Experiment: Choline chloride 450 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4313 and Shewana3_4314 are separated by 55 nucleotides Shewana3_4314 and Shewana3_4315 are separated by 93 nucleotides Shewana3_4315 and Shewana3_4316 overlap by 4 nucleotides Shewana3_4316 and Shewana3_4317 are separated by 204 nucleotides
Shewana3_4313: Shewana3_4313 - mercuric transport protein periplasmic component (RefSeq), at 202,785 to 203,060
_4313
Shewana3_4314: Shewana3_4314 - mercuric transporter MerT (RefSeq), at 203,116 to 203,463
_4314
Shewana3_4315: Shewana3_4315 - MerR family transcriptional regulator (RefSeq), at 203,557 to 203,949
_4315
Shewana3_4316: Shewana3_4316 - phage integrase family protein (RefSeq), at 203,946 to 204,968
_4316
Shewana3_4317: Shewana3_4317 - chromosome segregation ATPases-like protein (RefSeq), at 205,173 to 206,222
_4317
Position (kb)
203
204
205 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 202.973 kb on - strand, within Shewana3_4313 at 203.242 kb on + strand, within Shewana3_4314 at 203.250 kb on - strand, within Shewana3_4314 at 203.390 kb on + strand, within Shewana3_4314 at 203.395 kb on + strand, within Shewana3_4314 at 203.398 kb on - strand, within Shewana3_4314 at 203.403 kb on - strand, within Shewana3_4314 at 203.403 kb on - strand, within Shewana3_4314 at 203.944 kb on + strand at 203.962 kb on - strand at 204.144 kb on + strand, within Shewana3_4316 at 204.252 kb on - strand, within Shewana3_4316 at 204.257 kb on + strand, within Shewana3_4316 at 204.328 kb on + strand, within Shewana3_4316 at 204.440 kb on - strand, within Shewana3_4316 at 204.672 kb on - strand, within Shewana3_4316 at 204.677 kb on - strand, within Shewana3_4316 at 204.711 kb on + strand, within Shewana3_4316 at 204.716 kb on + strand, within Shewana3_4316 at 204.716 kb on + strand, within Shewana3_4316 at 204.724 kb on + strand, within Shewana3_4316 at 204.842 kb on - strand, within Shewana3_4316 at 205.237 kb on + strand at 205.269 kb on + strand at 205.277 kb on - strand at 205.379 kb on + strand, within Shewana3_4317 at 205.521 kb on + strand, within Shewana3_4317 at 205.521 kb on - strand, within Shewana3_4317 at 205.569 kb on + strand, within Shewana3_4317 at 205.569 kb on + strand, within Shewana3_4317 at 205.709 kb on + strand, within Shewana3_4317 at 205.828 kb on - strand, within Shewana3_4317 at 205.831 kb on + strand, within Shewana3_4317 at 205.848 kb on - strand, within Shewana3_4317 at 205.906 kb on - strand, within Shewana3_4317 at 205.916 kb on - strand, within Shewana3_4317 at 205.952 kb on + strand, within Shewana3_4317
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 450 mM remove 202,973 - Shewana3_4313 0.68 -0.3 203,242 + Shewana3_4314 0.36 -2.2 203,250 - Shewana3_4314 0.39 -0.6 203,390 + Shewana3_4314 0.79 -0.1 203,395 + Shewana3_4314 0.80 -0.6 203,398 - Shewana3_4314 0.81 -0.3 203,403 - Shewana3_4314 0.82 -0.7 203,403 - Shewana3_4314 0.82 -0.3 203,944 + +2.8 203,962 - -0.6 204,144 + Shewana3_4316 0.19 -1.2 204,252 - Shewana3_4316 0.30 -0.0 204,257 + Shewana3_4316 0.30 -0.7 204,328 + Shewana3_4316 0.37 -0.2 204,440 - Shewana3_4316 0.48 -0.8 204,672 - Shewana3_4316 0.71 -0.5 204,677 - Shewana3_4316 0.71 -0.8 204,711 + Shewana3_4316 0.75 -0.6 204,716 + Shewana3_4316 0.75 -1.0 204,716 + Shewana3_4316 0.75 -0.5 204,724 + Shewana3_4316 0.76 -0.2 204,842 - Shewana3_4316 0.88 +0.2 205,237 + +0.6 205,269 + -0.8 205,277 - -0.1 205,379 + Shewana3_4317 0.20 -1.2 205,521 + Shewana3_4317 0.33 +0.8 205,521 - Shewana3_4317 0.33 -3.7 205,569 + Shewana3_4317 0.38 -0.8 205,569 + Shewana3_4317 0.38 -0.6 205,709 + Shewana3_4317 0.51 -1.3 205,828 - Shewana3_4317 0.62 +0.8 205,831 + Shewana3_4317 0.63 +0.9 205,848 - Shewana3_4317 0.64 -1.8 205,906 - Shewana3_4317 0.70 +1.7 205,916 - Shewana3_4317 0.71 +0.5 205,952 + Shewana3_4317 0.74 -0.5
Or see this region's nucleotide sequence