Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05210

Experiment: Gentamicin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05205 and AO353_05210 are separated by 108 nucleotidesAO353_05210 and AO353_05215 are separated by 48 nucleotides AO353_05205: AO353_05205 - peptidase PmbA, at 1,143,290 to 1,144,636 _05205 AO353_05210: AO353_05210 - hypothetical protein, at 1,144,745 to 1,145,269 _05210 AO353_05215: AO353_05215 - protease TldD, at 1,145,318 to 1,146,760 _05215 Position (kb) 1144 1145 1146Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1144.023 kb on + strand, within AO353_05205at 1144.023 kb on + strand, within AO353_05205at 1144.023 kb on + strand, within AO353_05205at 1144.024 kb on - strand, within AO353_05205at 1144.024 kb on - strand, within AO353_05205at 1144.029 kb on + strand, within AO353_05205at 1144.030 kb on - strand, within AO353_05205at 1144.030 kb on - strand, within AO353_05205at 1144.128 kb on + strand, within AO353_05205at 1144.128 kb on + strand, within AO353_05205at 1144.129 kb on - strand, within AO353_05205at 1144.129 kb on - strand, within AO353_05205at 1144.129 kb on - strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strandat 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.431 kb on + strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.432 kb on - strand, within AO353_05205at 1144.438 kb on + strand, within AO353_05205at 1144.438 kb on + strand, within AO353_05205at 1144.438 kb on + strand, within AO353_05205at 1144.438 kb on + strand, within AO353_05205at 1144.439 kb on - strand, within AO353_05205at 1144.439 kb on - strand, within AO353_05205at 1144.439 kb on - strand, within AO353_05205at 1144.439 kb on - strand, within AO353_05205at 1144.758 kb on - strandat 1144.843 kb on + strand, within AO353_05210at 1144.843 kb on + strand, within AO353_05210at 1144.843 kb on + strand, within AO353_05210at 1144.843 kb on + strand, within AO353_05210at 1144.843 kb on + strand, within AO353_05210at 1144.843 kb on + strand, within AO353_05210at 1144.844 kb on - strand, within AO353_05210at 1144.844 kb on - strand, within AO353_05210at 1144.844 kb on - strand, within AO353_05210at 1144.844 kb on - strand, within AO353_05210at 1144.844 kb on - strand, within AO353_05210at 1144.844 kb on - strand, within AO353_05210at 1144.844 kb on - strand, within AO353_05210at 1144.844 kb on - strand, within AO353_05210at 1144.844 kb on - strand, within AO353_05210at 1144.844 kb on - strand, within AO353_05210at 1144.844 kb on - strand, within AO353_05210at 1144.933 kb on + strand, within AO353_05210at 1144.943 kb on - strand, within AO353_05210at 1144.943 kb on - strand, within AO353_05210at 1145.040 kb on - strand, within AO353_05210at 1145.040 kb on - strand, within AO353_05210at 1145.228 kb on + strandat 1145.228 kb on + strandat 1145.228 kb on + strandat 1145.228 kb on + strandat 1145.228 kb on + strandat 1145.228 kb on + strandat 1145.228 kb on + strandat 1145.228 kb on + strandat 1145.229 kb on - strandat 1145.229 kb on - strandat 1145.229 kb on - strandat 1145.229 kb on - strandat 1145.229 kb on - strandat 1145.229 kb on - strandat 1145.267 kb on + strandat 1145.268 kb on - strandat 1145.415 kb on - strandat 1145.512 kb on + strand, within AO353_05215at 1145.513 kb on - strand, within AO353_05215at 1145.535 kb on + strand, within