Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04070

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04069 and H281DRAFT_04070 are separated by 64 nucleotidesH281DRAFT_04070 and H281DRAFT_04071 overlap by 1 nucleotides H281DRAFT_04069: H281DRAFT_04069 - L-aspartate oxidase, at 169,390 to 170,988 _04069 H281DRAFT_04070: H281DRAFT_04070 - nicotinate-nucleotide pyrophosphorylase [carboxylating], at 171,053 to 171,982 _04070 H281DRAFT_04071: H281DRAFT_04071 - quinolinate synthetase, at 171,982 to 173,169 _04071 Position (kb) 171 172Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 170.073 kb on + strand, within H281DRAFT_04069at 170.074 kb on - strand, within H281DRAFT_04069at 170.279 kb on + strand, within H281DRAFT_04069at 170.279 kb on + strand, within H281DRAFT_04069at 170.280 kb on - strand, within H281DRAFT_04069at 170.280 kb on - strand, within H281DRAFT_04069at 170.280 kb on - strand, within H281DRAFT_04069at 170.280 kb on - strand, within H281DRAFT_04069at 170.290 kb on + strand, within H281DRAFT_04069at 170.291 kb on - strand, within H281DRAFT_04069at 170.291 kb on - strand, within H281DRAFT_04069at 170.291 kb on - strand, within H281DRAFT_04069at 170.294 kb on + strand, within H281DRAFT_04069at 170.294 kb on + strand, within H281DRAFT_04069at 170.294 kb on + strand, within H281DRAFT_04069at 170.294 kb on + strand, within H281DRAFT_04069at 170.295 kb on - strand, within H281DRAFT_04069at 170.295 kb on - strand, within H281DRAFT_04069at 170.295 kb on - strand, within H281DRAFT_04069at 170.299 kb on - strand, within H281DRAFT_04069at 170.379 kb on + strand, within H281DRAFT_04069at 170.416 kb on + strand, within H281DRAFT_04069at 170.416 kb on + strand, within H281DRAFT_04069at 170.416 kb on + strand, within H281DRAFT_04069at 170.416 kb on + strand, within H281DRAFT_04069at 170.416 kb on + strand, within H281DRAFT_04069at 170.416 kb on + strand, within H281DRAFT_04069at 170.417 kb on - strand, within H281DRAFT_04069at 170.436 kb on + strand, within H281DRAFT_04069at 170.473 kb on + strand, within H281DRAFT_04069at 170.473 kb on + strand, within H281DRAFT_04069at 170.474 kb on - strand, within H281DRAFT_04069at 170.474 kb on - strand, within H281DRAFT_04069at 170.710 kb on + strand, within H281DRAFT_04069at 170.710 kb on + strand, within H281DRAFT_04069at 170.710 kb on + strand, within H281DRAFT_04069at 170.711 kb on - strand, within H281DRAFT_04069at 170.711 kb on - strand, within H281DRAFT_04069at 170.768 kb on + strand, within H281DRAFT_04069at 170.791 kb on + strand, within H281DRAFT_04069at 170.791 kb on + strand, within H281DRAFT_04069at 170.791 kb on + strand, within H281DRAFT_04069at 170.792 kb on - strand, within H281DRAFT_04069at 170.794 kb on + strand, within H281DRAFT_04069at 170.849 kb on + strandat 170.849 kb on + strandat 170.849 kb on + strandat 170.850 kb on - strandat 170.850 kb on - strandat 170.850 kb on - strandat 170.850 kb on - strandat 171.035 kb on + strandat 171.036 kb on - strandat 171.072 kb on + strandat 171.408 kb on + strand, within H281DRAFT_04070at 171.409 kb on - strand, within H281DRAFT_04070at 171.454 kb on - strand, within H281DRAFT_04070at 171.514 kb on + strand, within H281DRAFT_04070at 171.534 kb on + strand, within H281DRAFT_04070at 171.564 kb on - strand, within H281DRAFT_04070at 171.602 kb on - strand, within H281DRAFT_04070at 171.886 kb on - strand, within H281DRAFT_04070at 171.936 kb on + strandat 172.004 kb on + strandat 172.005 kb on - strandat 172.005 kb on - strandat 172.054 kb on - strandat 172.077 kb on + strandat 172.077 kb on + strandat 172.077 kb on + strandat 172.077 kb on + strandat 172.077 kb on + strandat 172.078 kb on - strandat 172.078 kb on - strandat 172.135 kb on - strand, within H281DRAFT_04071at 172.179 kb on + strand, within H281DRAFT_04071at 172.234 kb on - strand, within H281DRAFT_04071at 172.234 kb on - strand, within H281DRAFT_04071at 172.279 kb on - strand, within H281DRAFT_04071at 172.279 kb on - strand, within H281DRAFT_04071at 172.533 kb on - strandat 172.533 kb on - strand, within H281DRAFT_04071at 172.720 kb on + strand, within H281DRAFT_04071at 172.721 kb on - strand, within H281DRAFT_04071at 172.937 kb on + strand, within H281DRAFT_04071at 172.937 kb on + strand, within H281DRAFT_04071at 172.937 kb on + strand, within H281DRAFT_04071at 172.937 kb on + strand, within H281DRAFT_04071at 172.938 kb on - strand, within H281DRAFT_04071at 172.938 kb on - strand, within H281DRAFT_04071at 172.938 kb on - strand, within H281DRAFT_04071at 172.938 kb on - strand, within H281DRAFT_04071at 172.940 kb on + strand, within H281DRAFT_04071at 172.940 kb on + strand, within H281DRAFT_04071at 172.940 kb on + strand, within H281DRAFT_04071at 172.940 kb on + strand, within H281DRAFT_04071at 172.941 kb on - strand, within H281DRAFT_04071at 172.941 kb on - strand, within H281DRAFT_04071

