Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4770 and Pf1N1B4_4771 are separated by 101 nucleotides Pf1N1B4_4771 and Pf1N1B4_4772 are separated by 190 nucleotides Pf1N1B4_4772 and Pf1N1B4_4773 are separated by 15 nucleotides
Pf1N1B4_4770 - Putative autotransporter, at 5,268,195 to 5,270,408
_4770
Pf1N1B4_4771 - Probable transmembrane protein, at 5,270,510 to 5,271,151
_4771
Pf1N1B4_4772 - RND efflux system, inner membrane transporter CmeB, at 5,271,342 to 5,274,440
_4772
Pf1N1B4_4773 - RND efflux system, membrane fusion protein CmeA, at 5,274,456 to 5,275,613
_4773
Position (kb) 5271
5272
5273
5274
5275 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5270.386 kb on + strand at 5270.386 kb on + strand at 5270.386 kb on + strand at 5270.386 kb on + strand at 5270.397 kb on + strand at 5270.398 kb on - strand at 5270.561 kb on - strand at 5270.561 kb on - strand at 5270.561 kb on - strand at 5270.561 kb on - strand at 5270.561 kb on - strand at 5270.745 kb on + strand, within Pf1N1B4_4771 at 5270.745 kb on + strand at 5270.746 kb on - strand, within Pf1N1B4_4771 at 5270.748 kb on + strand, within Pf1N1B4_4771 at 5270.748 kb on + strand at 5270.749 kb on - strand, within Pf1N1B4_4771 at 5270.749 kb on - strand at 5270.760 kb on + strand, within Pf1N1B4_4771 at 5270.761 kb on - strand, within Pf1N1B4_4771 at 5270.927 kb on + strand at 5270.927 kb on + strand at 5270.927 kb on + strand, within Pf1N1B4_4771 at 5271.177 kb on - strand at 5271.602 kb on - strand at 5271.894 kb on + strand, within Pf1N1B4_4772 at 5272.083 kb on - strand, within Pf1N1B4_4772 at 5272.083 kb on - strand, within Pf1N1B4_4772 at 5272.083 kb on - strand, within Pf1N1B4_4772 at 5272.083 kb on - strand, within Pf1N1B4_4772 at 5272.087 kb on - strand at 5272.087 kb on - strand, within Pf1N1B4_4772 at 5272.187 kb on - strand, within Pf1N1B4_4772 at 5273.109 kb on - strand, within Pf1N1B4_4772 at 5273.419 kb on + strand at 5273.419 kb on + strand, within Pf1N1B4_4772 at 5273.476 kb on + strand, within Pf1N1B4_4772 at 5273.477 kb on - strand, within Pf1N1B4_4772 at 5273.745 kb on - strand, within Pf1N1B4_4772 at 5273.988 kb on + strand, within Pf1N1B4_4772
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 5,270,386 + +1.1 5,270,386 + +3.1 5,270,386 + +0.6 5,270,386 + +1.2 5,270,397 + -0.4 5,270,398 - +0.0 5,270,561 - +0.6 5,270,561 - +0.6 5,270,561 - +0.2 5,270,561 - +0.6 5,270,561 - +2.0 5,270,745 + Pf1N1B4_4771 0.37 +2.2 5,270,745 + -1.4 5,270,746 - Pf1N1B4_4771 0.37 +0.6 5,270,748 + Pf1N1B4_4771 0.37 +0.2 5,270,748 + +0.6 5,270,749 - Pf1N1B4_4771 0.37 +1.2 5,270,749 - -0.4 5,270,760 + Pf1N1B4_4771 0.39 -1.0 5,270,761 - Pf1N1B4_4771 0.39 +0.2 5,270,927 + -0.4 5,270,927 + -1.4 5,270,927 + Pf1N1B4_4771 0.65 +0.6 5,271,177 - +0.6 5,271,602 - -2.4 5,271,894 + Pf1N1B4_4772 0.18 -1.4 5,272,083 - Pf1N1B4_4772 0.24 +1.1 5,272,083 - Pf1N1B4_4772 0.24 -2.4 5,272,083 - Pf1N1B4_4772 0.24 -0.4 5,272,083 - Pf1N1B4_4772 0.24 +1.0 5,272,087 - -0.4 5,272,087 - Pf1N1B4_4772 0.24 -0.4 5,272,187 - Pf1N1B4_4772 0.27 -1.0 5,273,109 - Pf1N1B4_4772 0.57 -0.9 5,273,419 + -1.4 5,273,419 + Pf1N1B4_4772 0.67 -0.7 5,273,476 + Pf1N1B4_4772 0.69 -1.4 5,273,477 - Pf1N1B4_4772 0.69 -1.0 5,273,745 - Pf1N1B4_4772 0.78 -2.0 5,273,988 + Pf1N1B4_4772 0.85 -1.0
Or see this region's nucleotide sequence