Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4316

Experiment: Choline chloride 450 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4313 and Shewana3_4314 are separated by 55 nucleotidesShewana3_4314 and Shewana3_4315 are separated by 93 nucleotidesShewana3_4315 and Shewana3_4316 overlap by 4 nucleotidesShewana3_4316 and Shewana3_4317 are separated by 204 nucleotides Shewana3_4313: Shewana3_4313 - mercuric transport protein periplasmic component (RefSeq), at 202,785 to 203,060 _4313 Shewana3_4314: Shewana3_4314 - mercuric transporter MerT (RefSeq), at 203,116 to 203,463 _4314 Shewana3_4315: Shewana3_4315 - MerR family transcriptional regulator (RefSeq), at 203,557 to 203,949 _4315 Shewana3_4316: Shewana3_4316 - phage integrase family protein (RefSeq), at 203,946 to 204,968 _4316 Shewana3_4317: Shewana3_4317 - chromosome segregation ATPases-like protein (RefSeq), at 205,173 to 206,222 _4317 Position (kb) 203 204 205Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 202.973 kb on - strand, within Shewana3_4313at 203.242 kb on + strand, within Shewana3_4314at 203.250 kb on - strand, within Shewana3_4314at 203.390 kb on + strand, within Shewana3_4314at 203.395 kb on + strand, within Shewana3_4314at 203.398 kb on - strand, within Shewana3_4314at 203.403 kb on - strand, within Shewana3_4314at 203.403 kb on - strand, within Shewana3_4314at 203.944 kb on + strandat 203.962 kb on - strandat 204.144 kb on + strand, within Shewana3_4316at 204.252 kb on - strand, within Shewana3_4316at 204.257 kb on + strand, within Shewana3_4316at 204.328 kb on + strand, within Shewana3_4316at 204.440 kb on - strand, within Shewana3_4316at 204.672 kb on - strand, within Shewana3_4316at 204.677 kb on - strand, within Shewana3_4316at 204.711 kb on + strand, within Shewana3_4316at 204.716 kb on + strand, within Shewana3_4316at 204.716 kb on + strand, within Shewana3_4316at 204.724 kb on + strand, within Shewana3_4316at 204.842 kb on - strand, within Shewana3_4316at 205.237 kb on + strandat 205.269 kb on + strandat 205.277 kb on - strandat 205.379 kb on + strand, within Shewana3_4317at 205.521 kb on + strand, within Shewana3_4317at 205.521 kb on - strand, within Shewana3_4317at 205.569 kb on + strand, within Shewana3_4317at 205.569 kb on + strand, within Shewana3_4317at 205.709 kb on + strand, within Shewana3_4317at 205.828 kb on - strand, within Shewana3_4317at 205.831 kb on + strand, within Shewana3_4317at 205.848 kb on - strand, within Shewana3_4317at 205.906 kb on - strand, within Shewana3_4317at 205.916 kb on - strand, within Shewana3_4317at 205.952 kb on + strand, within Shewana3_4317

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 450 mM
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202,973 - Shewana3_4313 0.68 -0.3
203,242 + Shewana3_4314 0.36 -2.2
203,250 - Shewana3_4314 0.39 -0.6
203,390 + Shewana3_4314 0.79 -0.1
203,395 + Shewana3_4314 0.80 -0.6
203,398 - Shewana3_4314 0.81 -0.3
203,403 - Shewana3_4314 0.82 -0.7
203,403 - Shewana3_4314 0.82 -0.3
203,944 + +2.8
203,962 - -0.6
204,144 + Shewana3_4316 0.19 -1.2
204,252 - Shewana3_4316 0.30 -0.0
204,257 + Shewana3_4316 0.30 -0.7
204,328 + Shewana3_4316 0.37 -0.2
204,440 - Shewana3_4316 0.48 -0.8
204,672 - Shewana3_4316 0.71 -0.5
204,677 - Shewana3_4316 0.71 -0.8
204,711 + Shewana3_4316 0.75 -0.6
204,716 + Shewana3_4316 0.75 -1.0
204,716 + Shewana3_4316 0.75 -0.5
204,724 + Shewana3_4316 0.76 -0.2
204,842 - Shewana3_4316 0.88 +0.2
205,237 + +0.6
205,269 + -0.8
205,277 - -0.1
205,379 + Shewana3_4317 0.20 -1.2
205,521 + Shewana3_4317 0.33 +0.8
205,521 - Shewana3_4317 0.33 -3.7
205,569 + Shewana3_4317 0.38 -0.8
205,569 + Shewana3_4317 0.38 -0.6
205,709 + Shewana3_4317 0.51 -1.3
205,828 - Shewana3_4317 0.62 +0.8
205,831 + Shewana3_4317 0.63 +0.9
205,848 - Shewana3_4317 0.64 -1.8
205,906 - Shewana3_4317 0.70 +1.7
205,916 - Shewana3_4317 0.71 +0.5
205,952 + Shewana3_4317 0.74 -0.5

Or see this region's nucleotide sequence