Strain Fitness in Rahnella sp. WP5 around EX31_RS01220

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01215 and EX31_RS01220 are separated by 262 nucleotidesEX31_RS01220 and EX31_RS01225 are separated by 69 nucleotidesEX31_RS01225 and EX31_RS01230 are separated by 51 nucleotides EX31_RS01215: EX31_RS01215 - ABC transporter substrate-binding protein, at 269,859 to 270,950 _RS01215 EX31_RS01220: EX31_RS01220 - peptide MFS transporter, at 271,213 to 272,766 _RS01220 EX31_RS01225: EX31_RS01225 - glutaredoxin-dependent arsenate reductase, at 272,836 to 273,267 _RS01225 EX31_RS01230: EX31_RS01230 - arsenic transporter, at 273,319 to 274,608 _RS01230 Position (kb) 271 272 273Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 270.237 kb on - strand, within EX31_RS01215at 270.368 kb on + strand, within EX31_RS01215at 270.369 kb on - strand, within EX31_RS01215at 270.378 kb on + strand, within EX31_RS01215at 270.389 kb on + strand, within EX31_RS01215at 270.389 kb on + strand, within EX31_RS01215at 270.390 kb on - strand, within EX31_RS01215at 270.390 kb on - strand, within EX31_RS01215at 270.390 kb on - strand, within EX31_RS01215at 270.454 kb on + strand, within EX31_RS01215at 270.454 kb on + strand, within EX31_RS01215at 270.454 kb on + strand, within EX31_RS01215at 270.455 kb on - strand, within EX31_RS01215at 270.455 kb on - strand, within EX31_RS01215at 270.539 kb on + strand, within EX31_RS01215at 270.540 kb on - strand, within EX31_RS01215at 270.615 kb on + strand, within EX31_RS01215at 270.677 kb on - strand, within EX31_RS01215at 270.900 kb on + strandat 270.917 kb on + strandat 270.927 kb on + strandat 270.927 kb on + strandat 270.928 kb on - strandat 270.973 kb on - strandat 271.033 kb on + strandat 271.058 kb on - strandat 271.058 kb on - strandat 271.122 kb on + strandat 271.140 kb on + strandat 271.187 kb on + strandat 271.212 kb on + strandat 271.213 kb on - strandat 271.231 kb on - strandat 271.361 kb on - strandat 271.361 kb on - strandat 271.401 kb on + strand, within EX31_RS01220at 271.401 kb on + strand, within EX31_RS01220at 271.401 kb on + strand, within EX31_RS01220at 271.410 kb on + strand, within EX31_RS01220at 271.411 kb on - strand, within EX31_RS01220at 271.412 kb on + strand, within EX31_RS01220at 271.412 kb on + strand, within EX31_RS01220at 271.412 kb on + strand, within EX31_RS01220at 271.412 kb on + strand, within EX31_RS01220at 271.413 kb on - strand, within EX31_RS01220at 271.425 kb on + strand, within EX31_RS01220at 271.425 kb on + strand, within EX31_RS01220at 271.425 kb on + strand, within EX31_RS01220at 271.425 kb on + strand, within EX31_RS01220at 271.425 kb on + strand, within EX31_RS01220at 271.425 kb on + strand, within EX31_RS01220at 271.426 kb on - strand, within EX31_RS01220at 271.426 kb on - strand, within EX31_RS01220at 271.426 kb on - strand, within EX31_RS01220at 271.426 kb on - strand, within EX31_RS01220at 271.429 kb on + strand, within EX31_RS01220at 271.429 kb on + strand, within EX31_RS01220at 271.429 kb on + strand, within EX31_RS01220at 271.429 kb on + strand, within EX31_RS01220at 271.430 kb on - strand, within EX31_RS01220at 271.430 kb on - strand, within EX31_RS01220at 271.430 kb on - strand, within EX31_RS01220at 271.430 kb on - strand, within EX31_RS01220at 271.464 kb on + strand, within EX31_RS01220at 271.465 kb on - strand, within EX31_RS01220at 271.465 kb on - strand, within EX31_RS01220at 271.584 kb on + strand, within