Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS24085 and PFLU_RS24090 are separated by 0 nucleotides PFLU_RS24090 and PFLU_RS24095 are separated by 67 nucleotides PFLU_RS24095 and PFLU_RS24100 are separated by 176 nucleotides
PFLU_RS24085: PFLU_RS24085 - Holliday junction branch migration DNA helicase RuvB, at 5,392,499 to 5,393,557
_RS24085
PFLU_RS24090: PFLU_RS24090 - Holliday junction branch migration protein RuvA, at 5,393,558 to 5,394,169
_RS24090
PFLU_RS24095: PFLU_RS24095 - crossover junction endodeoxyribonuclease RuvC, at 5,394,237 to 5,394,761
_RS24095
PFLU_RS24100: PFLU_RS24100 - YebC/PmpR family DNA-binding transcriptional regulator, at 5,394,938 to 5,395,684
_RS24100
Position (kb) 5393
5394
5395 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5392.581 kb on + strand at 5392.581 kb on + strand at 5392.582 kb on - strand at 5392.582 kb on - strand at 5392.626 kb on + strand, within PFLU_RS24085 at 5392.626 kb on + strand, within PFLU_RS24085 at 5392.627 kb on - strand, within PFLU_RS24085 at 5392.627 kb on - strand, within PFLU_RS24085 at 5392.627 kb on - strand, within PFLU_RS24085 at 5392.627 kb on - strand, within PFLU_RS24085 at 5392.751 kb on + strand, within PFLU_RS24085 at 5392.751 kb on + strand, within PFLU_RS24085 at 5392.752 kb on - strand, within PFLU_RS24085 at 5392.752 kb on - strand, within PFLU_RS24085 at 5392.831 kb on + strand, within PFLU_RS24085 at 5392.832 kb on - strand, within PFLU_RS24085 at 5392.832 kb on - strand, within PFLU_RS24085 at 5393.002 kb on + strand, within PFLU_RS24085 at 5393.003 kb on - strand, within PFLU_RS24085 at 5393.003 kb on - strand, within PFLU_RS24085 at 5393.004 kb on + strand, within PFLU_RS24085 at 5393.004 kb on + strand, within PFLU_RS24085 at 5393.004 kb on + strand, within PFLU_RS24085 at 5393.004 kb on + strand, within PFLU_RS24085 at 5393.004 kb on + strand, within PFLU_RS24085 at 5393.005 kb on - strand, within PFLU_RS24085 at 5393.005 kb on - strand, within PFLU_RS24085 at 5393.012 kb on + strand, within PFLU_RS24085 at 5393.013 kb on - strand, within PFLU_RS24085 at 5393.013 kb on - strand, within PFLU_RS24085 at 5393.176 kb on - strand, within PFLU_RS24085 at 5393.222 kb on - strand, within PFLU_RS24085 at 5393.222 kb on - strand, within PFLU_RS24085 at 5393.463 kb on + strand at 5393.464 kb on - strand at 5393.464 kb on - strand at 5393.464 kb on - strand at 5393.464 kb on - strand at 5393.464 kb on - strand at 5393.559 kb on + strand at 5393.559 kb on + strand at 5393.559 kb on + strand at 5393.559 kb on + strand at 5393.560 kb on - strand at 5393.560 kb on - strand at 5393.560 kb on - strand at 5393.560 kb on - strand at 5393.656 kb on - strand, within PFLU_RS24090 at 5393.719 kb on + strand, within PFLU_RS24090 at 5393.720 kb on - strand, within PFLU_RS24090 at 5393.756 kb on + strand, within PFLU_RS24090 at 5393.756 kb on + strand, within PFLU_RS24090 at 5393.757 kb on - strand, within PFLU_RS24090 at 5393.757 kb on - strand, within PFLU_RS24090 at 5393.988 kb on + strand, within PFLU_RS24090 at 5393.988 kb on + strand, within PFLU_RS24090 at 5393.989 kb on - strand, within PFLU_RS24090 at 5393.989 kb on - strand, within