Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS15065

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS15060 and PFLU_RS15065 are separated by 237 nucleotidesPFLU_RS15065 and PFLU_RS15070 are separated by 10 nucleotides PFLU_RS15060: PFLU_RS15060 - acetolactate synthase large subunit, at 3,366,917 to 3,368,458 _RS15060 PFLU_RS15065: PFLU_RS15065 - IclR family transcriptional regulator, at 3,368,696 to 3,369,454 _RS15065 PFLU_RS15070: PFLU_RS15070 - hypothetical protein, at 3,369,465 to 3,370,664 _RS15070 Position (kb) 3368 3369 3370Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3367.743 kb on + strand, within PFLU_RS15060at 3367.744 kb on - strand, within PFLU_RS15060at 3368.188 kb on + strand, within PFLU_RS15060at 3368.406 kb on + strandat 3368.406 kb on + strandat 3368.550 kb on + strandat 3368.867 kb on + strand, within PFLU_RS15065at 3368.867 kb on + strand, within PFLU_RS15065at 3369.023 kb on + strand, within PFLU_RS15065at 3369.024 kb on - strand, within PFLU_RS15065at 3369.024 kb on - strand, within PFLU_RS15065at 3369.024 kb on - strand, within PFLU_RS15065at 3369.024 kb on - strand, within PFLU_RS15065at 3369.024 kb on - strand, within PFLU_RS15065at 3369.613 kb on + strand, within PFLU_RS15070at 3369.614 kb on - strand, within PFLU_RS15070at 3369.636 kb on + strand, within PFLU_RS15070at 3369.636 kb on + strand, within PFLU_RS15070at 3369.637 kb on - strand, within PFLU_RS15070at 3369.637 kb on - strand, within PFLU_RS15070at 3369.637 kb on - strand, within PFLU_RS15070at 3369.656 kb on + strand, within PFLU_RS15070at 3369.744 kb on - strand, within PFLU_RS15070at 3369.744 kb on - strand, within PFLU_RS15070at 3369.744 kb on - strand, within PFLU_RS15070at 3369.863 kb on - strand, within PFLU_RS15070at 3369.872 kb on + strand, within PFLU_RS15070at 3369.872 kb on + strand, within PFLU_RS15070at 3369.873 kb on - strand, within PFLU_RS15070at 3369.873 kb on - strand, within PFLU_RS15070at 3369.873 kb on - strand, within PFLU_RS15070at 3369.902 kb on - strand, within PFLU_RS15070at 3369.902 kb on - strand, within PFLU_RS15070at 3369.902 kb on - strand, within PFLU_RS15070at 3370.013 kb on + strand, within PFLU_RS15070at 3370.014 kb on - strand, within PFLU_RS15070at 3370.015 kb on + strand, within PFLU_RS15070at 3370.016 kb on - strand, within PFLU_RS15070at 3370.016 kb on - strand, within PFLU_RS15070at 3370.120 kb on + strand, within PFLU_RS15070at 3370.121 kb on - strand, within PFLU_RS15070at 3370.262 kb on - strand, within PFLU_RS15070at 3370.262 kb on - strand, within PFLU_RS15070at 3370.262 kb on - strand, within PFLU_RS15070at 3370.262 kb on - strand, within PFLU_RS15070at 3370.432 kb on + strand, within PFLU_RS15070

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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3,367,743 + PFLU_RS15060 0.54 +0.1
3,367,744 - PFLU_RS15060 0.54 -0.4
3,368,188 + PFLU_RS15060 0.82 +0.9
3,368,406 + +0.5
3,368,406 + +0.8
3,368,550 + -0.4
3,368,867 + PFLU_RS15065 0.23 -3.4
3,368,867 + PFLU_RS15065 0.23 -2.2
3,369,023 + PFLU_RS15065 0.43 -1.0
3,369,024 - PFLU_RS15065 0.43 -3.4
3,369,024 - PFLU_RS15065 0.43 -1.0
3,369,024 - PFLU_RS15065 0.43 -3.8
3,369,024 - PFLU_RS15065 0.43 -3.1
3,369,024 - PFLU_RS15065 0.43 -1.6
3,369,613 + PFLU_RS15070 0.12 +0.2
3,369,614 - PFLU_RS15070 0.12 +0.6
3,369,636 + PFLU_RS15070 0.14 +0.5
3,369,636 + PFLU_RS15070 0.14 +0.7
3,369,637 - PFLU_RS15070 0.14 -0.4
3,369,637 - PFLU_RS15070 0.14 -1.6
3,369,637 - PFLU_RS15070 0.14 +1.1
3,369,656 + PFLU_RS15070 0.16 +0.2
3,369,744 - PFLU_RS15070 0.23 -1.1
3,369,744 - PFLU_RS15070 0.23 +0.4
3,369,744 - PFLU_RS15070 0.23 +0.2
3,369,863 - PFLU_RS15070 0.33 +0.5
3,369,872 + PFLU_RS15070 0.34 +0.8
3,369,872 + PFLU_RS15070 0.34 +0.3
3,369,873 - PFLU_RS15070 0.34 +0.1
3,369,873 - PFLU_RS15070 0.34 -0.4
3,369,873 - PFLU_RS15070 0.34 +0.6
3,369,902 - PFLU_RS15070 0.36 -0.6
3,369,902 - PFLU_RS15070 0.36 -0.1
3,369,902 - PFLU_RS15070 0.36 +0.5
3,370,013 + PFLU_RS15070 0.46 +0.7
3,370,014 - PFLU_RS15070 0.46 -1.7
3,370,015 + PFLU_RS15070 0.46 -1.3
3,370,016 - PFLU_RS15070 0.46 -0.6
3,370,016 - PFLU_RS15070 0.46 -0.7
3,370,120 + PFLU_RS15070 0.55 +1.3
3,370,121 - PFLU_RS15070 0.55 -0.3
3,370,262 - PFLU_RS15070 0.66 -0.2
3,370,262 - PFLU_RS15070 0.66 -0.1
3,370,262 - PFLU_RS15070 0.66 -0.8
3,370,262 - PFLU_RS15070 0.66 +0.7
3,370,432 + PFLU_RS15070 0.81 -2.5

Or see this region's nucleotide sequence