Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5857

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5856 and Pf1N1B4_5857 are separated by 61 nucleotidesPf1N1B4_5857 and Pf1N1B4_5858 are separated by 340 nucleotides Pf1N1B4_5856 - Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109), at 288,849 to 289,880 _5856 Pf1N1B4_5857 - Arginine N-succinyltransferase (EC 2.3.1.109), at 289,942 to 290,976 _5857 Pf1N1B4_5858 - carboxyphosphonoenolpyruvate phosphonomutase, putative, at 291,317 to 292,186 _5858 Position (kb) 289 290 291Strain fitness (log2 ratio) -2 -1 0 1 2at 289.023 kb on + strand, within Pf1N1B4_5856at 289.023 kb on + strand, within Pf1N1B4_5856at 289.024 kb on - strand, within Pf1N1B4_5856at 289.024 kb on - strand, within Pf1N1B4_5856at 289.209 kb on - strand, within Pf1N1B4_5856at 289.209 kb on - strand, within Pf1N1B4_5856at 289.267 kb on + strand, within Pf1N1B4_5856at 289.267 kb on + strand, within Pf1N1B4_5856at 289.267 kb on + strand, within Pf1N1B4_5856at 289.347 kb on + strand, within Pf1N1B4_5856at 289.413 kb on + strandat 289.596 kb on + strand, within Pf1N1B4_5856at 289.596 kb on + strand, within Pf1N1B4_5856at 289.596 kb on + strand, within Pf1N1B4_5856at 289.597 kb on - strand, within Pf1N1B4_5856at 289.597 kb on - strand, within Pf1N1B4_5856at 289.597 kb on - strand, within Pf1N1B4_5856at 289.597 kb on - strand, within Pf1N1B4_5856at 289.597 kb on - strand, within Pf1N1B4_5856at 289.600 kb on + strand, within Pf1N1B4_5856at 289.601 kb on - strand, within Pf1N1B4_5856at 289.601 kb on - strand, within Pf1N1B4_5856at 289.731 kb on + strand, within Pf1N1B4_5856at 289.731 kb on + strand, within Pf1N1B4_5856at 289.732 kb on - strand, within Pf1N1B4_5856at 289.732 kb on - strand, within Pf1N1B4_5856at 289.732 kb on - strand, within Pf1N1B4_5856at 289.916 kb on + strandat 289.916 kb on + strandat 289.916 kb on + strandat 290.057 kb on + strandat 290.260 kb on - strand, within Pf1N1B4_5857at 290.340 kb on + strand, within Pf1N1B4_5857at 290.681 kb on - strand, within Pf1N1B4_5857at 291.153 kb on - strandat 291.153 kb on - strandat 291.247 kb on - strandat 291.302 kb on - strandat 291.317 kb on - strandat 291.350 kb on - strandat 291.383 kb on + strandat 291.931 kb on - strand, within Pf1N1B4_5858at 291.950 kb on + strand, within Pf1N1B4_5858at 291.951 kb on - strand, within Pf1N1B4_5858

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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289,023 + Pf1N1B4_5856 0.17 -1.5
289,023 + Pf1N1B4_5856 0.17 -0.5
289,024 - Pf1N1B4_5856 0.17 -0.3
289,024 - Pf1N1B4_5856 0.17 -0.5
289,209 - Pf1N1B4_5856 0.35 -1.5
289,209 - Pf1N1B4_5856 0.35 -0.0
289,267 + Pf1N1B4_5856 0.41 -1.5
289,267 + Pf1N1B4_5856 0.41 -0.0
289,267 + Pf1N1B4_5856 0.41 -0.0
289,347 + Pf1N1B4_5856 0.48 +1.7
289,413 + -0.5
289,596 + Pf1N1B4_5856 0.72 +0.5
289,596 + Pf1N1B4_5856 0.72 -0.5
289,596 + Pf1N1B4_5856 0.72 +1.1
289,597 - Pf1N1B4_5856 0.72 +0.7
289,597 - Pf1N1B4_5856 0.72 -1.6
289,597 - Pf1N1B4_5856 0.72 +0.5
289,597 - Pf1N1B4_5856 0.72 -1.9
289,597 - Pf1N1B4_5856 0.72 -0.7
289,600 + Pf1N1B4_5856 0.73 -0.5
289,601 - Pf1N1B4_5856 0.73 +1.5
289,601 - Pf1N1B4_5856 0.73 +0.3
289,731 + Pf1N1B4_5856 0.85 +0.3
289,731 + Pf1N1B4_5856 0.85 -1.2
289,732 - Pf1N1B4_5856 0.86 +0.5
289,732 - Pf1N1B4_5856 0.86 +0.4
289,732 - Pf1N1B4_5856 0.86 +0.4
289,916 + +1.4
289,916 + -0.3
289,916 + +1.1
290,057 + +0.5
290,260 - Pf1N1B4_5857 0.31 +0.5
290,340 + Pf1N1B4_5857 0.38 +2.1
290,681 - Pf1N1B4_5857 0.71 +0.1
291,153 - +0.5
291,153 - -1.5
291,247 - +1.7
291,302 - -0.5
291,317 - +1.0
291,350 - +1.7
291,383 + +1.1
291,931 - Pf1N1B4_5858 0.71 +0.9
291,950 + Pf1N1B4_5858 0.73 -0.5
291,951 - Pf1N1B4_5858 0.73 +0.2

Or see this region's nucleotide sequence