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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170,073 + H281DRAFT_04069 0.43 -0.7
170,074 - H281DRAFT_04069 0.43 +0.6
170,279 + H281DRAFT_04069 0.56 -0.3
170,279 + H281DRAFT_04069 0.56 -0.4
170,280 - H281DRAFT_04069 0.56 -0.2
170,280 - H281DRAFT_04069 0.56 +0.3
170,280 - H281DRAFT_04069 0.56 -0.9
170,280 - H281DRAFT_04069 0.56 -1.1
170,290 + H281DRAFT_04069 0.56 -1.0
170,291 - H281DRAFT_04069 0.56 -1.0
170,291 - H281DRAFT_04069 0.56 -0.0
170,291 - H281DRAFT_04069 0.56 -0.8
170,294 + H281DRAFT_04069 0.57 +0.1
170,294 + H281DRAFT_04069 0.57 -1.5
170,294 + H281DRAFT_04069 0.57 -1.6
170,294 + H281DRAFT_04069 0.57 -1.0
170,295 - H281DRAFT_04069 0.57 -1.2
170,295 - H281DRAFT_04069 0.57 -0.8
170,295 - H281DRAFT_04069 0.57 -1.5
170,299 - H281DRAFT_04069 0.57 -0.5
170,379 + H281DRAFT_04069 0.62 -1.4
170,416 + H281DRAFT_04069 0.64 -0.4
170,416 + H281DRAFT_04069 0.64 -0.6
170,416 + H281DRAFT_04069 0.64 -0.4
170,416 + H281DRAFT_04069 0.64 -0.4
170,416 + H281DRAFT_04069 0.64 -1.1
170,416 + H281DRAFT_04069 0.64 -1.5
170,417 - H281DRAFT_04069 0.64 -2.6
170,436 + H281DRAFT_04069 0.65 -0.7
170,473 + H281DRAFT_04069 0.68 -1.0
170,473 + H281DRAFT_04069 0.68 -0.6
170,474 - H281DRAFT_04069 0.68 +0.1
170,474 - H281DRAFT_04069 0.68 -0.7
170,710 + H281DRAFT_04069 0.83 -1.2
170,710 + H281DRAFT_04069 0.83 -0.2
170,710 + H281DRAFT_04069 0.83 -1.8
170,711 - H281DRAFT_04069 0.83 -1.6
170,711 - H281DRAFT_04069 0.83 -1.2
170,768 + H281DRAFT_04069 0.86 -0.3
170,791 + H281DRAFT_04069 0.88 -2.0
170,791 + H281DRAFT_04069 0.88 -0.4
170,791 + H281DRAFT_04069 0.88 -0.7
170,792 - H281DRAFT_04069 0.88 -1.0
170,794 + H281DRAFT_04069 0.88 +0.4
170,849 + -0.8
170,849 + -0.3
170,849 + +1.0
170,850 - -2.4
170,850 - -0.7
170,850 - -0.5
170,850 - -1.2
171,035 + +0.1
171,036 - +0.1
171,072 + -2.0
171,408 + H281DRAFT_04070 0.38 -1.1
171,409 - H281DRAFT_04070 0.38 -2.5
171,454 - H281DRAFT_04070 0.43 -1.4
171,514 + H281DRAFT_04070 0.50 -1.1
171,534 + H281DRAFT_04070 0.52 -0.1
171,564 - H281DRAFT_04070 0.55 +0.2
171,602 - H281DRAFT_04070 0.59 -1.1
171,886 - H281DRAFT_04070 0.90 -2.8
171,936 + -0.5
172,004 + -0.9
172,005 - -1.3
172,005 - -0.6
172,054 - -1.0
172,077 + -0.2
172,077 + -0.9
172,077 + -1.4
172,077 + -1.3
172,077 + -4.5
172,078 - -1.6
172,078 - -1.3
172,135 - H281DRAFT_04071 0.13 -2.2
172,179 + H281DRAFT_04071 0.17 -1.1
172,234 - H281DRAFT_04071 0.21 -1.5
172,234 - H281DRAFT_04071 0.21 -1.9
172,279 - H281DRAFT_04071 0.25 -0.7
172,279 - H281DRAFT_04071 0.25 -1.8
172,533 - +1.0
172,533 - H281DRAFT_04071 0.46 -1.0
172,720 + H281DRAFT_04071 0.62 -1.5
172,721 - H281DRAFT_04071 0.62 -2.2
172,937 + H281DRAFT_04071 0.80 -1.1
172,937 + H281DRAFT_04071 0.80 -0.0
172,937 + H281DRAFT_04071 0.80 -1.6
172,937 + H281DRAFT_04071 0.80 +0.4
172,938 - H281DRAFT_04071 0.80 -1.4
172,938 - H281DRAFT_04071 0.80 -2.1
172,938 - H281DRAFT_04071 0.80 -2.4
172,938 - H281DRAFT_04071 0.80 -1.9
172,940 + H281DRAFT_04071 0.81 -0.2
172,940 + H281DRAFT_04071 0.81 -1.4
172,940 + H281DRAFT_04071 0.81 -1.8
172,940 + H281DRAFT_04071 0.81 -1.8
172,941 - H281DRAFT_04071 0.81 -2.7
172,941 - H281DRAFT_04071 0.81 -1.4

Or see this region's nucleotide sequence