Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3035

Experiment: MoLS4 with limited (C) D,L-Lactate (7mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3033 and DVU3035 are separated by 191 nucleotidesDVU3035 and DVU3036 are separated by 182 nucleotides DVU3033: DVU3033 - iron-sulfur cluster-binding protein (TIGR), at 3,157,385 to 3,159,538 DVU3033 DVU3035: DVU3035 - methyl-accepting chemotaxis protein, putative (TIGR), at 3,159,730 to 3,161,541 DVU3035 DVU3036: DVU3036 - conserved hypothetical protein (TIGR), at 3,161,724 to 3,162,716 DVU3036 Position (kb) 3159 3160 3161 3162Strain fitness (log2 ratio) -3 -2 -1 0 1at 3158.796 kb on + strand, within DVU3033at 3158.826 kb on - strand, within DVU3033at 3158.847 kb on + strand, within DVU3033at 3158.857 kb on + strand, within DVU3033at 3158.860 kb on - strand, within DVU3033at 3158.865 kb on - strand, within DVU3033at 3158.865 kb on - strand, within DVU3033at 3158.915 kb on + strand, within DVU3033at 3158.923 kb on - strand, within DVU3033at 3158.925 kb on + strand, within DVU3033at 3158.952 kb on - strand, within DVU3033at 3158.996 kb on + strand, within DVU3033at 3159.024 kb on + strand, within DVU3033at 3159.031 kb on + strand, within DVU3033at 3159.055 kb on + strand, within DVU3033at 3159.069 kb on + strand, within DVU3033at 3159.069 kb on + strand, within DVU3033at 3159.069 kb on + strand, within DVU3033at 3159.069 kb on + strand, within DVU3033at 3159.077 kb on - strand, within DVU3033at 3159.087 kb on - strand, within DVU3033at 3159.087 kb on - strand, within DVU3033at 3159.238 kb on - strand, within DVU3033at 3159.441 kb on - strandat 3159.490 kb on + strandat 3159.551 kb on - strandat 3159.637 kb on + strandat 3159.664 kb on + strandat 3159.672 kb on - strandat 3159.682 kb on - strandat 3159.686 kb on + strandat 3159.691 kb on + strandat 3159.868 kb on + strandat 3159.977 kb on - strand, within DVU3035at 3160.014 kb on + strand, within DVU3035at 3160.037 kb on - strand, within DVU3035at 3160.081 kb on + strand, within DVU3035at 3160.128 kb on - strand, within DVU3035at 3160.161 kb on + strand, within DVU3035at 3160.220 kb on - strand, within DVU3035at 3160.373 kb on + strand, within DVU3035at 3160.461 kb on - strand, within DVU3035at 3160.508 kb on - strand, within DVU3035at 3160.531 kb on + strand, within DVU3035at 3160.531 kb on + strand, within DVU3035at 3160.575 kb on + strand, within DVU3035at 3160.589 kb on - strand, within DVU3035at 3160.591 kb on + strand, within DVU3035at 3160.619 kb on + strand, within DVU3035at 3160.638 kb on + strand, within DVU3035at 3160.686 kb on + strand, within DVU3035at 3160.691 kb on - strand, within DVU3035at 3160.720 kb on - strand, within DVU3035at 3160.725 kb on + strand, within DVU3035at 3160.733 kb on - strand, within DVU3035at 3160.844 kb on + strand, within DVU3035at 3160.874 kb on + strand, within DVU3035at 3161.018 kb on - strand, within DVU3035at 3161.229 kb on - strand, within DVU3035at 3161.260 kb on + strand, within DVU3035at 3161.326 kb on + strand, within DVU3035at 3161.326 kb on + strand, within DVU3035at 3161.408 kb on + strandat 3161.439 kb on - strandat 3161.439 kb on - strandat 3161.451 kb on + strandat 3161.594 kb on + strandat 3161.606 kb on + strandat 3161.606 kb on + strandat 3161.763 kb on + strandat 3161.802 kb on - strandat 3161.802 kb on - strandat 3161.836 kb on + strand, within DVU3036at 3161.873 kb on + strand, within DVU3036at 3161.873 kb on + strand, within DVU3036at 3161.873 kb on + strand, within DVU3036at 3161.929 kb on - strand, within DVU3036at 3161.996 kb on - strand, within DVU3036at 3161.997 kb on + strand, within DVU3036at 3162.009 kb on + strand, within DVU3036at 3162.018 kb on - strand, within DVU3036at 3162.020 kb on + strand, within DVU3036at 3162.090 kb on + strand, within DVU3036at 3162.172 kb on + strand, within DVU3036at 3162.220 kb on + strand, within DVU3036at 3162.220 kb on + strand, within DVU3036at 3162.220 kb on + strand, within DVU3036at 3162.283 kb on - strand, within DVU3036at 3162.320 kb on + strand, within DVU3036at 3162.344 kb on + strand, within DVU3036at 3162.396 kb on + strand, within DVU3036at 3162.404 kb on - strand, within DVU3036at 3162.460 kb on - strand, within DVU3036at 3162.534 kb on - strand, within DVU3036at 3162.540 kb on - strand, within DVU3036