AO353_05215at 1145.607 kb on + strand, within AO353_05215at 1145.607 kb on + strand, within AO353_05215at 1145.607 kb on + strand, within AO353_05215at 1145.607 kb on + strand, within AO353_05215at 1145.607 kb on + strand, within AO353_05215at 1145.607 kb on + strand, within AO353_05215at 1145.608 kb on - strand, within AO353_05215at 1145.608 kb on - strand, within AO353_05215at 1145.608 kb on - strand, within AO353_05215at 1145.667 kb on + strand, within AO353_05215at 1145.667 kb on + strand, within AO353_05215at 1145.667 kb on + strand, within AO353_05215at 1145.667 kb on + strand, within AO353_05215at 1145.667 kb on + strand, within AO353_05215at 1145.667 kb on + strand, within AO353_05215at 1145.668 kb on - strand, within AO353_05215at 1145.668 kb on - strand, within AO353_05215at 1145.668 kb on - strand, within AO353_05215at 1145.668 kb on - strand, within AO353_05215at 1145.668 kb on - strand, within AO353_05215at 1145.668 kb on - strand, within AO353_05215at 1145.668 kb on - strand, within AO353_05215at 1145.668 kb on - strand, within AO353_05215at 1145.668 kb on - strand, within AO353_05215at 1145.668 kb on - strand, within AO353_05215at 1145.680 kb on + strand, within AO353_05215at 1145.681 kb on - strand, within AO353_05215at 1145.681 kb on - strand, within AO353_05215at 1145.681 kb on - strand, within AO353_05215at 1145.703 kb on + strand, within AO353_05215at 1145.703 kb on + strand, within AO353_05215at 1145.703 kb on + strand, within AO353_05215at 1145.703 kb on + strand, within AO353_05215at 1145.704 kb on - strand, within AO353_05215at 1145.704 kb on - strand, within AO353_05215at 1145.772 kb on + strand, within AO353_05215at 1145.772 kb on + strand, within AO353_05215at 1145.772 kb on + strand, within AO353_05215at 1145.772 kb on + strand, within AO353_05215at 1145.773 kb on - strand, within AO353_05215at 1145.773 kb on - strand, within AO353_05215at 1145.773 kb on - strand, within AO353_05215at 1145.773 kb on - strand, within AO353_05215at 1145.773 kb on - strand, within AO353_05215at 1145.925 kb on + strand, within AO353_05215at 1145.925 kb on + strand, within AO353_05215at 1145.926 kb on - strand, within AO353_05215at 1145.926 kb on - strand, within AO353_05215at 1146.090 kb on + strand, within AO353_05215at 1146.090 kb on + strand, within AO353_05215at 1146.090 kb on + strand, within AO353_05215at 1146.090 kb on + strand, within AO353_05215at 1146.090 kb on + strand, within AO353_05215at 1146.091 kb on - strand, within AO353_05215at 1146.091 kb on - strand, within AO353_05215at 1146.091 kb on - strand, within AO353_05215at 1146.091 kb on - strand, within AO353_05215at 1146.091 kb on - strand, within AO353_05215at 1146.120 kb on + strand, within AO353_05215at 1146.120 kb on + strand, within AO353_05215at 1146.121 kb on - strand, within AO353_05215at 1146.218 kb on + strand, within AO353_05215at 1146.218 kb on + strand, within AO353_05215at 1146.218 kb on + strand, within AO353_05215at 1146.218 kb on + strand, within AO353_05215at 1146.218 kb on + strand, within AO353_05215at 1146.218 kb on + strand, within AO353_05215at 1146.218 kb on + strand, within AO353_05215at 1146.218 kb on + strand, within AO353_05215at 1146.218 kb on + strand, within AO353_05215at 1146.218 kb on + strand, within AO353_05215at 1146.218 kb on + strand, within AO353_05215at 1146.218 kb on + strand, within AO353_05215at 1146.218 kb on + strand, within AO353_05215at 1146.219 kb on - strand, within AO353_05215at 1146.219 kb on - strand, within AO353_05215at 1146.219 kb on - strand, within AO353_05215at 1146.219 kb on - strand, within AO353_05215at 1146.219 kb on - strand, within AO353_05215at 1146.219 kb on - strand, within AO353_05215at 1146.219 kb on - strand, within AO353_05215at 1146.219 kb on - strand, within AO353_05215at 1146.219 kb on - strand, within AO353_05215

