Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05440

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05430 and ABID97_RS05435 are separated by 361 nucleotidesABID97_RS05435 and ABID97_RS05440 are separated by 117 nucleotidesABID97_RS05440 and ABID97_RS05445 overlap by 22 nucleotidesABID97_RS05445 and ABID97_RS05450 are separated by 130 nucleotides ABID97_RS05430: ABID97_RS05430 - hypothetical protein, at 1,137,666 to 1,137,881 _RS05430 ABID97_RS05435: ABID97_RS05435 - hypothetical protein, at 1,138,243 to 1,138,545 _RS05435 ABID97_RS05440: ABID97_RS05440 - hypothetical protein, at 1,138,663 to 1,139,016 _RS05440 ABID97_RS05445: ABID97_RS05445 - ORF6N domain-containing protein, at 1,138,995 to 1,139,246 _RS05445 ABID97_RS05450: ABID97_RS05450 - amidase family protein, at 1,139,377 to 1,140,900 _RS05450 Position (kb) 1138 1139 1140Strain fitness (log2 ratio) -2 -1 0 1at 1137.751 kb on + strand, within ABID97_RS05430at 1137.751 kb on + strand, within ABID97_RS05430at 1137.751 kb on + strand, within ABID97_RS05430at 1137.751 kb on + strand, within ABID97_RS05430at 1137.751 kb on + strand, within ABID97_RS05430at 1137.752 kb on - strand, within ABID97_RS05430at 1137.752 kb on - strand, within ABID97_RS05430at 1137.752 kb on - strand, within ABID97_RS05430at 1137.752 kb on - strand, within ABID97_RS05430at 1137.752 kb on - strand, within ABID97_RS05430at 1137.752 kb on - strand, within ABID97_RS05430at 1137.752 kb on - strand, within ABID97_RS05430at 1137.752 kb on - strand, within ABID97_RS05430at 1137.752 kb on - strand, within ABID97_RS05430at 1137.752 kb on - strand, within ABID97_RS05430at 1137.752 kb on - strand, within ABID97_RS05430at 1137.832 kb on + strand, within ABID97_RS05430at 1137.832 kb on + strand, within ABID97_RS05430at 1137.832 kb on + strand, within ABID97_RS05430at 1137.832 kb on + strand, within ABID97_RS05430at 1137.832 kb on + strand, within ABID97_RS05430at 1137.832 kb on + strand, within ABID97_RS05430at 1137.832 kb on + strand, within ABID97_RS05430at 1137.832 kb on + strand, within ABID97_RS05430at 1137.832 kb on + strand, within ABID97_RS05430at 1137.832 kb on + strand, within ABID97_RS05430at 1137.832 kb on + strand, within ABID97_RS05430at 1137.832 kb on + strand, within ABID97_RS05430at 1137.832 kb on + strand, within ABID97_RS05430at 1137.832 kb on + strand, within ABID97_RS05430at 1137.832 kb on + strand, within ABID97_RS05430at 1137.833 kb on - strand, within ABID97_RS05430at 1137.833 kb on - strand, within ABID97_RS05430at 1137.833 kb on - strand, within ABID97_RS05430at 1137.833 kb on - strand, within ABID97_RS05430at 1137.833 kb on - strand, within ABID97_RS05430at 1137.833 kb on - strand, within