435 kb on - strand, within EX31_RS03135 at 111.435 kb on - strand, within EX31_RS03135 at 111.449 kb on - strand, within EX31_RS03135 at 111.476 kb on + strand, within EX31_RS03135 at 111.513 kb on + strand at 111.514 kb on - strand at 111.537 kb on - strand at 111.540 kb on + strand at 111.541 kb on - strand at 111.544 kb on + strand at 111.544 kb on + strand at 111.544 kb on + strand at 111.544 kb on + strand at 111.544 kb on + strand at 111.544 kb on + strand at 111.545 kb on - strand at 111.545 kb on - strand at 111.548 kb on + strand at 111.548 kb on + strand at 111.548 kb on + strand at 111.582 kb on - strand at 111.582 kb on - strand at 111.613 kb on - strand at 111.634 kb on + strand at 111.635 kb on - strand at 111.635 kb on - strand at 111.653 kb on + strand at 111.653 kb on + strand at 111.653 kb on + strand at 111.653 kb on + strand at 111.653 kb on + strand at 111.653 kb on + strand at 111.653 kb on + strand at 111.653 kb on + strand at 111.654 kb on - strand at 111.654 kb on - strand at 111.654 kb on - strand at 111.654 kb on - strand at 111.654 kb on - strand at 111.654 kb on - strand at 111.654 kb on - strand at 111.708 kb on + strand, within EX31_RS03140 at 111.708 kb on + strand, within EX31_RS03140 at 111.709 kb on - strand, within EX31_RS03140 at 111.786 kb on - strand, within EX31_RS03140 at 112.212 kb on + strand, within EX31_RS03140 at 112.213 kb on - strand, within EX31_RS03140 at 112.287 kb on - strand at 112.287 kb on - strand at 112.313 kb on + strand at 112.314 kb on - strand at 112.314 kb on - strand at 112.314 kb on - strand at 112.314 kb on - strand at 112.317 kb on + strand at 112.317 kb on + strand at 112.318 kb on - strand at 112.318 kb on - strand at 112.319 kb on + strand at 112.319 kb on + strand at 112.319 kb on + strand at 112.319 kb on + strand at 112.320 kb on - strand at 112.320 kb on - strand at 112.320 kb on - strand at 112.369 kb on + strand at 112.369 kb on + strand at 112.370 kb on - strand at 112.370 kb on - strand at 112.379 kb on + strand at 112.379 kb on + strand at 112.379 kb on + strand at 112.379 kb on + strand at 112.380 kb on - strand at 112.380 kb on - strand at 112.380 kb on - strand at 112.380 kb on - strand at 112.380 kb on - strand at 112.409 kb on + strand at 112.409 kb on + strand at 112.409 kb on + strand at 112.409 kb on + strand at 112.409 kb on + strand at 112.409 kb on + strand at 112.410 kb on - strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.459 kb on + strand at 112.460 kb on - strand at 112.460 kb on - strand at 112.460 kb on - strand at 112.460 kb on - strand at 112.460 kb on - strand at 112.504 kb on + strand at 112.505 kb on - strand at 112.514 kb on + strand, within EX31_RS03145 at 112.588 kb on - strand, within EX31_RS03145 at 112.697 kb on - strand, within EX31_RS03145 at 112.697 kb on - strand, within EX31_RS03145 at 112.697 kb on - strand, within EX31_RS03145 at 112.719 kb on + strand, within EX31_RS03145 at 112.719 kb on + strand, within EX31_RS03145 at 112.730 kb on + strand, within EX31_RS03145 at 112.730 kb on + strand, within EX31_RS03145 at 112.730 kb on + strand, within EX31_RS03145 at 112.730 kb on + strand, within EX31_RS03145 at 112.731 kb on - strand, within EX31_RS03145 at 112.731 kb on - strand, within EX31_RS03145 at 112.742 kb on + strand, within EX31_RS03145 at 112.742 kb on + strand, within EX31_RS03145 at 112.742 kb on + strand, within EX31_RS03145 at 