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml
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1,144,023 + AO353_05205 0.54 -0.2
1,144,023 + AO353_05205 0.54 -0.4
1,144,023 + AO353_05205 0.54 -2.3
1,144,024 - AO353_05205 0.54 +0.3
1,144,024 - AO353_05205 0.54 +0.9
1,144,029 + AO353_05205 0.55 -0.1
1,144,030 - AO353_05205 0.55 +0.2
1,144,030 - AO353_05205 0.55 -1.1
1,144,128 + AO353_05205 0.62 +1.9
1,144,128 + AO353_05205 0.62 +0.2
1,144,129 - AO353_05205 0.62 -0.8
1,144,129 - AO353_05205 0.62 +0.2
1,144,129 - AO353_05205 0.62 +0.2
1,144,431 + AO353_05205 0.85 +0.9
1,144,431 + AO353_05205 0.85 +0.7
1,144,431 + -0.4
1,144,431 + AO353_05205 0.85 +1.0
1,144,431 + AO353_05205 0.85 +0.6
1,144,431 + AO353_05205 0.85 +0.4
1,144,431 + AO353_05205 0.85 +0.6
1,144,431 + AO353_05205 0.85 -1.5
1,144,431 + AO353_05205 0.85 -0.8
1,144,431 + AO353_05205 0.85 -0.0
1,144,431 + AO353_05205 0.85 -0.9
1,144,431 + AO353_05205 0.85 +0.2
1,144,431 + AO353_05205 0.85 -2.3
1,144,431 + AO353_05205 0.85 +0.0
1,144,431 + AO353_05205 0.85 +0.0
1,144,431 + AO353_05205 0.85 +0.4
1,144,431 + AO353_05205 0.85 +1.0
1,144,431 + AO353_05205 0.85 -0.3
1,144,431 + AO353_05205 0.85 -2.7
1,144,431 + AO353_05205 0.85 +1.2
1,144,432 - AO353_05205 0.85 -1.7
1,144,432 - AO353_05205 0.85 +0.1
1,144,432 - AO353_05205 0.85 +0.6
1,144,432 - AO353_05205 0.85 -0.8
1,144,432 - AO353_05205 0.85 +1.6
1,144,432 - AO353_05205 0.85 -0.0
1,144,432 - AO353_05205 0.85 -0.3
1,144,432 - AO353_05205 0.85 -1.0
1,144,432 - AO353_05205 0.85 -0.0
1,144,432 - AO353_05205 0.85 +0.3
1,144,432 - AO353_05205 0.85 -0.0
1,144,432 - AO353_05205 0.85 -1.8
1,144,432 - AO353_05205 0.85 -0.2
1,144,432 - AO353_05205 0.85 -0.6
1,144,432 - AO353_05205 0.85 +0.2
1,144,432 - AO353_05205 0.85 +1.2
1,144,432 - AO353_05205 0.85 -1.4
1,144,432 - AO353_05205 0.85 -1.1
1,144,432 - AO353_05205 0.85 -0.4
1,144,432 - AO353_05205 0.85 +0.2
1,144,438 + AO353_05205 0.85 -0.8
1,144,438 + AO353_05205 0.85 -2.0
1,144,438 + AO353_05205 0.85 -0.2
1,144,438 + AO353_05205 0.85 -0.8
1,144,439 - AO353_05205 0.85 +0.4
1,144,439 - AO353_05205 0.85 -1.0
1,144,439 - AO353_05205 0.85 -2.4
1,144,439 - AO353_05205 0.85 -0.4
1,144,758 - -2.1
1,144,843 + AO353_05210 0.19 +0.6
1,144,843 + AO353_05210 0.19 -0.1
1,144,843 + AO353_05210 0.19 -0.3
1,144,843 + AO353_05210 0.19 +1.7
1,144,843 + AO353_05210 0.19 -0.4
1,144,843 + AO353_05210 0.19 +2.2
1,144,844 - AO353_05210 0.19 +0.6
1,144,844 - AO353_05210 0.19 +0.5
1,144,844 - AO353_05210 0.19 +1.6
1,144,844 - AO353_05210 0.19 +1.5
1,144,844 - AO353_05210 0.19 +0.2
1,144,844 - AO353_05210 0.19 +0.8
1,144,844 - AO353_05210 0.19 -0.1
1,144,844 - AO353_05210 0.19 +1.2
1,144,844 - AO353_05210 0.19 +0.6
1,144,844 - AO353_05210 0.19 +2.9
1,144,844 - AO353_05210 0.19 +0.6
1,144,933 + AO353_05210 0.36 +0.9
1,144,943 - AO353_05210 0.38 +1.2
1,144,943 - AO353_05210 0.38 -0.0