ABID97_RS05430at 1137.833 kb on - strand, within ABID97_RS05430at 1137.833 kb on - strand, within ABID97_RS05430at 1137.833 kb on - strand, within ABID97_RS05430at 1137.833 kb on - strand, within ABID97_RS05430at 1137.833 kb on - strand, within ABID97_RS05430at 1137.833 kb on - strand, within ABID97_RS05430at 1137.833 kb on - strand, within ABID97_RS05430at 1137.833 kb on - strand, within ABID97_RS05430at 1137.835 kb on - strand, within ABID97_RS05430at 1137.944 kb on + strandat 1137.944 kb on + strandat 1137.944 kb on + strandat 1137.945 kb on - strandat 1137.945 kb on - strandat 1137.981 kb on + strandat 1137.981 kb on + strandat 1137.981 kb on + strandat 1137.982 kb on - strandat 1137.982 kb on - strandat 1137.982 kb on - strandat 1137.982 kb on - strandat 1138.129 kb on + strandat 1138.130 kb on - strandat 1138.186 kb on + strandat 1138.187 kb on - strandat 1138.258 kb on - strandat 1138.258 kb on - strandat 1138.258 kb on - strandat 1138.258 kb on - strandat 1138.263 kb on + strandat 1138.263 kb on + strandat 1138.263 kb on + strandat 1138.263 kb on + strandat 1138.264 kb on - strandat 1138.264 kb on - strandat 1138.317 kb on + strand, within ABID97_RS05435at 1138.318 kb on - strand, within ABID97_RS05435at 1138.318 kb on - strand, within ABID97_RS05435at 1138.318 kb on - strand, within ABID97_RS05435at 1138.318 kb on - strand, within ABID97_RS05435at 1138.318 kb on - strand, within ABID97_RS05435at 1138.339 kb on + strand, within ABID97_RS05435at 1138.340 kb on - strand, within ABID97_RS05435at 1138.340 kb on - strand, within ABID97_RS05435at 1138.369 kb on + strand, within ABID97_RS05435at 1138.369 kb on + strand, within ABID97_RS05435at 1138.369 kb on + strand, within ABID97_RS05435at 1138.369 kb on + strand, within ABID97_RS05435at 1138.369 kb on + strand, within ABID97_RS05435at 1138.370 kb on - strand, within ABID97_RS05435at 1138.370 kb on - strand, within ABID97_RS05435at 1138.370 kb on - strand, within ABID97_RS05435at 1138.370 kb on - strand, within ABID97_RS05435at 1138.404 kb on + strand, within ABID97_RS05435at 1138.404 kb on + strand, within ABID97_RS05435at 1138.405 kb on - strand, within ABID97_RS05435at 1138.405 kb on - strand, within ABID97_RS05435at 1138.405 kb on - strand, within ABID97_RS05435at 1138.405 kb on - strand, within ABID97_RS05435at 1138.405 kb on - strand, within ABID97_RS05435at 1138.405 kb on - strand, within ABID97_RS05435at 1138.405 kb on - strand, within ABID97_RS05435at 1138.405 kb on - strand, within ABID97_RS05435at 1138.405 kb on - strand, within ABID97_RS05435at 1138.406 kb on + strand, within ABID97_RS05435at 1138.406 kb on + strand, within ABID97_RS05435at 1138.406 kb on + strand, within ABID97_RS05435at 