EX31_RS01220at 271.585 kb on - strand, within EX31_RS01220at 271.644 kb on + strand, within EX31_RS01220at 271.687 kb on + strand, within EX31_RS01220at 271.687 kb on + strand, within EX31_RS01220at 271.688 kb on - strand, within EX31_RS01220at 271.699 kb on - strand, within EX31_RS01220at 271.789 kb on - strand, within EX31_RS01220at 271.806 kb on + strand, within EX31_RS01220at 271.806 kb on + strand, within EX31_RS01220at 271.843 kb on + strand, within EX31_RS01220at 271.890 kb on + strand, within EX31_RS01220at 272.011 kb on + strand, within EX31_RS01220at 272.012 kb on - strand, within EX31_RS01220at 272.043 kb on + strand, within EX31_RS01220at 272.044 kb on - strand, within EX31_RS01220at 272.047 kb on + strand, within EX31_RS01220at 272.047 kb on + strand, within EX31_RS01220at 272.185 kb on + strand, within EX31_RS01220at 272.186 kb on - strand, within EX31_RS01220at 272.253 kb on + strand, within EX31_RS01220at 272.423 kb on + strand, within EX31_RS01220at 272.606 kb on + strand, within EX31_RS01220at 272.606 kb on + strand, within EX31_RS01220at 272.606 kb on + strand, within EX31_RS01220at 272.606 kb on + strand, within EX31_RS01220at 272.607 kb on - strand, within EX31_RS01220at 272.607 kb on - strand, within EX31_RS01220at 272.625 kb on + strandat 272.626 kb on - strandat 272.733 kb on + strandat 272.734 kb on - strandat 272.848 kb on + strandat 272.851 kb on - strandat 272.851 kb on - strandat 272.851 kb on - strandat 272.851 kb on - strandat 272.933 kb on - strand, within EX31_RS01225at 272.933 kb on - strand, within EX31_RS01225at 272.933 kb on - strand, within EX31_RS01225at 272.933 kb on - strand, within EX31_RS01225at 272.953 kb on + strand, within EX31_RS01225at 273.071 kb on + strand, within EX31_RS01225at 273.259 kb on - strandat 273.291 kb on + strandat 273.292 kb on - strandat 273.321 kb on - strandat 273.404 kb on + strandat 273.404 kb on + strandat 273.408 kb on - strandat 273.408 kb on - strandat 273.426 kb on + strandat 273.426 kb on + strandat 273.426 kb on + strandat 273.455 kb on - strand, within EX31_RS01230at 273.521 kb on + strand, within EX31_RS01230at 273.522 kb on - strand, within EX31_RS01230at 273.522 kb on - strand, within EX31_RS01230at 273.568 kb on - strand, within EX31_RS01230at 273.598 kb on - strand, within EX31_RS01230at 273.649 kb on - strand, within EX31_RS01230at 273.658 kb on + strand, within EX31_RS01230at 273.658 kb on + strand, within EX31_RS01230at 273.729 kb on - strand, within EX31_RS01230at 273.740 kb on + strand, within EX31_RS01230at 273.740 kb on + strand, within EX31_RS01230at 273.740 kb on + strand, within EX31_RS01230at 273.740 kb on + strand, within EX31_RS01230at 273.741 kb on - strand, within EX31_RS01230at 273.741 kb on - strand, within EX31_RS01230at 273.741 kb on - strand, within EX31_RS01230at 273.741 kb on - strand, within EX31_RS01230

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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270,237 - EX31_RS01215 0.35 +1.8
270,368 + EX31_RS01215 0.47 +0.3
270,369 - EX31_RS01215 0.47 -1.5
270,378 + EX31_RS01215 0.48 +0.1
270,389 + EX31_RS01215 0.49 -0.8
270,389 + EX31_RS01215 0.49 +0.2
270,390 - EX31_RS01215 0.49 +0.1
270,390 - EX31_RS01215 0.49 -0.9
270,390 - EX31_RS01215 0.49 +0.9
270,454 + EX31_RS01215 0.54 +1.0
270,454 + EX31_RS01215 0.54 -0.2
270,454 + EX31_RS01215 0.54 -0.9
270,455 - EX31_RS01215 0.55 +0.6
270,455 - EX31_RS01215 0.55 -1.4
270,539 + EX31_RS01215 0.62 -1.6