PFLU_RS24090 at 5394.017 kb on + strand, within PFLU_RS24090 at 5394.017 kb on + strand, within PFLU_RS24090 at 5394.017 kb on + strand, within PFLU_RS24090 at 5394.017 kb on + strand, within PFLU_RS24090 at 5394.017 kb on + strand, within PFLU_RS24090 at 5394.018 kb on - strand, within PFLU_RS24090 at 5394.018 kb on - strand, within PFLU_RS24090 at 5394.018 kb on - strand, within PFLU_RS24090 at 5394.018 kb on - strand, within PFLU_RS24090 at 5394.018 kb on - strand, within PFLU_RS24090 at 5394.018 kb on - strand, within PFLU_RS24090 at 5394.064 kb on - strand, within PFLU_RS24090 at 5394.182 kb on + strand at 5394.182 kb on + strand at 5394.183 kb on - strand at 5394.183 kb on - strand at 5394.217 kb on + strand at 5394.235 kb on + strand at 5394.235 kb on + strand at 5394.235 kb on + strand at 5394.235 kb on + strand at 5394.235 kb on + strand at 5394.235 kb on + strand at 5394.236 kb on - strand at 5394.457 kb on + strand, within PFLU_RS24095 at 5394.457 kb on + strand, within PFLU_RS24095 at 5394.458 kb on - strand, within PFLU_RS24095 at 5394.572 kb on + strand, within PFLU_RS24095 at 5394.573 kb on - strand, within PFLU_RS24095 at 5394.587 kb on - strand, within PFLU_RS24095 at 5394.679 kb on + strand, within PFLU_RS24095 at 5394.679 kb on + strand, within PFLU_RS24095 at 5394.680 kb on - strand, within PFLU_RS24095 at 5394.680 kb on - strand, within PFLU_RS24095 at 5394.747 kb on + strand at 5394.747 kb on + strand at 5394.747 kb on + strand at 5394.747 kb on + strand at 5394.747 kb on + strand at 5394.748 kb on - strand at 5394.748 kb on - strand at 5394.748 kb on - strand at 5394.748 kb on - strand at 5394.748 kb on - strand at 5394.753 kb on + strand at 5394.753 kb on + strand at 5394.754 kb on - strand at 5394.754 kb on - strand at 5394.762 kb on - strand at 5394.788 kb on + strand at 5394.788 kb on + strand at 5394.788 kb on + strand at 5394.788 kb on + strand at 5394.788 kb on + strand at 5394.788 kb on + strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.789 kb on - strand at 5394.939 kb on + strand at 5394.940 kb on - strand at 5394.956 kb on + strand at 5394.984 kb on + strand at 5394.984 kb on + strand at 5394.984 kb on + strand at 5394.984 kb on + strand at 5394.984 kb on + strand at 5394.984 kb on + strand at 5394.985 kb on - strand at 5394.985 kb on - strand at 5394.985 kb on - strand at 5395.143 kb on + strand, within PFLU_RS24100 at 5395.143 kb on + strand, within PFLU_RS24100 at 5395.143 kb on + strand, within PFLU_RS24100 at 5395.143 kb on + strand, within PFLU_RS24100 at 5395.143 kb on + strand, within PFLU_RS24100 at 5395.143 kb on + strand, within PFLU_RS24100 at 5395.143 kb on + strand, within PFLU_RS24100 at 5395.143 kb on + strand, within PFLU_RS24100 at 5395.143 kb on + strand, within PFLU_RS24100 at 5395.143 kb on + strand, within PFLU_RS24100 at 5395.143 kb on + strand, within PFLU_RS24100 at 5395.143 kb on + strand, within PFLU_RS24100 at 5395.144 kb on - strand, within PFLU_RS24100 at 5395.144 kb on - strand, within PFLU_RS24100 at 5395.144 kb on - strand, within PFLU_RS24100 at 5395.144 kb on - strand, within PFLU_RS24100 at 5395.144 kb on - strand, within PFLU_RS24100 at 5395.144 