1138.406 kb on + strand, within ABID97_RS05435at 1138.406 kb on + strand, within ABID97_RS05435at 1138.407 kb on - strand, within ABID97_RS05435at 1138.407 kb on - strand, within ABID97_RS05435at 1138.407 kb on - strand, within ABID97_RS05435at 1138.407 kb on - strand, within ABID97_RS05435at 1138.407 kb on - strand, within ABID97_RS05435at 1138.410 kb on + strand, within ABID97_RS05435at 1138.410 kb on + strand, within ABID97_RS05435at 1138.410 kb on + strand, within ABID97_RS05435at 1138.410 kb on + strand, within ABID97_RS05435at 1138.410 kb on + strand, within ABID97_RS05435at 1138.411 kb on - strand, within ABID97_RS05435at 1138.411 kb on - strand, within ABID97_RS05435at 1138.411 kb on - strand, within ABID97_RS05435at 1138.411 kb on - strand, within ABID97_RS05435at 1138.411 kb on - strand, within ABID97_RS05435at 1138.411 kb on - strand, within ABID97_RS05435at 1138.411 kb on - strand, within ABID97_RS05435at 1138.543 kb on + strandat 1138.543 kb on + strandat 1138.544 kb on - strandat 1138.544 kb on - strandat 1138.590 kb on + strandat 1138.590 kb on + strandat 1138.590 kb on + strandat 1138.590 kb on + strandat 1138.590 kb on + strandat 1138.590 kb on + strandat 1138.591 kb on - strandat 1138.591 kb on - strandat 1138.591 kb on - strandat 1138.591 kb on - strandat 1138.613 kb on + strandat 1138.613 kb on + strandat 1138.613 kb on + strandat 1138.613 kb on + strandat 1138.613 kb on + strandat 1138.613 kb on + strandat 1138.614 kb on - strandat 1138.663 kb on - strandat 1138.669 kb on + strandat 1138.669 kb on + strandat 1138.669 kb on + strandat 1138.669 kb on + strandat 1138.669 kb on + strandat 1138.670 kb on - strandat 1138.809 kb on - strand, within ABID97_RS05440at 1138.816 kb on + strand, within ABID97_RS05440at 1138.840 kb on + strand, within ABID97_RS05440at 1138.840 kb on + strand, within ABID97_RS05440at 1138.898 kb on + strand, within ABID97_RS05440at 1138.898 kb on + strand, within ABID97_RS05440at 1138.917 kb on + strand, within ABID97_RS05440at 1139.048 kb on - strand, within ABID97_RS05445at 1139.660 kb on + strand, within ABID97_RS05450at 1139.660 kb on + strand, within ABID97_RS05450at 1139.660 kb on + strand, within ABID97_RS05450at 1139.660 kb on + strand, within ABID97_RS05450at 1139.660 kb on + strand, within ABID97_RS05450at 1139.660 kb on + strand, within ABID97_RS05450at 1139.660 kb on + strand, within ABID97_RS05450at 1139.661 kb on - strand, within ABID97_RS05450at 1139.661 kb on - strand, within ABID97_RS05450at 1139.661 kb on - strand, within ABID97_RS05450at 1139.661 kb on - strand, within ABID97_RS05450at 1139.661 kb on - strand, within ABID97_RS05450at 1139.661 kb on - strand, within ABID97_RS05450at 1139.661 