Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0963 and Dsui_0964 are separated by 1 nucleotides Dsui_0964 and Dsui_0965 are separated by 88 nucleotides Dsui_0965 and Dsui_0966 are separated by 219 nucleotides
Dsui_0963: Dsui_0963 - collagenase-like protease, at 988,587 to 989,498
_0963
Dsui_0964: Dsui_0964 - putative lipid carrier protein, at 989,500 to 989,997
_0964
Dsui_0965: Dsui_0965 - putative membrane protein, at 990,086 to 990,778
_0965
Dsui_0966: Dsui_0966 - methyl-accepting chemotaxis protein, at 990,998 to 993,025
_0966
Position (kb) 990
991 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 989.167 kb on - strand, within Dsui_0963 at 989.273 kb on + strand, within Dsui_0963 at 989.320 kb on + strand, within Dsui_0963 at 989.428 kb on - strand at 989.473 kb on + strand at 989.497 kb on + strand at 989.530 kb on - strand at 989.530 kb on - strand at 989.756 kb on + strand, within Dsui_0964 at 989.794 kb on - strand, within Dsui_0964 at 989.797 kb on + strand, within Dsui_0964 at 989.815 kb on - strand, within Dsui_0964 at 989.903 kb on - strand, within Dsui_0964 at 990.023 kb on - strand at 990.091 kb on - strand at 990.205 kb on + strand, within Dsui_0965 at 990.216 kb on + strand, within Dsui_0965 at 990.293 kb on + strand, within Dsui_0965 at 990.365 kb on + strand, within Dsui_0965 at 990.366 kb on + strand, within Dsui_0965 at 990.366 kb on + strand, within Dsui_0965 at 990.373 kb on - strand, within Dsui_0965 at 990.428 kb on - strand, within Dsui_0965 at 990.494 kb on - strand, within Dsui_0965 at 990.494 kb on - strand at 990.494 kb on - strand, within Dsui_0965 at 990.598 kb on + strand, within Dsui_0965 at 990.606 kb on - strand, within Dsui_0965 at 990.693 kb on - strand, within Dsui_0965 at 990.722 kb on + strand at 990.723 kb on - strand at 990.741 kb on - strand at 990.867 kb on - strand at 990.880 kb on - strand at 990.941 kb on + strand at 991.298 kb on + strand, within Dsui_0966 at 991.352 kb on + strand, within Dsui_0966 at 991.352 kb on + strand, within Dsui_0966 at 991.362 kb on + strand, within Dsui_0966 at 991.365 kb on - strand, within Dsui_0966 at 991.440 kb on + strand, within Dsui_0966 at 991.440 kb on + strand, within Dsui_0966 at 991.450 kb on + strand at 991.582 kb on - strand, within Dsui_0966 at 991.588 kb on - strand at 991.713 kb on - strand, within Dsui_0966 at 991.720 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate remove 989,167 - Dsui_0963 0.64 -2.3 989,273 + Dsui_0963 0.75 -1.9 989,320 + Dsui_0963 0.80 -1.4 989,428 - -2.5 989,473 + +1.0 989,497 + +0.4 989,530 - -2.2 989,530 - -2.4 989,756 + Dsui_0964 0.51 -3.7 989,794 - Dsui_0964 0.59 -0.9 989,797 + Dsui_0964 0.60 -1.9 989,815 - Dsui_0964 0.63 -2.8 989,903 - Dsui_0964 0.81 -1.4 990,023 - -0.1 990,091 - +0.4 990,205 + Dsui_0965 0.17 +0.9 990,216 + Dsui_0965 0.19 +1.1 990,293 + Dsui_0965 0.30 -0.2 990,365 + Dsui_0965 0.40 +0.7 990,366 + Dsui_0965 0.40 +0.6 990,366 + Dsui_0965 0.40 +0.4 990,373 - Dsui_0965 0.41 +0.2 990,428 - Dsui_0965 0.49 -0.1 990,494 - Dsui_0965 0.59 -2.0 990,494 - -0.1 990,494 - Dsui_0965 0.59 +0.0 990,598 + Dsui_0965 0.74 +1.1 990,606 - Dsui_0965 0.75 +0.5 990,693 - Dsui_0965 0.88 -0.8 990,722 + +1.3 990,723 - +0.3 990,741 - -0.4 990,867 - +1.1 990,880 - +0.0 990,941 + +1.3 991,298 + Dsui_0966 0.15 +0.5 991,352 + Dsui_0966 0.17 -0.2 991,352 + Dsui_0966 0.17 +0.6 991,362 + Dsui_0966 0.18 +1.1 991,365 - Dsui_0966 0.18 +0.2 991,440 + Dsui_0966 0.22 -0.2 991,440 + Dsui_0966 0.22 +0.7 991,450 + -0.4 991,582 - Dsui_0966 0.29 -0.4 991,588 - -0.1 991,713 - Dsui_0966 0.35 +0.9 991,720 + +1.1
Or see this region's nucleotide sequence