Experiment: MoLS4 with limited (C) D,L-Lactate (7mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3033 and DVU3035 are separated by 191 nucleotides DVU3035 and DVU3036 are separated by 182 nucleotides
DVU3033: DVU3033 - iron-sulfur cluster-binding protein (TIGR), at 3,157,385 to 3,159,538
DVU3033
DVU3035: DVU3035 - methyl-accepting chemotaxis protein, putative (TIGR), at 3,159,730 to 3,161,541
DVU3035
DVU3036: DVU3036 - conserved hypothetical protein (TIGR), at 3,161,724 to 3,162,716
DVU3036
Position (kb)
3159
3160
3161
3162 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3158.796 kb on + strand, within DVU3033 at 3158.826 kb on - strand, within DVU3033 at 3158.847 kb on + strand, within DVU3033 at 3158.857 kb on + strand, within DVU3033 at 3158.860 kb on - strand, within DVU3033 at 3158.865 kb on - strand, within DVU3033 at 3158.865 kb on - strand, within DVU3033 at 3158.915 kb on + strand, within DVU3033 at 3158.923 kb on - strand, within DVU3033 at 3158.925 kb on + strand, within DVU3033 at 3158.952 kb on - strand, within DVU3033 at 3158.996 kb on + strand, within DVU3033 at 3159.024 kb on + strand, within DVU3033 at 3159.031 kb on + strand, within DVU3033 at 3159.055 kb on + strand, within DVU3033 at 3159.069 kb on + strand, within DVU3033 at 3159.069 kb on + strand, within DVU3033 at 3159.069 kb on + strand, within DVU3033 at 3159.069 kb on + strand, within DVU3033 at 3159.077 kb on - strand, within DVU3033 at 3159.087 kb on - strand, within DVU3033 at 3159.087 kb on - strand, within DVU3033 at 3159.238 kb on - strand, within DVU3033 at 3159.441 kb on - strand at 3159.490 kb on + strand at 3159.551 kb on - strand at 3159.637 kb on + strand at 3159.664 kb on + strand at 3159.672 kb on - strand at 3159.682 kb on - strand at 3159.686 kb on + strand at 3159.691 kb on + strand at 3159.868 kb on + strand at 3159.977 kb on - strand, within DVU3035 at 3160.014 kb on + strand, within DVU3035 at 3160.037 kb on - strand, within DVU3035 at 3160.081 kb on + strand, within DVU3035 at 3160.128 kb on - strand, within DVU3035 at 3160.161 kb on + strand, within DVU3035 at 3160.220 kb on - strand, within DVU3035 at 3160.373 kb on + strand, within DVU3035 at 3160.461 kb on - strand, within DVU3035 at 3160.508 kb on - strand, within DVU3035 at 3160.531 kb on + strand, within DVU3035 at 3160.531 kb on + strand, within DVU3035 at 3160.575 kb on + strand, within DVU3035 at 3160.589 kb on - strand, within DVU3035 at 3160.591 kb on + strand, within DVU3035 at 3160.619 kb on + strand, within DVU3035 at 3160.638 kb on + strand, within DVU3035 at 3160.686 kb on + strand, within DVU3035 at 3160.691 kb on - strand, within DVU3035 at 3160.720 kb on - strand, within DVU3035 at 3160.725 kb on + strand, within DVU3035 at 3160.733 kb on - strand, within DVU3035 at 3160.844 kb on + strand, within DVU3035 at 3160.874 kb on + strand, within DVU3035 at 3161.018 kb on - strand, within DVU3035 at 3161.229 kb on - strand, within DVU3035 at 3161.260 kb on + strand, within DVU3035 at 3161.326 kb on + strand, within DVU3035 at 3161.326 kb on + strand, within DVU3035 at 3161.408 kb on + strand at 3161.439 kb on - strand at 3161.439 kb on - strand at 3161.451 kb on + strand at 3161.594 kb on + strand at 3161.606 kb on + strand at 3161.606 kb on + strand at 3161.763 kb on + strand at 3161.802 kb on - strand at 3161.802 kb on - strand at 3161.836 kb on + strand, within DVU3036 at 3161.873 kb on + strand, within DVU3036 at 3161.873 kb on + strand, within DVU3036 at 3161.873 kb on + strand, within DVU3036 at 