kb on - strand, within ABID97_RS05450at 1139.682 kb on - strand, within ABID97_RS05450at 1139.684 kb on + strand, within ABID97_RS05450at 1139.684 kb on + strand, within ABID97_RS05450at 1139.684 kb on + strand, within ABID97_RS05450at 1139.684 kb on + strand, within ABID97_RS05450at 1139.684 kb on + strand, within ABID97_RS05450at 1139.684 kb on + strand, within ABID97_RS05450at 1139.684 kb on + strand, within ABID97_RS05450at 1139.684 kb on + strand, within ABID97_RS05450at 1139.684 kb on + strand, within ABID97_RS05450at 1139.684 kb on + strand, within ABID97_RS05450at 1139.685 kb on - strand, within ABID97_RS05450at 1139.685 kb on - strand, within ABID97_RS05450at 1139.685 kb on - strand, within ABID97_RS05450at 1139.685 kb on - strand, within ABID97_RS05450at 1139.685 kb on - strand, within ABID97_RS05450at 1139.685 kb on - strand, within ABID97_RS05450at 1139.685 kb on - strand, within ABID97_RS05450at 1139.685 kb on - strand, within ABID97_RS05450at 1139.685 kb on - strand, within ABID97_RS05450at 1139.685 kb on - strand, within ABID97_RS05450at 1139.685 kb on - strand, within ABID97_RS05450at 1139.685 kb on - strand, within ABID97_RS05450at 1139.721 kb on - strand, within ABID97_RS05450at 1139.721 kb on - strand, within ABID97_RS05450at 1139.721 kb on - strand, within ABID97_RS05450at 1139.721 kb on - strand, within ABID97_RS05450at 1139.778 kb on - strand, within ABID97_RS05450at 1139.778 kb on - strand, within ABID97_RS05450at 1139.873 kb on + strand, within ABID97_RS05450

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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1,137,751 + ABID97_RS05430 0.39 +0.4
1,137,751 + ABID97_RS05430 0.39 +0.1
1,137,751 + ABID97_RS05430 0.39 +0.7
1,137,751 + ABID97_RS05430 0.39 -0.6
1,137,751 + ABID97_RS05430 0.39 -0.8
1,137,752 - ABID97_RS05430 0.40 -0.4
1,137,752 - ABID97_RS05430 0.40 -0.1
1,137,752 - ABID97_RS05430 0.40 -0.6
1,137,752 - ABID97_RS05430 0.40 +0.1
1,137,752 - ABID97_RS05430 0.40 -0.8
1,137,752 - ABID97_RS05430 0.40 +1.3
1,137,752 - ABID97_RS05430 0.40 +0.8
1,137,752 - ABID97_RS05430 0.40 +0.1
1,137,752 - ABID97_RS05430 0.40 -1.8
1,137,752 - ABID97_RS05430 0.40 -0.3
1,137,752 - ABID97_RS05430 0.40 -0.1
1,137,832 + ABID97_RS05430 0.77 +0.6
1,137,832 + ABID97_RS05430 0.77 +0.3
1,137,832 + ABID97_RS05430 0.77 +0.0
1,137,832 + ABID97_RS05430 0.77 +0.7
1,137,832 + ABID97_RS05430 0.77 -1.3
1,137,832 + ABID97_RS05430 0.77 +0.4
1,137,832 + ABID97_RS05430 0.77 +0.6
1,137,832 + ABID97_RS05430 0.77 +0.5
1,137,832 + ABID97_RS05430 0.77 -0.7
1,137,832 + ABID97_RS05430 0.77 +0.1
1,137,832 + ABID97_RS05430 0.77 -0.1
1,137,832 + ABID97_RS05430 0.77 -0.4
1,137,832 + ABID97_RS05430 0.77 +0.4
