Strain Fitness in Dechlorosoma suillum PS around Dsui_1534

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1532 and Dsui_1533 are separated by 76 nucleotidesDsui_1533 and Dsui_1534 are separated by 376 nucleotidesDsui_1534 and Dsui_1535 are separated by 30 nucleotidesDsui_1535 and Dsui_1536 are separated by 116 nucleotidesDsui_1536 and Dsui_1537 are separated by 120 nucleotides Dsui_1532: Dsui_1532 - fatty-acid desaturase, at 1,594,684 to 1,595,898 _1532 Dsui_1533: Dsui_1533 - disulfide bond formation protein DsbB, at 1,595,975 to 1,596,466 _1533 Dsui_1534: Dsui_1534 - ribosomal protein L33, at 1,596,843 to 1,596,998 _1534 Dsui_1535: Dsui_1535 - ribosomal protein L28, at 1,597,029 to 1,597,262 _1535 Dsui_1536: Dsui_1536 - PilZ domain-containing protein, at 1,597,379 to 1,597,705 _1536 Dsui_1537: Dsui_1537 - DNA repair protein radc, at 1,597,826 to 1,598,503 _1537 Position (kb) 1596 1597Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1595.921 kb on - strandat 1595.953 kb on + strandat 1596.046 kb on - strand, within Dsui_1533at 1596.056 kb on - strandat 1596.153 kb on - strandat 1596.183 kb on - strand, within Dsui_1533at 1596.224 kb on + strand, within Dsui_1533at 1596.237 kb on - strand, within Dsui_1533at 1596.263 kb on + strand, within Dsui_1533at 1596.263 kb on + strand, within Dsui_1533at 1596.271 kb on - strandat 1596.370 kb on + strand, within Dsui_1533at 1596.373 kb on - strand, within Dsui_1533at 1596.379 kb on - strandat 1596.525 kb on + strandat 1596.530 kb on + strandat 1596.838 kb on - strandat 1596.936 kb on - strand, within Dsui_1534at 1597.013 kb on - strandat 1597.384 kb on - strandat 1597.384 kb on - strandat 1597.436 kb on - strand, within Dsui_1536at 1597.443 kb on - strand, within Dsui_1536at 1597.447 kb on - strand, within Dsui_1536at 1597.497 kb on + strand, within Dsui_1536at 1597.520 kb on - strand, within Dsui_1536at 1597.597 kb on + strand, within Dsui_1536at 1597.597 kb on + strandat 1597.597 kb on + strand, within Dsui_1536at 1597.604 kb on + strand, within Dsui_1536at 1597.605 kb on - strand, within Dsui_1536at 1597.605 kb on - strand, within Dsui_1536at 1597.605 kb on - strand, within Dsui_1536at 1597.605 kb on - strand, within Dsui_1536at 1597.605 kb on - strand, within Dsui_1536at 1597.773 kb on + strandat 1597.788 kb on + strandat 1597.788 kb on + strandat 1597.796 kb on - strandat 1597.798 kb on - strandat 1597.798 kb on - strandat 1597.798 kb on - strandat 1597.824 kb on + strandat 1597.824 kb on + strandat 1597.824 kb on + strandat 1597.824 kb on + strandat 1597.824 kb on + strandat 1597.824 kb on + strandat 1597.827 kb on - strandat 1597.827 kb on - strandat 1597.832 kb on - strandat 1597.832 kb on - strandat 1597.832 kb on - strandat 1597.837 kb on - strandat 1597.911 kb on - strand, within Dsui_1537at 1597.917 kb on - strandat 1597.927 kb on + strandat 1597.969 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,595,921 - -1.4
1,595,953 + +0.0
1,596,046 - Dsui_1533 0.14 -2.6
1,596,056 - -0.8
1,596,153 - -2.9
1,596,183 - Dsui_1533 0.42 -3.9
1,596,224 + Dsui_1533 0.51 -6.2
1,596,237 - Dsui_1533 0.53 -3.9
1,596,263 + Dsui_1533 0.59 -2.2
1,596,263 + Dsui_1533 0.59 -1.7
1,596,271 - -0.8
1,596,370 + Dsui_1533 0.80 -3.1
1,596,373 - Dsui_1533 0.81 -5.3
1,596,379 - -2.9
1,596,525 + +0.8
1,596,530 + -1.2
1,596,838 - +0.7
1,596,936 - Dsui_1534 0.60 -4.2
1,597,013 - +0.2
1,597,384 - +1.8
1,597,384 - +1.7
1,597,436 - Dsui_1536 0.17 +0.3
1,597,443 - Dsui_1536 0.20 +1.6
1,597,447 - Dsui_1536 0.21 +0.4
1,597,497 + Dsui_1536 0.36 -0.3
1,597,520 - Dsui_1536 0.43 +0.3
1,597,597 + Dsui_1536 0.67 -0.3
1,597,597 + -3.7
1,597,597 + Dsui_1536 0.67 -0.2
1,597,604 + Dsui_1536 0.69 -1.1
1,597,605 - Dsui_1536 0.69 +0.6
1,597,605 - Dsui_1536 0.69 +0.4
1,597,605 - Dsui_1536 0.69 -0.0
1,597,605 - Dsui_1536 0.69 +0.8
1,597,605 - Dsui_1536 0.69 -3.3
1,597,773 + -0.4
1,597,788 + -0.8
1,597,788 + -0.1
1,597,796 - +1.3
1,597,798 - -2.6
1,597,798 - +0.4
1,597,798 - -0.3
1,597,824 + -1.7
1,597,824 + -2.2
1,597,824 + -0.5
1,597,824 + +0.3
1,597,824 + -3.5
1,597,824 + -1.0
1,597,827 - -1.7
1,597,827 - +0.9
1,597,832 - -2.4
1,597,832 - -0.8
1,597,832 - -1.7
1,597,837 - -0.3
1,597,911 - Dsui_1537 0.13 -3.4
1,597,917 - -1.8
1,597,927 + -1.1
1,597,969 + -1.1

Or see this region's nucleotide sequence