Strain Fitness in Dechlorosoma suillum PS around Dsui_0036

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0035 and Dsui_0036 are separated by 115 nucleotidesDsui_0036 and Dsui_0037 are separated by 86 nucleotides Dsui_0035: Dsui_0035 - ankyrin repeat-containing protein, at 31,805 to 32,854 _0035 Dsui_0036: Dsui_0036 - TonB family protein, at 32,970 to 33,542 _0036 Dsui_0037: Dsui_0037 - putative acyl-CoA transferase/carnitine dehydratase, at 33,629 to 34,840 _0037 Position (kb) 32 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 32.118 kb on - strand, within Dsui_0035at 32.129 kb on - strand, within Dsui_0035at 32.187 kb on - strand, within Dsui_0035at 32.206 kb on + strand, within Dsui_0035at 32.207 kb on + strandat 32.210 kb on - strand, within Dsui_0035at 32.210 kb on - strand, within Dsui_0035at 32.215 kb on - strandat 32.215 kb on - strand, within Dsui_0035at 32.215 kb on - strand, within Dsui_0035at 32.230 kb on - strand, within Dsui_0035at 32.280 kb on - strand, within Dsui_0035at 32.282 kb on + strand, within Dsui_0035at 32.332 kb on - strand, within Dsui_0035at 32.433 kb on + strandat 32.477 kb on + strandat 32.486 kb on + strand, within Dsui_0035at 32.618 kb on - strand, within Dsui_0035at 32.660 kb on + strandat 32.671 kb on + strandat 32.671 kb on + strandat 32.758 kb on - strandat 32.834 kb on - strandat 33.188 kb on + strand, within Dsui_0036at 33.188 kb on + strand, within Dsui_0036at 33.261 kb on - strand, within Dsui_0036at 33.273 kb on - strand, within Dsui_0036at 33.332 kb on + strand, within Dsui_0036at 33.353 kb on - strand, within Dsui_0036at 33.551 kb on + strandat 33.559 kb on - strandat 33.671 kb on + strandat 33.715 kb on + strandat 33.786 kb on - strand, within Dsui_0037at 33.851 kb on + strandat 33.871 kb on + strand, within Dsui_0037at 33.895 kb on + strandat 33.918 kb on + strand, within Dsui_0037at 33.930 kb on - strand, within Dsui_0037at 33.962 kb on - strand, within Dsui_0037at 34.171 kb on - strand, within Dsui_0037at 34.182 kb on + strand, within Dsui_0037at 34.190 kb on + strand, within Dsui_0037at 34.225 kb on - strand, within Dsui_0037at 34.225 kb on - strand, within Dsui_0037at 34.237 kb on - strand, within Dsui_0037at 34.238 kb on - strand, within Dsui_0037at 34.242 kb on + strand, within Dsui_0037at 34.275 kb on + strand, within Dsui_0037at 34.297 kb on + strand, within Dsui_0037at 34.306 kb on - strandat 34.428 kb on + strand, within Dsui_0037at 34.436 kb on - strand, within Dsui_0037at 34.461 kb on - strand, within Dsui_0037at 34.476 kb on - strand, within Dsui_0037at 34.482 kb on - strand, within Dsui_0037

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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32,118 - Dsui_0035 0.30 -0.6
32,129 - Dsui_0035 0.31 +0.4
32,187 - Dsui_0035 0.36 +0.9
32,206 + Dsui_0035 0.38 -2.8
32,207 + -1.6
32,210 - Dsui_0035 0.39 +0.4
32,210 - Dsui_0035 0.39 +0.4
32,215 - -0.3
32,215 - Dsui_0035 0.39 +0.8
32,215 - Dsui_0035 0.39 -0.1
32,230 - Dsui_0035 0.40 +1.1
32,280 - Dsui_0035 0.45 -0.5
32,282 + Dsui_0035 0.45 -0.7
32,332 - Dsui_0035 0.50 +0.4
32,433 + -0.6
32,477 + -1.8
32,486 + Dsui_0035 0.65 -0.3
32,618 - Dsui_0035 0.77 +0.9
32,660 + +1.1
32,671 + -0.2
32,671 + -0.4
32,758 - +0.4
32,834 - +1.6
33,188 + Dsui_0036 0.38 +0.9
33,188 + Dsui_0036 0.38 +0.8
33,261 - Dsui_0036 0.51 +1.2
33,273 - Dsui_0036 0.53 +1.3
33,332 + Dsui_0036 0.63 +0.5
33,353 - Dsui_0036 0.67 +0.4
33,551 + +0.3
33,559 - +0.9
33,671 + -0.9
33,715 + -2.4
33,786 - Dsui_0037 0.13 +1.1
33,851 + -1.1
33,871 + Dsui_0037 0.20 +0.7
33,895 + +0.7
33,918 + Dsui_0037 0.24 -2.1
33,930 - Dsui_0037 0.25 +1.1
33,962 - Dsui_0037 0.27 +0.6
34,171 - Dsui_0037 0.45 +0.7
34,182 + Dsui_0037 0.46 +0.1
34,190 + Dsui_0037 0.46 +0.2
34,225 - Dsui_0037 0.49 -1.3
34,225 - Dsui_0037 0.49 +1.0
34,237 - Dsui_0037 0.50 +0.3
34,238 - Dsui_0037 0.50 +0.5
34,242 + Dsui_0037 0.51 -1.0
34,275 + Dsui_0037 0.53 -1.0
34,297 + Dsui_0037 0.55 -0.8
34,306 - +1.5
34,428 + Dsui_0037 0.66 +0.3
34,436 - Dsui_0037 0.67 +1.7
34,461 - Dsui_0037 0.69 +1.8
34,476 - Dsui_0037 0.70 +1.5
34,482 - Dsui_0037 0.70 +1.2

Or see this region's nucleotide sequence