1,137,832 + ABID97_RS05430 0.77 -0.6
1,137,832 + ABID97_RS05430 0.77 +0.5
1,137,833 - ABID97_RS05430 0.77 -0.6
1,137,833 - ABID97_RS05430 0.77 +0.5
1,137,833 - ABID97_RS05430 0.77 +0.0
1,137,833 - ABID97_RS05430 0.77 +1.6
1,137,833 - ABID97_RS05430 0.77 -0.7
1,137,833 - ABID97_RS05430 0.77 -0.6
1,137,833 - ABID97_RS05430 0.77 +0.2
1,137,833 - ABID97_RS05430 0.77 -0.4
1,137,833 - ABID97_RS05430 0.77 +0.6
1,137,833 - ABID97_RS05430 0.77 -0.1
1,137,833 - ABID97_RS05430 0.77 +0.4
1,137,833 - ABID97_RS05430 0.77 -0.2
1,137,833 - ABID97_RS05430 0.77 -0.7
1,137,833 - ABID97_RS05430 0.77 +0.2
1,137,835 - ABID97_RS05430 0.78 +0.6
1,137,944 + +1.0
1,137,944 + -0.2
1,137,944 + +0.4
1,137,945 - +1.3
1,137,945 - +0.3
1,137,981 + +0.1
1,137,981 + +0.4
1,137,981 + -0.9
1,137,982 - -0.1
1,137,982 - +0.5
1,137,982 - +0.1
1,137,982 - -0.2
1,138,129 + -0.3
1,138,130 - +0.9
1,138,186 + -0.7
1,138,187 - +0.2
1,138,258 - +1.6
1,138,258 - +1.0
1,138,258 - +0.2
1,138,258 - -0.0
1,138,263 + -0.4
1,138,263 + -0.3
1,138,263 + -0.3
1,138,263 + -0.2
1,138,264 - +0.4
1,138,264 - +0.6
1,138,317 + ABID97_RS05435 0.24 -0.3
1,138,318 - ABID97_RS05435 0.25 +0.4
1,138,318 - ABID97_RS05435 0.25 +0.1
1,138,318 - ABID97_RS05435 0.25 -1.3
1,138,318 - ABID97_RS05435 0.25 -0.3
1,138,318 - ABID97_RS05435 0.25 +0.6
1,138,339 + ABID97_RS05435 0.32 -0.2
1,138,340 - ABID97_RS05435 0.32 -0.5
1,138,340 - ABID97_RS05435 0.32 +1.1
1,138,369 + ABID97_RS05435 0.42 -0.1
1,138,369 + ABID97_RS05435 0.42 +0.1
1,138,369 + ABID97_RS05435 0.42 +0.1
1,138,369 + ABID97_RS05435 0.42 -0.4
1,138,369 + ABID97_RS05435 0.42 -0.0
1,138,370 - ABID97_RS05435 0.42 +0.7
1,138,370 - ABID97_RS05435 0.42 +0.5
1,138,370 - ABID97_RS05435 0.42 -0.6
1,138,370 - ABID97_RS05435 0.42 +0.2
1,138,404 + ABID97_RS05435 0.53 +0.4
1,138,404 + ABID97_RS05435 0.53 +0.1
1,138,405 - ABID97_RS05435 0.53 +0.1
1,138,405 - ABID97_RS05435 0.53 -0.2
1,138,405 - ABID97_RS05435 0.53 +0.1
1,138,405 - ABID97_RS05435 0.53 +1.3
1,138,405 - ABID97_RS05435 0.53 -1.7
1,138,405 - ABID97_RS05435 0.53 -1.1
1,138,405 - ABID97_RS05435 0.53 +0.1
1,138,405 - ABID97_RS05435 0.53 +1.1
1,138,405 - ABID97_RS05435 0.53 +1.7
1,138,406 + ABID97_RS05435 0.54 +1.3
1,138,406 + ABID97_RS05435 0.54 +0.2
1,138,406 + ABID97_RS05435 0.54 +0.3
1,138,406 + ABID97_RS05435 0.54 +0.1
1,138,406 + ABID97_RS05435 0.54 +0.1
1,138,407 - ABID97_RS05435 0.54 -0.8
1,138,407 - ABID97_RS05435 0.54 +1.0
1,138,407 - ABID97_RS05435 0.54 -0.2
1,138,407 - ABID97_RS05435 0.54 +0.1
1,138,407 - ABID97_RS05435 0.54 +0.1
1,138,410 + ABID97_RS05435 0.55 +0.4
1,138,410 + ABID97_RS05435 0.55 +0.1
1,138,410 + ABID97_RS05435 0.55 +0.4
1,138,410 + ABID97_RS05435 0.55 +0.8
1,138,410 + ABID97_RS05435 0.55 +0.0
