Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00755

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00754 and H281DRAFT_00755 are separated by 58 nucleotidesH281DRAFT_00755 and H281DRAFT_00756 are separated by 140 nucleotides H281DRAFT_00754: H281DRAFT_00754 - Nucleoside-diphosphate-sugar epimerase, at 846,114 to 847,112 _00754 H281DRAFT_00755: H281DRAFT_00755 - transcriptional regulator, TetR family, at 847,171 to 848,166 _00755 H281DRAFT_00756: H281DRAFT_00756 - Enoyl-CoA hydratase/carnithine racemase, at 848,307 to 849,437 _00756 Position (kb) 847 848 849Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 846.206 kb on - strandat 846.294 kb on + strand, within H281DRAFT_00754at 846.295 kb on - strand, within H281DRAFT_00754at 846.385 kb on + strand, within H281DRAFT_00754at 846.385 kb on + strand, within H281DRAFT_00754at 846.386 kb on - strand, within H281DRAFT_00754at 846.452 kb on - strand, within H281DRAFT_00754at 846.471 kb on - strand, within H281DRAFT_00754at 846.471 kb on - strand, within H281DRAFT_00754at 846.471 kb on - strand, within H281DRAFT_00754at 846.505 kb on + strand, within H281DRAFT_00754at 846.529 kb on - strand, within H281DRAFT_00754at 846.576 kb on + strand, within H281DRAFT_00754at 846.613 kb on + strandat 846.766 kb on + strand, within H281DRAFT_00754at 846.767 kb on - strandat 846.869 kb on - strandat 846.886 kb on + strand, within H281DRAFT_00754at 846.887 kb on - strand, within H281DRAFT_00754at 846.923 kb on + strand, within H281DRAFT_00754at 846.923 kb on + strand, within H281DRAFT_00754at 847.118 kb on + strandat 847.320 kb on + strand, within H281DRAFT_00755at 847.320 kb on + strand, within H281DRAFT_00755at 847.400 kb on - strand, within H281DRAFT_00755at 847.453 kb on + strand, within H281DRAFT_00755at 847.534 kb on + strand, within H281DRAFT_00755at 847.534 kb on + strand, within H281DRAFT_00755at 847.534 kb on + strand, within H281DRAFT_00755at 847.535 kb on - strand, within H281DRAFT_00755at 847.568 kb on - strand, within H281DRAFT_00755at 847.597 kb on + strand, within H281DRAFT_00755at 847.598 kb on - strand, within H281DRAFT_00755at 848.183 kb on + strandat 848.334 kb on - strandat 848.353 kb on - strandat 848.357 kb on - strandat 848.542 kb on - strand, within H281DRAFT_00756at 848.542 kb on - strand, within H281DRAFT_00756at 848.637 kb on + strand, within H281DRAFT_00756at 848.637 kb on + strand, within H281DRAFT_00756at 848.637 kb on + strand, within H281DRAFT_00756at 848.638 kb on - strand, within H281DRAFT_00756at 848.787 kb on - strand, within H281DRAFT_00756at 848.787 kb on - strand, within H281DRAFT_00756at 848.892 kb on + strand, within H281DRAFT_00756at 848.892 kb on + strand, within H281DRAFT_00756at 848.893 kb on - strand, within H281DRAFT_00756at 848.893 kb on - strand, within H281DRAFT_00756at 848.893 kb on - strand, within H281DRAFT_00756at 848.998 kb on - strand, within H281DRAFT_00756at 849.155 kb on - strand, within H281DRAFT_00756

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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846,206 - +0.1
846,294 + H281DRAFT_00754 0.18 +0.5
846,295 - H281DRAFT_00754 0.18 +0.2
846,385 + H281DRAFT_00754 0.27 +0.7
846,385 + H281DRAFT_00754 0.27 +0.4
846,386 - H281DRAFT_00754 0.27 +0.0
846,452 - H281DRAFT_00754 0.34 +0.6
846,471 - H281DRAFT_00754 0.36 -0.6
846,471 - H281DRAFT_00754 0.36 +1.6
846,471 - H281DRAFT_00754 0.36 +0.0
846,505 + H281DRAFT_00754 0.39 +0.3
846,529 - H281DRAFT_00754 0.42 +0.6
846,576 + H281DRAFT_00754 0.46 -1.4
846,613 + +2.2
846,766 + H281DRAFT_00754 0.65 +0.2
846,767 - +0.6
846,869 - +1.6
846,886 + H281DRAFT_00754 0.77 +0.4
846,887 - H281DRAFT_00754 0.77 -0.1
846,923 + H281DRAFT_00754 0.81 +0.4
846,923 + H281DRAFT_00754 0.81 -0.1
847,118 + -0.6
847,320 + H281DRAFT_00755 0.15 -0.9
847,320 + H281DRAFT_00755 0.15 -0.8
847,400 - H281DRAFT_00755 0.23 -1.1
847,453 + H281DRAFT_00755 0.28 -1.7
847,534 + H281DRAFT_00755 0.36 -1.7
847,534 + H281DRAFT_00755 0.36 -2.1
847,534 + H281DRAFT_00755 0.36 -2.5
847,535 - H281DRAFT_00755 0.37 -1.9
847,568 - H281DRAFT_00755 0.40 +1.4
847,597 + H281DRAFT_00755 0.43 -3.8
847,598 - H281DRAFT_00755 0.43 -2.0
848,183 + +0.4
848,334 - -1.2
848,353 - -1.1
848,357 - -0.6
848,542 - H281DRAFT_00756 0.21 +0.7
848,542 - H281DRAFT_00756 0.21 +0.1
848,637 + H281DRAFT_00756 0.29 -0.4
848,637 + H281DRAFT_00756 0.29 +1.0
848,637 + H281DRAFT_00756 0.29 +0.7
848,638 - H281DRAFT_00756 0.29 +0.2
848,787 - H281DRAFT_00756 0.42 -1.3
848,787 - H281DRAFT_00756 0.42 +0.5
848,892 + H281DRAFT_00756 0.52 -0.2
848,892 + H281DRAFT_00756 0.52 -0.4
848,893 - H281DRAFT_00756 0.52 +0.3
848,893 - H281DRAFT_00756 0.52 -0.1
848,893 - H281DRAFT_00756 0.52 +0.2
848,998 - H281DRAFT_00756 0.61 -0.1
849,155 - H281DRAFT_00756 0.75 -0.9

Or see this region's nucleotide sequence