Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15590 and EX31_RS15595 are separated by 11 nucleotides EX31_RS15595 and EX31_RS15600 are separated by 249 nucleotides
EX31_RS15590: EX31_RS15590 - methionine ABC transporter ATP-binding protein, at 13,169 to 14,323
_RS15590
EX31_RS15595: EX31_RS15595 - MetQ/NlpA family lipoprotein, at 14,335 to 15,177
_RS15595
EX31_RS15600: EX31_RS15600 - phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase, at 15,427 to 17,733
_RS15600
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 13.371 kb on - strand, within EX31_RS15590 at 13.410 kb on + strand, within EX31_RS15590 at 13.411 kb on - strand, within EX31_RS15590 at 13.475 kb on + strand, within EX31_RS15590 at 13.476 kb on - strand, within EX31_RS15590 at 13.484 kb on + strand, within EX31_RS15590 at 13.565 kb on - strand, within EX31_RS15590 at 14.174 kb on + strand, within EX31_RS15590 at 14.174 kb on + strand, within EX31_RS15590 at 14.174 kb on + strand, within EX31_RS15590 at 14.174 kb on + strand, within EX31_RS15590 at 14.174 kb on + strand, within EX31_RS15590 at 14.174 kb on + strand, within EX31_RS15590 at 14.174 kb on + strand, within EX31_RS15590 at 14.174 kb on + strand, within EX31_RS15590 at 14.174 kb on + strand, within EX31_RS15590 at 14.174 kb on + strand, within EX31_RS15590 at 14.175 kb on - strand, within EX31_RS15590 at 14.175 kb on - strand, within EX31_RS15590 at 14.175 kb on - strand, within EX31_RS15590 at 14.175 kb on - strand, within EX31_RS15590 at 14.175 kb on - strand, within EX31_RS15590 at 14.328 kb on + strand at 14.328 kb on + strand at 14.328 kb on + strand at 14.329 kb on - strand at 14.329 kb on - strand at 14.329 kb on - strand at 14.329 kb on - strand at 14.361 kb on + strand at 14.361 kb on + strand at 14.362 kb on - strand at 14.363 kb on + strand at 14.363 kb on + strand at 14.363 kb on + strand at 14.363 kb on + strand at 14.364 kb on - strand at 14.364 kb on - strand at 14.364 kb on - strand at 14.364 kb on - strand at 14.364 kb on - strand at 14.364 kb on - strand at 14.471 kb on + strand, within EX31_RS15595 at 14.471 kb on + strand, within EX31_RS15595 at 14.478 kb on + strand, within EX31_RS15595 at 14.479 kb on - strand, within EX31_RS15595 at 14.479 kb on - strand, within EX31_RS15595 at 14.795 kb on + strand, within EX31_RS15595 at 14.940 kb on - strand, within EX31_RS15595 at 15.054 kb on + strand, within EX31_RS15595 at 15.177 kb on + strand at 15.178 kb on - strand at 15.246 kb on - strand at 15.281 kb on - strand at 15.322 kb on + strand at 15.323 kb on - strand at 15.429 kb on - strand at 15.483 kb on + strand at 15.516 kb on + strand at 15.516 kb on + strand at 15.549 kb on + strand at 15.550 kb on - strand at 15.664 kb on - strand, within EX31_RS15600 at 15.805 kb on + strand, within EX31_RS15600 at 15.806 kb on - strand, within EX31_RS15600 at 15.832 kb on - strand, within EX31_RS15600 at 15.855 kb on - strand, within EX31_RS15600 at 15.946 kb on - strand, within EX31_RS15600 at 15.946 kb on - strand, within EX31_RS15600 at 15.946 kb on - strand, within EX31_RS15600 at 16.065 kb on - strand, within EX31_RS15600 at 16.089 kb on + strand, within EX31_RS15600 at 16.139 kb on + strand, within EX31_RS15600 at 16.139 kb on + strand, within EX31_RS15600 at 16.140 kb on - strand, within EX31_RS15600 at 16.140 kb on - strand, within EX31_RS15600 at 16.140 kb on - strand, within EX31_RS15600
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 13,371 - EX31_RS15590 0.17 -1.2 13,410 + EX31_RS15590 0.21 +0.5 13,411 - EX31_RS15590 0.21 +0.2 13,475 + EX31_RS15590 0.26 +1.0 13,476 - EX31_RS15590 0.27 +0.7 13,484 + EX31_RS15590 0.27 +0.7 13,565 - EX31_RS15590 0.34 -0.6 14,174 + EX31_RS15590 0.87 -1.0 14,174 + EX31_RS15590 0.87 +0.4 14,174 + EX31_RS15590 0.87 -0.9 14,174 + EX31_RS15590 0.87 -0.3 14,174 + EX31_RS15590 0.87 +0.6 14,174 + EX31_RS15590 0.87 +0.7 14,174 + EX31_RS15590 0.87 -0.2 14,174 + EX31_RS15590 0.87 -1.1 14,174 + EX31_RS15590 0.87 +1.2 14,174 + EX31_RS15590 0.87 +0.6 14,175 - EX31_RS15590 0.87 +0.2 14,175 - EX31_RS15590 0.87 -0.5 14,175 - EX31_RS15590 0.87 -0.8 14,175 - EX31_RS15590 0.87 +1.0 14,175 - EX31_RS15590 0.87 +1.4 14,328 + -0.0 14,328 + -0.1 14,328 + +1.9 14,329 - -0.7 14,329 - -1.0 14,329 - -0.1 14,329 - +1.2 14,361 + +0.0 14,361 + -0.9 14,362 - +0.4 14,363 + -0.9 14,363 + -0.1 14,363 + -0.0 14,363 + +0.6 14,364 - +0.7 14,364 - -0.8 14,364 - -0.5 14,364 - +1.3 14,364 - -0.2 14,364 - -1.1 14,471 + EX31_RS15595 0.16 -1.8 14,471 + EX31_RS15595 0.16 +0.2 14,478 + EX31_RS15595 0.17 -0.8 14,479 - EX31_RS15595 0.17 -2.0 14,479 - EX31_RS15595 0.17 -0.9 14,795 + EX31_RS15595 0.55 -0.7 14,940 - EX31_RS15595 0.72 +0.6 15,054 + EX31_RS15595 0.85 -0.2 15,177 + -0.6 15,178 - -0.5 15,246 - +0.9 15,281 - +0.7 15,322 + -0.3 15,323 - +0.8 15,429 - -2.8 15,483 + +0.8 15,516 + -0.3 15,516 + -0.7 15,549 + +0.2 15,550 - -0.3 15,664 - EX31_RS15600 0.10 +0.6 15,805 + EX31_RS15600 0.16 +0.5 15,806 - EX31_RS15600 0.16 +0.3 15,832 - EX31_RS15600 0.18 -0.1 15,855 - EX31_RS15600 0.19 +0.6 15,946 - EX31_RS15600 0.22 -1.3 15,946 - EX31_RS15600 0.22 +0.7 15,946 - EX31_RS15600 0.22 -0.6 16,065 - EX31_RS15600 0.28 +1.1 16,089 + EX31_RS15600 0.29 +1.4 16,139 + EX31_RS15600 0.31 -1.9 16,139 + EX31_RS15600 0.31 -0.1 16,140 - EX31_RS15600 0.31 -0.8 16,140 - EX31_RS15600 0.31 -0.3 16,140 - EX31_RS15600 0.31 +0.7
Or see this region's nucleotide sequence