1,138,411 - ABID97_RS05435 0.55 +0.4
1,138,411 - ABID97_RS05435 0.55 +0.5
1,138,411 - ABID97_RS05435 0.55 -0.2
1,138,411 - ABID97_RS05435 0.55 -0.7
1,138,411 - ABID97_RS05435 0.55 -1.8
1,138,411 - ABID97_RS05435 0.55 -0.2
1,138,411 - ABID97_RS05435 0.55 +1.0
1,138,543 + -0.9
1,138,543 + -0.2
1,138,544 - -0.7
1,138,544 - -0.4
1,138,590 + +0.3
1,138,590 + -0.1
1,138,590 + +0.1
1,138,590 + +0.2
1,138,590 + -0.4
1,138,590 + -0.9
1,138,591 - +0.9
1,138,591 - -0.3
1,138,591 - -1.7
1,138,591 - -0.6
1,138,613 + +0.1
1,138,613 + -0.0
1,138,613 + +0.5
1,138,613 + +0.1
1,138,613 + +0.2
1,138,613 + +0.3
1,138,614 - -0.1
1,138,663 - +0.1
1,138,669 + -0.5
1,138,669 + +0.3
1,138,669 + +0.5
1,138,669 + +0.3
1,138,669 + +0.2
1,138,670 - -0.4
1,138,809 - ABID97_RS05440 0.41 -1.7
1,138,816 + ABID97_RS05440 0.43 -0.1
1,138,840 + ABID97_RS05440 0.50 -0.1
1,138,840 + ABID97_RS05440 0.50 -0.1
1,138,898 + ABID97_RS05440 0.66 +0.4
1,138,898 + ABID97_RS05440 0.66 +0.8
1,138,917 + ABID97_RS05440 0.72 -0.5
1,139,048 - ABID97_RS05445 0.21 +0.3
1,139,660 + ABID97_RS05450 0.19 -0.4
1,139,660 + ABID97_RS05450 0.19 +1.0
1,139,660 + ABID97_RS05450 0.19 +0.1
1,139,660 + ABID97_RS05450 0.19 +0.5
1,139,660 + ABID97_RS05450 0.19 -0.1
1,139,660 + ABID97_RS05450 0.19 +0.2
1,139,660 + ABID97_RS05450 0.19 +0.5
1,139,661 - ABID97_RS05450 0.19 +0.5
1,139,661 - ABID97_RS05450 0.19 +0.1
1,139,661 - ABID97_RS05450 0.19 +1.0
1,139,661 - ABID97_RS05450 0.19 +0.4
1,139,661 - ABID97_RS05450 0.19 -0.6
1,139,661 - ABID97_RS05450 0.19 -0.4
1,139,661 - ABID97_RS05450 0.19 +1.3
1,139,682 - ABID97_RS05450 0.20 +0.3
1,139,684 + ABID97_RS05450 0.20 +0.4
1,139,684 + ABID97_RS05450 0.20 +1.2
1,139,684 + ABID97_RS05450 0.20 -0.6
1,139,684 + ABID97_RS05450 0.20 +1.0
1,139,684 + ABID97_RS05450 0.20 +0.0
1,139,684 + ABID97_RS05450 0.20 -0.1
1,139,684 + ABID97_RS05450 0.20 +0.4
1,139,684 + ABID97_RS05450 0.20 +0.5
1,139,684 + ABID97_RS05450 0.20 +0.4
1,139,684 + ABID97_RS05450 0.20 +0.3
1,139,685 - ABID97_RS05450 0.20 -0.2
1,139,685 - ABID97_RS05450 0.20 +0.9
1,139,685 - ABID97_RS05450 0.20 +1.7
1,139,685 - ABID97_RS05450 0.20 -0.4
1,139,685 - ABID97_RS05450 0.20 +1.0
1,139,685 - ABID97_RS05450 0.20 +0.5
1,139,685 - ABID97_RS05450 0.20 -0.5
1,139,685 - ABID97_RS05450 0.20 +0.2
1,139,685 - ABID97_RS05450 0.20 +0.4
1,139,685 - ABID97_RS05450 0.20 +0.5
1,139,685 - ABID97_RS05450 0.20 +0.4
1,139,685 - ABID97_RS05450 0.20 +0.8
1,139,721 - ABID97_RS05450 0.23 -0.6
1,139,721 - ABID97_RS05450 0.23 -0.0
1,139,721 - ABID97_RS05450 0.23 +1.0
1,139,721 - ABID97_RS05450 0.23 +1.2
1,139,778 - ABID97_RS05450 0.26 +0.3
1,139,778 - ABID97_RS05450 0.26 +0.0
1,139,873 + ABID97_RS05450 0.33 -0.5

Or see this region's nucleotide sequence