112.742 kb on + strand, within EX31_RS03145 at 112.742 kb on + strand, within EX31_RS03145 at 112.743 kb on - strand, within EX31_RS03145 at 112.743 kb on - strand, within EX31_RS03145 at 112.743 kb on - strand, within EX31_RS03145 at 112.871 kb on + strand, within EX31_RS03145 at 112.871 kb on + strand, within EX31_RS03145 at 112.872 kb on - strand, within EX31_RS03145 at 112.872 kb on - strand, within EX31_RS03145 at 112.920 kb on - strand, within EX31_RS03145 at 113.180 kb on + strand at 113.180 kb on + strand at 113.180 kb on + strand at 113.180 kb on + strand at 113.180 kb on + strand at 113.180 kb on + strand at 113.180 kb on + strand at 113.181 kb on - strand at 113.181 kb on - strand at 113.181 kb on - strand at 113.191 kb on - strand at 113.211 kb on + strand at 113.211 kb on + strand at 113.211 kb on + strand at 113.211 kb on + strand at 113.212 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM remove 110,694 + EX31_RS03130 0.70 +0.8 110,694 + EX31_RS03130 0.70 +0.7 110,694 + EX31_RS03130 0.70 +1.1 110,694 + EX31_RS03130 0.70 +0.6 110,695 - EX31_RS03130 0.70 -0.7 110,695 - EX31_RS03130 0.70 +0.1 110,698 - EX31_RS03130 0.70 +0.2 110,698 - EX31_RS03130 0.70 +0.7 110,698 - EX31_RS03130 0.70 +0.0 110,706 - EX31_RS03130 0.71 +0.9 110,729 - EX31_RS03130 0.73 +0.3 110,729 - EX31_RS03130 0.73 -0.2 110,829 + EX31_RS03130 0.83 -0.2 110,830 - EX31_RS03130 0.84 +0.7 110,905 + -1.1 110,905 + +0.1 110,905 + +0.9 110,906 - +0.0 110,906 - -0.3 110,906 - -0.2 110,907 + -0.3 110,907 + -0.1 110,907 + +0.1 110,908 - -0.2 110,908 - -0.0 110,919 - -0.2 110,919 - +0.0 110,949 + -0.9 110,949 + +0.5 110,950 - +0.5 110,950 - +0.1 110,953 + +0.6 110,953 + -0.3 110,953 + +0.5 110,953 + +0.8 110,953 + -0.0 110,954 - +0.2 110,954 - +0.3 110,954 - +0.4 110,954 - -1.0 110,954 - -0.5 110,954 - +0.4 110,954 - +0.1 110,954 - -0.0 110,954 - +0.9 110,983 + -1.3 110,983 + -0.3 110,983 + +0.1 110,983 + +0.1 110,984 - +0.6 110,984 - -0.1 110,984 - -0.6 110,984 - -0.4 110,984 - -0.7 110,984 - +0.5 110,984 - +0.9 110,984 - -0.5 110,984 - -0.0 111,046 + -0.1 111,047 - -0.3 111,047 - -0.7 111,106 + EX31_RS03135 0.13 -0.1 111,106 + EX31_RS03135 0.13 +0.0 111,106 + EX31_RS03135 0.13 -0.4 111,106 + EX31_RS03135 0.13 -0.1 111,106 + EX31_RS03135 0.13 +0.7 111,106 + EX31_RS03135 0.13 -0.4 111,106 + EX31_RS03135 0.13 -1.5 111,106 + EX31_RS03135 0.13 +0.2 111,106 + EX31_RS03135 0.13 +0.3 111,106 + EX31_RS03135 0.13 -1.7 111,106 + EX31_RS03135 0.13 +0.6 111,106 + EX31_RS03135 0.13 -0.3 111,106 + EX31_RS03135 0.13 -1.6 111,106 + EX31_RS03135 0.13 +0.4 111,106 + EX31_RS03135 0.13 +1.0 111,107 - EX31_RS03135 0.13 -0.3 111,107 - EX31_RS03135 0.13 -0.4 111,107 - EX31_RS03135 0.13 +0.2 111,107 - EX31_RS03135 0.13 -0.5 111,107 - EX31_RS03135 0.13 -0.0 111,107 - EX31_RS03135 0.13 -1.1 111,107 - EX31_RS03135 0.13 +0.0 111,107 - EX31_RS03135 0.13 -0.3 111,107 - EX31_RS03135 0.13 +0.8 111,107 - EX31_RS03135 0.13 -0.3 111,107 - EX31_RS03135 0.13 -0.4 111,107 - EX31_RS03135 0.13 +0.7 111,107 - EX31_RS03135 0.13 +0.2 111,107 - EX31_RS03135 0.13 +2.5 111,107 - EX31_RS03135 0.13 -0.2 111,107 - EX31_RS03135 0.13 +0.3 111,107 - EX31_RS03135 0.13 -0.6 111,107 - EX31_RS03135 0.13 -0.9 111,107 - EX31_RS03135 0.13 -0.1 111,107 - EX31_RS03135 0.13 -0.2 111,107 - EX31_RS03135 0.13 -0.1 111,188 + EX31_RS03135 0.30 +0.2 111,300 - EX31_RS03135 0.53 -0.3 111,314 + EX31_RS03135 0.56 -0.4 111,314 + EX31_RS03135 0.56 -0.5 