270,540 - EX31_RS01215 0.62 -2.0
270,615 + EX31_RS01215 0.69 -1.0
270,677 - EX31_RS01215 0.75 +0.9
270,900 + +0.3
270,917 + +1.5
270,927 + +0.4
270,927 + -0.8
270,928 - +0.7
270,973 - -0.1
271,033 + +1.0
271,058 - -0.1
271,058 - +0.9
271,122 + -0.3
271,140 + -0.6
271,187 + -1.5
271,212 + -0.5
271,213 - +1.6
271,231 - -0.4
271,361 - -1.4
271,361 - -2.9
271,401 + EX31_RS01220 0.12 +0.7
271,401 + EX31_RS01220 0.12 +1.2
271,401 + EX31_RS01220 0.12 +0.8
271,410 + EX31_RS01220 0.13 -0.6
271,411 - EX31_RS01220 0.13 +0.0
271,412 + EX31_RS01220 0.13 -1.4
271,412 + EX31_RS01220 0.13 -0.2
271,412 + EX31_RS01220 0.13 -0.1
271,412 + EX31_RS01220 0.13 -2.0
271,413 - EX31_RS01220 0.13 +0.2
271,425 + EX31_RS01220 0.14 -0.5
271,425 + EX31_RS01220 0.14 +0.1
271,425 + EX31_RS01220 0.14 -0.4
271,425 + EX31_RS01220 0.14 +0.2
271,425 + EX31_RS01220 0.14 -0.6
271,425 + EX31_RS01220 0.14 +0.6
271,426 - EX31_RS01220 0.14 -0.2
271,426 - EX31_RS01220 0.14 -0.6
271,426 - EX31_RS01220 0.14 +0.6
271,426 - EX31_RS01220 0.14 -0.1
271,429 + EX31_RS01220 0.14 +1.3
271,429 + EX31_RS01220 0.14 -0.2
271,429 + EX31_RS01220 0.14 +0.2
271,429 + EX31_RS01220 0.14 +1.5
271,430 - EX31_RS01220 0.14 +0.7
271,430 - EX31_RS01220 0.14 +0.2
271,430 - EX31_RS01220 0.14 -1.8
271,430 - EX31_RS01220 0.14 -0.0
271,464 + EX31_RS01220 0.16 -0.1
271,465 - EX31_RS01220 0.16 -1.7
271,465 - EX31_RS01220 0.16 -1.1
271,584 + EX31_RS01220 0.24 -0.8
271,585 - EX31_RS01220 0.24 +0.3
271,644 + EX31_RS01220 0.28 +1.4
271,687 + EX31_RS01220 0.31 -0.9
271,687 + EX31_RS01220 0.31 -1.5
271,688 - EX31_RS01220 0.31 +0.1
271,699 - EX31_RS01220 0.31 -0.5
271,789 - EX31_RS01220 0.37 +0.8
271,806 + EX31_RS01220 0.38 +0.4
271,806 + EX31_RS01220 0.38 +1.3
271,843 + EX31_RS01220 0.41 +2.1
271,890 + EX31_RS01220 0.44 +1.2
272,011 + EX31_RS01220 0.51 -0.1
272,012 - EX31_RS01220 0.51 -0.0
272,043 + EX31_RS01220 0.53 -0.7
272,044 - EX31_RS01220 0.53 +1.5
272,047 + EX31_RS01220 0.54 -0.3
272,047 + EX31_RS01220 0.54 -0.8
272,185 + EX31_RS01220 0.63 +0.1
272,186 - EX31_RS01220 0.63 -0.9
272,253 + EX31_RS01220 0.67 +0.2
272,423 + EX31_RS01220 0.78 +1.0
272,606 + EX31_RS01220 0.90 +1.4
272,606 + EX31_RS01220 0.90 -0.3
272,606 + EX31_RS01220 0.90 -0.1
272,606 + EX31_RS01220 0.90 +0.1
272,607 - EX31_RS01220 0.90 -0.8
272,607 - EX31_RS01220 0.90 -1.1
272,625 + -0.0
272,626 - -1.9
272,733 + -0.3
272,734 - +0.6
272,848 + +0.4
272,851 - +1.0
272,851 - +0.8
272,851 - +0.1
272,851 - +0.3
272,933 - EX31_RS01225 0.22 -0.9
272,933 - EX31_RS01225 0.22 +0.2
272,933 - EX31_RS01225 0.22 +0.3
272,933 - EX31_RS01225 0.22 +1.4
272,953 + EX31_RS01225 0.27 -0.7
273,071 + EX31_RS01225 0.54 +1.3
273,259 - -0.7
273,291 + +0.1
273,292 - -0.4
273,321 - -1.9
273,404 + -0.9
273,404 + +0.2
273,408 - +0.3
273,408 - -0.6
273,426 + -2.1
273,426 + -1.9
273,426 + -0.7
273,455 - EX31_RS01230 0.11 -0.3
273,521 + EX31_RS01230 0.16 +0.6
273,522 - EX31_RS01230 0.16 -0.5
273,522 - EX31_RS01230 0.16 -0.0
273,568 - EX31_RS01230 0.19 -1.4
273,598 - EX31_RS01230 0.22 +0.9
273,649 - EX31_RS01230 0.26 -0.8
273,658 + EX31_RS01230 0.26 -1.3
273,658 + EX31_RS01230 0.26 +1.5
273,729 - EX31_RS01230 0.32 -0.4
273,740 + EX31_RS01230 0.33 +0.4
273,740 + EX31_RS01230 0.33 +1.1
273,740 + EX31_RS01230 0.33 +0.1
273,740 + EX31_RS01230 0.33 -0.6
273,741 - EX31_RS01230 0.33 +0.4
273,741 - EX31_RS01230 0.33 +1.1
273,741 - EX31_RS01230 0.33 -0.9
273,741 - EX31_RS01230 0.33 +1.4

Or see this region's nucleotide sequence