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with limited (C) D,L-Lactate (7mM)
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3,158,796 + DVU3033 0.66 -0.2
3,158,826 - DVU3033 0.67 -1.8
3,158,847 + DVU3033 0.68 +0.4
3,158,857 + DVU3033 0.68 -0.5
3,158,860 - DVU3033 0.68 +0.7
3,158,865 - DVU3033 0.69 -0.9
3,158,865 - DVU3033 0.69 -0.3
3,158,915 + DVU3033 0.71 -0.4
3,158,923 - DVU3033 0.71 +0.4
3,158,925 + DVU3033 0.71 -0.3
3,158,952 - DVU3033 0.73 -1.0
3,158,996 + DVU3033 0.75 -0.1
3,159,024 + DVU3033 0.76 -0.3
3,159,031 + DVU3033 0.76 -0.2
3,159,055 + DVU3033 0.78 +0.1
3,159,069 + DVU3033 0.78 +0.6
3,159,069 + DVU3033 0.78 -0.3
3,159,069 + DVU3033 0.78 -0.0
3,159,069 + DVU3033 0.78 -1.4
3,159,077 - DVU3033 0.79 -0.8
3,159,087 - DVU3033 0.79 +0.6
3,159,087 - DVU3033 0.79 -0.3
3,159,238 - DVU3033 0.86 +1.7
3,159,441 - -0.2
3,159,490 + -0.2
3,159,551 - -0.1
3,159,637 + -1.3
3,159,664 + +0.7
3,159,672 - -0.2
3,159,682 - -0.3
3,159,686 + -0.6
3,159,691 + -0.3
3,159,868 + +0.1
3,159,977 - DVU3035 0.14 +0.0
3,160,014 + DVU3035 0.16 +1.4
3,160,037 - DVU3035 0.17 -0.1
3,160,081 + DVU3035 0.19 -0.2
3,160,128 - DVU3035 0.22 +0.2
3,160,161 + DVU3035 0.24 +0.9
3,160,220 - DVU3035 0.27 -0.3
3,160,373 + DVU3035 0.35 +0.3
3,160,461 - DVU3035 0.40 +0.1
3,160,508 - DVU3035 0.43 +0.4
3,160,531 + DVU3035 0.44 +0.4
3,160,531 + DVU3035 0.44 -0.9
3,160,575 + DVU3035 0.47 -1.3
3,160,589 - DVU3035 0.47 +0.2
3,160,591 + DVU3035 0.48 +0.2
3,160,619 + DVU3035 0.49 -0.6
3,160,638 + DVU3035 0.50 +0.2
3,160,686 + DVU3035 0.53 +0.0
3,160,691 - DVU3035 0.53 +1.3
3,160,720 - DVU3035 0.55 +0.4
3,160,725 + DVU3035 0.55 -0.1
3,160,733 - DVU3035 0.55 +0.3
3,160,844 + DVU3035 0.61 +0.3
3,160,874 + DVU3035 0.63 -0.0
3,161,018 - DVU3035 0.71 +0.3
3,161,229 - DVU3035 0.83 -0.2
3,161,260 + DVU3035 0.84 -3.0
3,161,326 + DVU3035 0.88 +0.2
3,161,326 + DVU3035 0.88 -0.0
3,161,408 + +1.0
3,161,439 - +0.3
3,161,439 - -0.8
3,161,451 + -0.1
3,161,594 + +1.2
3,161,606 + +0.3
3,161,606 + -0.1
3,161,763 + -0.1
3,161,802 - +0.0
3,161,802 - -0.3
3,161,836 + DVU3036 0.11 -0.0
3,161,873 + DVU3036 0.15 -0.3
3,161,873 + DVU3036 0.15 -1.3
3,161,873 + DVU3036 0.15 -0.3
3,161,929 - DVU3036 0.21 +0.0
3,161,996 - DVU3036 0.27 -0.9
3,161,997 + DVU3036 0.27 -0.1
3,162,009 + DVU3036 0.29 -0.5
3,162,018 - DVU3036 0.30 +0.0
3,162,020 + DVU3036 0.30 -0.2
3,162,090 + DVU3036 0.37 -0.4
3,162,172 + DVU3036 0.45 -0.3
3,162,220 + DVU3036 0.50 -0.9
3,162,220 + DVU3036 0.50 -0.4
3,162,220 + DVU3036 0.50 -0.1
3,162,283 - DVU3036 0.56 -0.3
3,162,320 + DVU3036 0.60 -0.8
3,162,344 + DVU3036 0.62 -0.1
3,162,396 + DVU3036 0.68 +0.2
3,162,404 - DVU3036 0.68 -0.6
3,162,460 - DVU3036 0.74 +0.1
3,162,534 - DVU3036 0.82 +0.0
3,162,540 - DVU3036 0.82 +0.0

Or see this region's nucleotide sequence