111,315 - EX31_RS03135 0.56 +0.5 111,322 + EX31_RS03135 0.58 -0.6 111,322 + EX31_RS03135 0.58 -0.6 111,322 + EX31_RS03135 0.58 -0.5 111,322 + EX31_RS03135 0.58 -0.8 111,322 + EX31_RS03135 0.58 +0.2 111,322 + EX31_RS03135 0.58 -0.3 111,322 + EX31_RS03135 0.58 -1.5 111,322 + EX31_RS03135 0.58 -0.9 111,323 - EX31_RS03135 0.58 +0.4 111,323 - EX31_RS03135 0.58 +0.3 111,323 - EX31_RS03135 0.58 +0.6 111,323 - EX31_RS03135 0.58 +0.7 111,323 - EX31_RS03135 0.58 +0.5 111,323 - EX31_RS03135 0.58 -0.7 111,323 - EX31_RS03135 0.58 -0.2 111,411 - EX31_RS03135 0.76 -0.4 111,435 - EX31_RS03135 0.81 +0.2 111,435 - EX31_RS03135 0.81 -0.1 111,449 - EX31_RS03135 0.84 +0.1 111,476 + EX31_RS03135 0.90 -0.7 111,513 + -0.4 111,514 - -0.4 111,537 - +0.2 111,540 + +0.0 111,541 - +0.1 111,544 + +0.7 111,544 + -0.8 111,544 + +0.4 111,544 + -0.2 111,544 + -0.2 111,544 + +0.5 111,545 - +0.2 111,545 - +0.0 111,548 + +0.1 111,548 + +1.0 111,548 + +0.7 111,582 - +1.0 111,582 - -0.3 111,613 - +0.4 111,634 + +0.1 111,635 - +0.8 111,635 - +1.3 111,653 + -0.6 111,653 + +0.8 111,653 + -0.0 111,653 + +0.1 111,653 + +0.3 111,653 + +0.2 111,653 + +0.2 111,653 + -0.8 111,654 - -1.5 111,654 - -0.5 111,654 - -0.1 111,654 - -0.1 111,654 - -0.0 111,654 - +1.7 111,654 - -0.7 111,708 + EX31_RS03140 0.11 -0.0 111,708 + EX31_RS03140 0.11 -0.1 111,709 - EX31_RS03140 0.12 -1.1 111,786 - EX31_RS03140 0.23 -1.0 112,212 + EX31_RS03140 0.89 -0.5 112,213 - EX31_RS03140 0.89 -0.2 112,287 - -0.0 112,287 - -0.2 112,313 + +0.4 112,314 - -0.1 112,314 - +0.1 112,314 - -0.1 112,314 - +0.0 112,317 + +0.9 112,317 + -1.0 112,318 - -0.9 112,318 - -0.8 112,319 + +0.6 112,319 + +0.4 112,319 + +0.8 112,319 + -1.5 112,320 - -0.9 112,320 - -0.2 112,320 - +0.5 112,369 + +0.8 112,369 + -1.3 112,370 - -0.9 112,370 - +0.3 112,379 + +1.8 112,379 + -0.4 112,379 + -0.3 112,379 + -0.1 112,380 - +0.5 112,380 - -0.0 112,380 - -0.4 112,380 - +0.4 112,380 - +0.2 112,409 + -1.8 112,409 + +0.1 112,409 + +0.5 112,409 + -0.2 112,409 + -0.1 112,409 + -0.3 112,410 - +0.2 112,459 + -0.2 112,459 + +1.5 112,459 + -0.2 112,459 + +1.1 112,459 + +0.3 112,459 + -0.0 112,459 + +0.1 112,459 + -0.1 112,459 + +0.5 112,459 + +0.4 112,459 + +0.2 112,460 - +0.1 112,460 - -1.1 112,460 - +0.1 112,460 - +0.9 112,460 - -0.2 112,504 + +0.6 112,505 - -0.2 112,514 + EX31_RS03145 0.11 -0.0 112,588 - EX31_RS03145 0.20 +0.9 112,697 - EX31_RS03145 0.33 -0.1 112,697 - EX31_RS03145 0.33 -2.7 112,697 - EX31_RS03145 0.33 +0.0 112,719 + EX31_RS03145 0.36 +0.3 112,719 + EX31_RS03145 0.36 -1.2 112,730 + EX31_RS03145 0.37 -0.1 112,730 + EX31_RS03145 0.37 +0.3 112,730 + EX31_RS03145 0.37 -0.0 112,730 + EX31_RS03145 0.37 +0.3 112,731 - EX31_RS03145 0.37 -0.0 112,731 - EX31_RS03145 0.37 +0.2 112,742 + EX31_RS03145 0.39 -0.0 112,742 + EX31_RS03145 0.39 -0.5 112,742 + EX31_RS03145 0.39 +0.1 112,742 + EX31_RS03145 0.39 +0.1 112,742 + EX31_RS03145 0.39 -0.5 112,743 - EX31_RS03145 0.39 +0.1 112,743 - EX31_RS03145 0.39 -0.1 112,743 - EX31_RS03145 0.39 +1.2 112,871 + EX31_RS03145 0.55 -0.6 112,871 + EX31_RS03145 0.55 -0.5 112,872 - EX31_RS03145 0.55 +0.1 112,872 - EX31_RS03145 0.55 -0.3 112,920 - EX31_RS03145 0.61 +0.2 113,180 + +1.2 113,180 + -0.2 113,180 + +0.0 113,180 + -0.4 113,180 + -0.2 113,180 + -0.4 113,180 + -0.7 113,181 - +0.5 113,181 - -1.0 113,181 - -0.7 113,191 - -0.5 113,211 + +0.3 113,211 + +0.5 113,211 + +0.2 113,211 + -0.2 113,212 - +0.7
Or see this region's nucleotide sequence