kb on - strand, within PFLU_RS24100 at 5395.144 kb on - strand, within PFLU_RS24100 at 5395.166 kb on + strand, within PFLU_RS24100 at 5395.166 kb on + strand, within PFLU_RS24100 at 5395.166 kb on + strand, within PFLU_RS24100 at 5395.166 kb on + strand, within PFLU_RS24100 at 5395.166 kb on + strand, within PFLU_RS24100 at 5395.166 kb on + strand, within PFLU_RS24100 at 5395.166 kb on + strand, within PFLU_RS24100 at 5395.166 kb on + strand, within PFLU_RS24100 at 5395.166 kb on + strand, within PFLU_RS24100 at 5395.166 kb on + strand, within PFLU_RS24100 at 5395.166 kb on + strand, within PFLU_RS24100 at 5395.166 kb on + strand, within PFLU_RS24100 at 5395.166 kb on + strand, within PFLU_RS24100 at 5395.166 kb on + strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100 at 5395.167 kb on - strand, within PFLU_RS24100
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 5,392,581 + -1.8 5,392,581 + -0.4 5,392,582 - -1.7 5,392,582 - -0.1 5,392,626 + PFLU_RS24085 0.12 -2.2 5,392,626 + PFLU_RS24085 0.12 -1.2 5,392,627 - PFLU_RS24085 0.12 -0.7 5,392,627 - PFLU_RS24085 0.12 -0.7 5,392,627 - PFLU_RS24085 0.12 +0.0 5,392,627 - PFLU_RS24085 0.12 -1.8 5,392,751 + PFLU_RS24085 0.24 -0.8 5,392,751 + PFLU_RS24085 0.24 -0.6 5,392,752 - PFLU_RS24085 0.24 -1.1 5,392,752 - PFLU_RS24085 0.24 -2.2 5,392,831 + PFLU_RS24085 0.31 -0.8 5,392,832 - PFLU_RS24085 0.31 -1.4 5,392,832 - PFLU_RS24085 0.31 -1.5 5,393,002 + PFLU_RS24085 0.47 -3.3 5,393,003 - PFLU_RS24085 0.48 -0.6 5,393,003 - PFLU_RS24085 0.48 -1.2 5,393,004 + PFLU_RS24085 0.48 -0.5 5,393,004 + PFLU_RS24085 0.48 -1.4 5,393,004 + PFLU_RS24085 0.48 -1.6 5,393,004 + PFLU_RS24085 0.48 -1.5 5,393,004 + PFLU_RS24085 0.48 -1.4 5,393,005 - PFLU_RS24085 0.48 -1.1 5,393,005 - PFLU_RS24085 0.48 -0.3 5,393,012 + PFLU_RS24085 0.48 -1.0 5,393,013 - PFLU_RS24085 0.49 -0.6 5,393,013 - PFLU_RS24085 0.49 -0.5 5,393,176 - PFLU_RS24085 0.64 -2.0 5,393,222 - PFLU_RS24085 0.68 -2.2 5,393,222 - PFLU_RS24085 0.68 -2.1 5,393,463 + +0.8 5,393,464 - -1.4 5,393,464 - -2.0 5,393,464 - +0.2 5,393,464 - -1.5 5,393,464 - +0.2 5,393,559 + -0.5 5,393,559 + +0.8 5,393,559 + +0.3 5,393,559 + -2.8 5,393,560 - -0.6 5,393,560 - -0.0 5,393,560 - -0.8 5,393,560 - +0.7 5,393,656 - PFLU_RS24090 0.16 -2.7 5,393,719 + PFLU_RS24090 0.26 -0.2 5,393,720 - PFLU_RS24090 0.26 +0.0 5,393,756 + PFLU_RS24090 0.32 +0.0 5,393,756 + PFLU_RS24090 0.32 -1.7 5,393,757 - PFLU_RS24090 0.33 -1.5 5,393,757 - PFLU_RS24090 0.33 +0.0 5,393,988 + PFLU_RS24090 0.70 -1.8 5,393,988 + PFLU_RS24090 0.70 -1.4 5,393,989 - PFLU_RS24090 0.70 -2.0 5,393,989 - PFLU_RS24090 0.70 +0.1 5,394,017 + PFLU_RS24090 0.75 -2.7 5,394,017 + PFLU_RS24090 0.75 -2.7 5,394,017 + PFLU_RS24090 0.75 -1.5 5,394,017 + PFLU_RS24090 0.75 -2.3 5,394,017 + PFLU_RS24090 0.75 -1.1 5,394,018 - PFLU_RS24090 0.75 -0.5 5,394,018 - PFLU_RS24090 0.75 -0.8 5,394,018 - PFLU_RS24090 0.75 -0.8 5,394,018 - PFLU_RS24090 0.75 +0.4 5,394,018 - PFLU_RS24090 0.75 -1.2 5,394,018 - PFLU_RS24090 0.75 -3.2 5,394,064 - PFLU_RS24090 0.83 +0.7 5,394,182 + -1.2 5,394,182 + +0.2 5,394,183 - -1.5 5,394,183 - -0.7 5,394,217 + +0.8 5,394,235 + +0.0 5,394,235 + -1.0 5,394,235 + +0.1 5,394,235 + -1.0 