3161.929 kb on - strand, within DVU3036 at 3161.996 kb on - strand, within DVU3036 at 3161.997 kb on + strand, within DVU3036 at 3162.009 kb on + strand, within DVU3036 at 3162.018 kb on - strand, within DVU3036 at 3162.020 kb on + strand, within DVU3036 at 3162.090 kb on + strand, within DVU3036 at 3162.172 kb on + strand, within DVU3036 at 3162.220 kb on + strand, within DVU3036 at 3162.220 kb on + strand, within DVU3036 at 3162.220 kb on + strand, within DVU3036 at 3162.283 kb on - strand, within DVU3036 at 3162.320 kb on + strand, within DVU3036 at 3162.344 kb on + strand, within DVU3036 at 3162.396 kb on + strand, within DVU3036 at 3162.404 kb on - strand, within DVU3036 at 3162.460 kb on - strand, within DVU3036 at 3162.534 kb on - strand, within DVU3036 at 3162.540 kb on - strand, within DVU3036
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with limited (C) D,L-Lactate (7mM) remove 3,158,796 + DVU3033 0.66 -0.2 3,158,826 - DVU3033 0.67 -1.8 3,158,847 + DVU3033 0.68 +0.4 3,158,857 + DVU3033 0.68 -0.5 3,158,860 - DVU3033 0.68 +0.7 3,158,865 - DVU3033 0.69 -0.9 3,158,865 - DVU3033 0.69 -0.3 3,158,915 + DVU3033 0.71 -0.4 3,158,923 - DVU3033 0.71 +0.4 3,158,925 + DVU3033 0.71 -0.3 3,158,952 - DVU3033 0.73 -1.0 3,158,996 + DVU3033 0.75 -0.1 3,159,024 + DVU3033 0.76 -0.3 3,159,031 + DVU3033 0.76 -0.2 3,159,055 + DVU3033 0.78 +0.1 3,159,069 + DVU3033 0.78 +0.6 3,159,069 + DVU3033 0.78 -0.3 3,159,069 + DVU3033 0.78 -0.0 3,159,069 + DVU3033 0.78 -1.4 3,159,077 - DVU3033 0.79 -0.8 3,159,087 - DVU3033 0.79 +0.6 3,159,087 - DVU3033 0.79 -0.3 3,159,238 - DVU3033 0.86 +1.7 3,159,441 - -0.2 3,159,490 + -0.2 3,159,551 - -0.1 3,159,637 + -1.3 3,159,664 + +0.7 3,159,672 - -0.2 3,159,682 - -0.3 3,159,686 + -0.6 3,159,691 + -0.3 3,159,868 + +0.1 3,159,977 - DVU3035 0.14 +0.0 3,160,014 + DVU3035 0.16 +1.4 3,160,037 - DVU3035 0.17 -0.1 3,160,081 + DVU3035 0.19 -0.2 3,160,128 - DVU3035 0.22 +0.2 3,160,161 + DVU3035 0.24 +0.9 3,160,220 - DVU3035 0.27 -0.3 3,160,373 + DVU3035 0.35 +0.3 3,160,461 - DVU3035 0.40 +0.1 3,160,508 - DVU3035 0.43 +0.4 3,160,531 + DVU3035 0.44 +0.4 3,160,531 + DVU3035 0.44 -0.9 3,160,575 + DVU3035 0.47 -1.3 3,160,589 - DVU3035 0.47 +0.2 3,160,591 + DVU3035 0.48 +0.2 3,160,619 + DVU3035 0.49 -0.6 3,160,638 + DVU3035 0.50 +0.2 3,160,686 + DVU3035 0.53 +0.0 3,160,691 - DVU3035 0.53 +1.3 3,160,720 - DVU3035 0.55 +0.4 3,160,725 + DVU3035 0.55 -0.1 3,160,733 - DVU3035 0.55 +0.3 3,160,844 + DVU3035 0.61 +0.3 3,160,874 + DVU3035 0.63 -0.0 3,161,018 - DVU3035 0.71 +0.3 3,161,229 - DVU3035 0.83 -0.2 3,161,260 + DVU3035 0.84 -3.0 3,161,326 + DVU3035 0.88 +0.2 3,161,326 + DVU3035 0.88 -0.0 3,161,408 + +1.0 3,161,439 - +0.3 3,161,439 - -0.8 3,161,451 + -0.1 3,161,594 + +1.2 3,161,606 + +0.3 3,161,606 + -0.1 3,161,763 + -0.1 3,161,802 - +0.0 3,161,802 - -0.3 3,161,836 + DVU3036 0.11 -0.0 3,161,873 + DVU3036 0.15 -0.3 3,161,873 + DVU3036 0.15 -1.3 3,161,873 + DVU3036 0.15 -0.3 3,161,929 - DVU3036 0.21 +0.0 3,161,996 - DVU3036 0.27 -0.9 3,161,997 + DVU3036 0.27 -0.1 3,162,009 + DVU3036 0.29 -0.5 3,162,018 - DVU3036 0.30 +0.0 3,162,020 + DVU3036 0.30 -0.2 3,162,090 + DVU3036 0.37 -0.4 3,162,172 + DVU3036 0.45 -0.3 3,162,220 + DVU3036 0.50 -0.9 3,162,220 + DVU3036 0.50 -0.4 3,162,220 + DVU3036 0.50 -0.1 3,162,283 - DVU3036 0.56 -0.3 3,162,320 + DVU3036 0.60 -0.8 3,162,344 + DVU3036 0.62 -0.1 3,162,396 + DVU3036 0.68 +0.2 3,162,404 - DVU3036 0.68 -0.6 3,162,460 - DVU3036 0.74 +0.1 3,162,534 - DVU3036 0.82 +0.0 3,162,540 - DVU3036 0.82 +0.0
Or see this region's nucleotide sequence