1,145,040 - AO353_05210 0.56 +1.2
1,145,040 - AO353_05210 0.56 +1.6
1,145,228 + -1.4
1,145,228 + +0.2
1,145,228 + +0.2
1,145,228 + -1.6
1,145,228 + -0.0
1,145,228 + +0.5
1,145,228 + +1.2
1,145,228 + -0.4
1,145,229 - +1.3
1,145,229 - +1.2
1,145,229 - +1.2
1,145,229 - -0.8
1,145,229 - -2.1
1,145,229 - +0.3
1,145,267 + +0.5
1,145,268 - +0.9
1,145,415 - -1.8
1,145,512 + AO353_05215 0.13 +0.2
1,145,513 - AO353_05215 0.14 -0.3
1,145,535 + AO353_05215 0.15 +1.1
1,145,607 + AO353_05215 0.20 -0.4
1,145,607 + AO353_05215 0.20 +0.4
1,145,607 + AO353_05215 0.20 -1.6
1,145,607 + AO353_05215 0.20 -1.4
1,145,607 + AO353_05215 0.20 -0.4
1,145,607 + AO353_05215 0.20 +1.2
1,145,608 - AO353_05215 0.20 -0.1
1,145,608 - AO353_05215 0.20 -0.0
1,145,608 - AO353_05215 0.20 -0.0
1,145,667 + AO353_05215 0.24 +3.0
1,145,667 + AO353_05215 0.24 +0.7
1,145,667 + AO353_05215 0.24 -1.0
1,145,667 + AO353_05215 0.24 -0.4
1,145,667 + AO353_05215 0.24 -1.2
1,145,667 + AO353_05215 0.24 -0.1
1,145,668 - AO353_05215 0.24 -0.7
1,145,668 - AO353_05215 0.24 -0.4
1,145,668 - AO353_05215 0.24 -1.6
1,145,668 - AO353_05215 0.24 -0.8
1,145,668 - AO353_05215 0.24 -1.2
1,145,668 - AO353_05215 0.24 -0.3
1,145,668 - AO353_05215 0.24 +0.2
1,145,668 - AO353_05215 0.24 -0.8
1,145,668 - AO353_05215 0.24 -1.1
1,145,668 - AO353_05215 0.24 -1.1
1,145,680 + AO353_05215 0.25 -0.8
1,145,681 - AO353_05215 0.25 +0.0
1,145,681 - AO353_05215 0.25 +0.5
1,145,681 - AO353_05215 0.25 -0.5
1,145,703 + AO353_05215 0.27 +0.8
1,145,703 + AO353_05215 0.27 +2.2
1,145,703 + AO353_05215 0.27 -0.4
1,145,703 + AO353_05215 0.27 +0.7
1,145,704 - AO353_05215 0.27 +0.6
1,145,704 - AO353_05215 0.27 -1.4
1,145,772 + AO353_05215 0.31 +0.4
1,145,772 + AO353_05215 0.31 -0.4
1,145,772 + AO353_05215 0.31 -1.4
1,145,772 + AO353_05215 0.31 -0.4
1,145,773 - AO353_05215 0.32 +0.4
1,145,773 - AO353_05215 0.32 +1.2
1,145,773 - AO353_05215 0.32 +0.1
1,145,773 - AO353_05215 0.32 +0.7
1,145,773 - AO353_05215 0.32 +0.1
1,145,925 + AO353_05215 0.42 +1.2
1,145,925 + AO353_05215 0.42 +0.2
1,145,926 - AO353_05215 0.42 +0.6
1,145,926 - AO353_05215 0.42 +0.2
1,146,090 + AO353_05215 0.53 -0.1
1,146,090 + AO353_05215 0.53 -1.7
1,146,090 + AO353_05215 0.53 -0.5
1,146,090 + AO353_05215 0.53 +1.2
1,146,090 + AO353_05215 0.53 +1.0
1,146,091 - AO353_05215 0.54 +0.3
1,146,091 - AO353_05215 0.54 -1.6
1,146,091 - AO353_05215 0.54 +1.2
1,146,091 - AO353_05215 0.54 -0.8
1,146,091 - AO353_05215 0.54 +0.2
1,146,120 + AO353_05215 0.56 -0.2
1,146,120 + AO353_05215 0.56 -1.1
1,146,121 - AO353_05215 0.56 -0.6
1,146,218 + AO353_05215 0.62 +0.2
1,146,218 + AO353_05215 0.62 -1.1
1,146,218 + AO353_05215 0.62 -1.6
1,146,218 + AO353_05215 0.62 -0.0
1,146,218 + AO353_05215 0.62 +0.8
1,146,218 + AO353_05215 0.62 +0.2
1,146,218 + AO353_05215 0.62 +0.4
1,146,218 + AO353_05215 0.62 +1.2
1,146,218 + AO353_05215 0.62 +0.6
1,146,218 + AO353_05215 0.62 -0.1
1,146,218 + AO353_05215 0.62 +0.6
1,146,218 + AO353_05215 0.62 +0.8
1,146,218 + AO353_05215 0.62 -1.6
1,146,219 - AO353_05215 0.62 +1.2
1,146,219 - AO353_05215 0.62 +0.2
1,146,219 - AO353_05215 0.62 -1.0
1,146,219 - AO353_05215 0.62 +0.6
1,146,219 - AO353_05215 0.62 +0.2
1,146,219 - AO353_05215 0.62 -1.4
1,146,219 - AO353_05215 0.62 +0.2
1,146,219 - AO353_05215 0.62 -0.4
1,146,219 - AO353_05215 0.62 -2.0

Or see this region's nucleotide sequence