5,394,235 + -0.0 5,394,235 + -0.8 5,394,236 - +0.3 5,394,457 + PFLU_RS24095 0.42 -1.4 5,394,457 + PFLU_RS24095 0.42 -1.8 5,394,458 - PFLU_RS24095 0.42 -1.6 5,394,572 + PFLU_RS24095 0.64 -1.2 5,394,573 - PFLU_RS24095 0.64 -2.4 5,394,587 - PFLU_RS24095 0.67 +0.6 5,394,679 + PFLU_RS24095 0.84 -1.6 5,394,679 + PFLU_RS24095 0.84 -1.2 5,394,680 - PFLU_RS24095 0.84 -1.5 5,394,680 - PFLU_RS24095 0.84 -0.4 5,394,747 + +0.6 5,394,747 + +1.3 5,394,747 + -1.7 5,394,747 + -1.1 5,394,747 + -0.9 5,394,748 - -0.7 5,394,748 - -1.1 5,394,748 - -1.8 5,394,748 - -1.8 5,394,748 - -0.8 5,394,753 + -1.3 5,394,753 + +0.3 5,394,754 - +0.8 5,394,754 - +0.3 5,394,762 - -0.3 5,394,788 + -0.1 5,394,788 + -1.1 5,394,788 + -1.4 5,394,788 + +0.7 5,394,788 + +0.6 5,394,788 + -0.2 5,394,789 - +0.0 5,394,789 - -1.1 5,394,789 - +0.2 5,394,789 - -0.3 5,394,789 - +0.2 5,394,789 - +0.7 5,394,789 - +0.5 5,394,789 - -1.3 5,394,789 - -0.2 5,394,789 - +0.2 5,394,789 - -0.3 5,394,789 - +0.7 5,394,789 - -0.4 5,394,789 - -0.1 5,394,789 - -0.1 5,394,789 - +0.4 5,394,789 - +1.4 5,394,789 - +0.7 5,394,789 - -0.5 5,394,789 - -0.8 5,394,789 - -1.1 5,394,789 - -0.1 5,394,789 - +0.6 5,394,789 - +0.5 5,394,789 - +0.0 5,394,939 + -1.2 5,394,940 - +0.2 5,394,956 + +0.2 5,394,984 + -3.4 5,394,984 + -0.5 5,394,984 + -0.4 5,394,984 + -0.4 5,394,984 + -0.6 5,394,984 + +0.9 5,394,985 - +0.3 5,394,985 - +0.1 5,394,985 - -0.1 5,395,143 + PFLU_RS24100 0.27 -1.1 5,395,143 + PFLU_RS24100 0.27 +0.4 5,395,143 + PFLU_RS24100 0.27 +0.6 5,395,143 + PFLU_RS24100 0.27 -1.3 5,395,143 + PFLU_RS24100 0.27 +0.2 5,395,143 + PFLU_RS24100 0.27 -1.2 5,395,143 + PFLU_RS24100 0.27 -1.1 5,395,143 + PFLU_RS24100 0.27 -0.6 5,395,143 + PFLU_RS24100 0.27 +0.0 5,395,143 + PFLU_RS24100 0.27 -1.4 5,395,143 + PFLU_RS24100 0.27 +1.8 5,395,143 + PFLU_RS24100 0.27 +0.3 5,395,144 - PFLU_RS24100 0.28 +1.1 5,395,144 - PFLU_RS24100 0.28 +1.2 5,395,144 - PFLU_RS24100 0.28 -0.4 5,395,144 - PFLU_RS24100 0.28 +1.6 5,395,144 - PFLU_RS24100 0.28 +0.1 5,395,144 - PFLU_RS24100 0.28 +0.3 5,395,144 - PFLU_RS24100 0.28 -1.5 5,395,166 + PFLU_RS24100 0.31 +0.5 5,395,166 + PFLU_RS24100 0.31 -1.3 5,395,166 + PFLU_RS24100 0.31 +0.3 5,395,166 + PFLU_RS24100 0.31 +0.0 5,395,166 + PFLU_RS24100 0.31 +0.7 5,395,166 + PFLU_RS24100 0.31 -1.5 5,395,166 + PFLU_RS24100 0.31 -0.4 5,395,166 + PFLU_RS24100 0.31 -1.1 5,395,166 + PFLU_RS24100 0.31 +0.5 5,395,166 + PFLU_RS24100 0.31 -0.4 5,395,166 + PFLU_RS24100 0.31 -0.8 5,395,166 + PFLU_RS24100 0.31 -1.2 5,395,166 + PFLU_RS24100 0.31 +0.2 5,395,166 + PFLU_RS24100 0.31 +0.4 5,395,167 - PFLU_RS24100 0.31 +1.1 5,395,167 - PFLU_RS24100 0.31 -0.3 5,395,167 - PFLU_RS24100 0.31 -0.2 5,395,167 - PFLU_RS24100 0.31 -0.3 5,395,167 - PFLU_RS24100 0.31 -0.0 5,395,167 - PFLU_RS24100 0.31 -0.2 5,395,167 - PFLU_RS24100 0.31 +0.7 5,395,167 - PFLU_RS24100 0.31 -0.1 5,395,167 - PFLU_RS24100 0.31 +0.8 5,395,167 - PFLU_RS24100 0.31 -1.0 5,395,167 - PFLU_RS24100 0.31 -1.0 5,395,167 - PFLU_RS24100 0.31 -0.4 5,395,167 - PFLU_RS24100 0.31 +1.0 5,395,167 - PFLU_RS24100 0.31 +0.3 5,395,167 - PFLU_RS24100 0.31 +1.6 5,395,167 - PFLU_RS24100 0.31 -0.1 5,395,167 - PFLU_RS24100 0.31 -0.1
Or see this region's nucleotide sequence